Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

80529419 .. 80531881

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCACCCAACGCAGCCCCCAGGCACCCTTTCGTCTCACTCCCTTGAACCTCAGAGGCCAACTTCACCATGTCCACCAACAGGTGGATATGATAAGGACACCCACAAGGAAAGAAAGCAAGCTGAAAAGGAAACCATGCCATCCCAAATAAGCAATCCAAACATATTACTACACCAGGAAGCAACGTCCTTAGTCGTGTTTTTGCTTTCAGCTTTCGAGTGTGCACAGTGCAATGAGAGGAACAATGAGGTTCAGTTTGCTGGTAACTACCACTTGAAGGTTCCTTCCGGGGATCCCAAGATGCTTAATAGCCAAGTGGTGAAAGCTGAGTTTGCTACTATTAAGAGGCACATTACTAATACAAGTGTTAAGAAGCTTCACATCACAAGCATTGACAGCTTCCAGATTGCAAAAAGCAAGAACAACTTCCAAATGTTGATTAATCATGCAGGTGAGGCTGCAGTTCGTTCTTGGCTGAAGAGAACTAAGAAGGTTCCGAAGAGGAGTGCAAAATCGAATCAGAAACTGGCAAAGAAATTTAAGAATAACGAAGACAACGAAGAGGATCAAGAAGAAGTCGATGAAGATGAGAAGGAAGAGAATGATGCCCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

206

Amino Acids

23.16

Weight (kDa)

7.1

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
Acc36I	ACCTGC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	83
AclWI	GGATC	3 cut(s)	287, 300, 573
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	80, 83, 277
AgsI	TTSAA	2 cut(s)	47, 277
AjnI	CCWGG	3 cut(s)	19, 174, 609
AluBI	AGCT	5 cut(s)	122, 212, 326, 376, 399
AluI	AGCT	5 cut(s)	122, 212, 326, 376, 399
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	39
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	3 cut(s)	287, 300, 573
AlwNI	CAGNNNCTG	1 cut(s)	526
AoxI	GGCC	1 cut(s)	56
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	13, 458
ApoI	RAATTY	1 cut(s)	536
AseI	ATTAAT	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	57, 331, 464
BaeGI	GKGCMC	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	25, 445
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	3 cut(s)	21, 176, 611
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	14, 459
BlsI	GCNGC	2 cut(s)	15, 460
Bme1390I	CCNGG	4 cut(s)	21, 176, 289, 611
BmiI	GGNNCC	4 cut(s)	25, 282, 294, 495
BmrFI	CCNGG	4 cut(s)	21, 176, 289, 611
BmsI	GCATC	2 cut(s)	291, 595
BpiI	GAAGAC	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	19, 288, 609
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 83, 277
Bse1I	ACTGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	3 cut(s)	21, 176, 611
BseDI	CCNNGG	3 cut(s)	19, 288, 609
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	3 cut(s)	80, 83, 277
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	65, 318
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	517
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	25, 445
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	80, 83, 277
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	292, 565
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	2 cut(s)	64, 319
BspLI	GGNNCC	4 cut(s)	25, 282, 294, 495
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	3 cut(s)	287, 300, 573
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	3 cut(s)	19, 288, 609
BssMI	GATC	2 cut(s)	292, 565
Bst2UI	CCWGG	3 cut(s)	21, 176, 611
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	4 cut(s)	473, 494, 555, 591
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	4 cut(s)	51, 190, 327, 486
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	295, 568
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	292, 565
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 332, 396, 455
BstNI	CCWGG	3 cut(s)	21, 176, 611
BstSCI	CCNGG	4 cut(s)	19, 174, 287, 609
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	25, 445
BstV2I	GAAGAC	1 cut(s)	558
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	233
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	526
CviAII	CATG	3 cut(s)	69, 136, 446
DdeI	CTNAG	4 cut(s)	51, 190, 327, 486
DpnI	GATC	2 cut(s)	294, 567
DpnII	GATC	2 cut(s)	292, 565
Eam1104I	CTCTTC	4 cut(s)	473, 494, 555, 591
EarI	CTCTTC	4 cut(s)	473, 494, 555, 591
Eco57I	CTGAAG	1 cut(s)	497
EcoRII	CCWGG	3 cut(s)	19, 174, 609
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	3 cut(s)	72, 139, 449
FaiI	YATR	5 cut(s)	70, 90, 137, 164, 447
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	3 cut(s)	68, 135, 445
Fnu4HI	GCNGC	2 cut(s)	14, 459
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	2 cut(s)	14, 459
GluI	GCNGC	2 cut(s)	14, 459
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	3 cut(s)	72, 139, 449
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	3 cut(s)	57, 331, 464
Hpy166II	GTNNAC	2 cut(s)	74, 224
Hpy188I	TCNGA	3 cut(s)	54, 498, 522
Hpy188III	TCNNGA	2 cut(s)	403, 569
Hpy8I	GTNNAC	2 cut(s)	74, 224
HpyAV	CCTTC	4 cut(s)	271, 294, 484, 586
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	7 cut(s)	4, 224, 231, 410, 449, 461, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 332, 396, 455
HpyF3I	CTNAG	4 cut(s)	51, 190, 327, 486
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	72, 139, 449
Kzo9I	GATC	2 cut(s)	292, 565
Lsp1109I	GCAGC	2 cut(s)	25, 445
LweI	GCATC	2 cut(s)	291, 595
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	294, 567
MboI	GATC	2 cut(s)	292, 565
MboII	GAAGA	7 cut(s)	490, 511, 563, 572, 584, 596, 608
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	536
MnlI	CCTC	8 cut(s)	48, 60, 231, 241, 339, 448, 495, 556
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	5 cut(s)	306, 342, 369, 441, 540
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	4 cut(s)	21, 176, 289, 611
MvaI	CCWGG	3 cut(s)	21, 176, 611
MwoI	GCNNNNNNNGC	4 cut(s)	10, 332, 396, 455
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	292, 565
NlaIII	CATG	3 cut(s)	72, 139, 449
NlaIV	GGNNCC	4 cut(s)	25, 282, 294, 495
PaqCI	CACCTGC	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	517
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	15, 460
PshBI	ATTAAT	1 cut(s)	441
Psp6I	CCWGG	3 cut(s)	19, 174, 609
PspGI	CCWGG	3 cut(s)	19, 174, 609
PspN4I	GGNNCC	4 cut(s)	25, 282, 294, 495
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	5 cut(s)	306, 342, 369, 441, 540
SatI	GCNGC	2 cut(s)	14, 459
Sau3AI	GATC	2 cut(s)	292, 565
ScrFI	CCNGG	4 cut(s)	21, 176, 289, 611
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	2 cut(s)	291, 595
SfcI	CTRYAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	450
Sse9I	AATT	1 cut(s)	536
StyD4I	CCNGG	4 cut(s)	19, 174, 287, 609
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	3 cut(s)	216, 515, 579
TasI	AATT	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	5 cut(s)	306, 342, 369, 441, 540
Tru9I	TTAA	5 cut(s)	306, 342, 369, 441, 540
TscAI	CASTG	1 cut(s)	233
TseI	GCWGC	2 cut(s)	13, 458
TspDTI	ATGAA	1 cut(s)	597
TspRI	CASTG	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	83
VneI	GTGCAC	1 cut(s)	222
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.