Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Reverse (-)

12490202 .. 12490961

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTGGAAGCCTGGGAGGGTACGAGATGTGCAATCGATGGGCCGATCCGGATCCAGCTGCATTCCGTCAGTAATGGCAGTTTGGTTTGGACGACCTTGCTTGTCGGGTACATTGCAATATTACTGTGCTTTGACAACCCGGCTTGGTCGTCTATGTGGTTCGGCGGTGACGTGGGTCAAAGGTGGCGTTGTCCGGCCACTGGCTTCAACGGCGGTCGGATGGTATGGTGGTTCTGCAGATGCGATGCCACAATTCCGACGAATAATCATTGAAAGTGGAGGTTGGCATGAGTCATGGGTCTTTCCTCTGTTGATGGGCTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.79

Weight (kDa)

9.94

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	2 cut(s)	164, 212
AclWI	GGATC	3 cut(s)	39, 45, 58
AcoI	YGGCCR	1 cut(s)	194
AfaI	GTAC	2 cut(s)	21, 109
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	207, 272
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
AlwI	GGATC	3 cut(s)	39, 45, 58
Aor13HI	TCCGGA	1 cut(s)	47
AoxI	GGCC	2 cut(s)	40, 194
ApeKI	GCWGC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	31, 213, 307
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	139
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	12, 139
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	2 cut(s)	12, 139
BmsI	GCATC	2 cut(s)	229, 234
BoxI	GACNNNNGTC	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	49
BseAI	TCCGGA	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	12
BseCI	ATCGAT	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	224
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	42, 196
BshVI	ATCGAT	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	48, 139, 193
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	42, 196
Bsp13I	TCCGGA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	44, 50
BspACI	CCGC	2 cut(s)	164, 212
BspANI	GGCC	2 cut(s)	42, 196
BspDI	ATCGAT	1 cut(s)	35
BspEI	TCCGGA	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	3 cut(s)	39, 45, 58
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	44, 50
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	47, 53
BstMBI	GATC	2 cut(s)	44, 50
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	12
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	10, 137
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	42, 196
BsuTUI	ATCGAT	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	20, 108
CviAII	CATG	2 cut(s)	287, 294
CviJI	RGCY	7 cut(s)	10, 42, 57, 142, 196, 203, 318
CviKI_1	RGCY	7 cut(s)	10, 42, 57, 142, 196, 203, 318
CviQI	GTAC	2 cut(s)	20, 108
DpnI	GATC	2 cut(s)	46, 52
DpnII	GATC	2 cut(s)	44, 50
EaeI	YGGCCR	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	10
FaeI	CATG	2 cut(s)	290, 297
FaiI	YATR	4 cut(s)	154, 225, 288, 295
FatI	CATG	2 cut(s)	286, 293
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	42, 196
HapII	CCGG	3 cut(s)	48, 139, 193
Hin1II	CATG	2 cut(s)	290, 297
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	3 cut(s)	48, 139, 193
HphI	GGTGA	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	218, 257
Hpy188III	TCNNGA	2 cut(s)	48, 324
Hpy99I	CGWCG	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	31, 60, 115, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	290, 297
Kpn2I	TCCGGA	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	44, 50
LpnPI	CCDG	6 cut(s)	24, 61, 67, 152, 185, 206
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	2 cut(s)	229, 234
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	46, 52
MboI	GATC	2 cut(s)	44, 50
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	196, 280
MnlI	CCTC	3 cut(s)	9, 272, 315
MroI	TCCGGA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	3 cut(s)	48, 139, 193
MspR9I	CCNGG	2 cut(s)	12, 139
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	44, 50
NlaIII	CATG	2 cut(s)	290, 297
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	2 cut(s)	21, 109
RsaNI	GTAC	2 cut(s)	20, 108
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	2 cut(s)	44, 50
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	12, 139
SetI	ASST	5 cut(s)	59, 97, 173, 184, 283
SfaNI	GCATC	2 cut(s)	229, 234
SfcI	CTRYAG	1 cut(s)	234
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	164, 212
SspI	AATATT	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	10, 137
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	35
TasI	AATT	1 cut(s)	251
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	166
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.