Rh1DG455000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
66110486 .. 66112174
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG455000.1

Sequence Viewer

Length: 465 bp
ATGAATGTTACTGTTACACTCTTCCTAAGAAGAGTCAGAAAAGGTGCTTCTGTCCTCACTGTTCGAGGAGAATATCAAGTTGGTGGAAAAATGTGTTGGATAGGCATAACGATTGGGTCGTTTTCGTCCTTGCATTTCTCAGTCTTGGATAGGCATAACGATTGGGGCTGGGATTCAGTGGCTTACATCAAGATAAAAAAAAGCGAAAGAAGAGACAAGAAAGAAAAGACCGGCTGCAAGAAAGAGGAAAGGAGGAGATCTATCGGGTCTGCAAAGAGGGATAGAAGAGAGGAAAGGAGAAGATCTATTGGGTCTGGAATCGAAAAAAGCGAAAGAAGAGCGAGGAAAGAAAAAACCGGTTACAAGGTGGTTTGTGTAAACGATTTTGTTAGTTTTCAAATTGCTATTATAATGGCTACTTCGGGTGTTTACTACATGCTTCGATTAAGTGAAAAAAGACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.88

Weight (kDa)

10.45

Isoelectric Point (pI)

65.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AgeI ACCGGT 1 cut(s) 356
AgsI TTSAA 1 cut(s) 398
AjuI GAANNNNNNNTTGG 4 cut(s) 63, 79, 95, 111
Alw26I GTCTC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 234
AsiGI ACCGGT 1 cut(s) 356
BbvI GCAGC 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 207
BglII AGATCT 2 cut(s) 257, 302
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
BsaWI WCCGGW 1 cut(s) 356
Bse118I RCCGGY 2 cut(s) 230, 356
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 2 cut(s) 81, 268
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 356
BsiSI CCGG 2 cut(s) 231, 357
BsmAI GTCTC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 257, 302
BspCNI CTCAG 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 331
BsrFI RCCGGY 2 cut(s) 230, 356
BssAI RCCGGY 2 cut(s) 230, 356
BssMI GATC 2 cut(s) 257, 302
Bst4CI ACNGT 3 cut(s) 13, 61, 462
Bst6I CTCTTC 5 cut(s) 25, 26, 205, 280, 331
BstDEI CTNAG 2 cut(s) 26, 139
BstKTI GATC 2 cut(s) 260, 305
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 257, 302
BstNSI RCATGY 1 cut(s) 439
BstV1I GCAGC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 257, 302
BstYI RGATCY 2 cut(s) 257, 302
BtsIMutI CAGTG 2 cut(s) 57, 183
Cfr10I RCCGGY 2 cut(s) 230, 356
CspAI ACCGGT 1 cut(s) 356
CviAII CATG 1 cut(s) 436
CviJI RGCY 4 cut(s) 168, 182, 234, 416
CviKI_1 RGCY 4 cut(s) 168, 182, 234, 416
DdeI CTNAG 2 cut(s) 26, 139
DpnI GATC 2 cut(s) 259, 304
DpnII GATC 2 cut(s) 257, 302
Eam1104I CTCTTC 5 cut(s) 25, 26, 205, 280, 331
EarI CTCTTC 5 cut(s) 25, 26, 205, 280, 331
FaeI CATG 1 cut(s) 439
FaiI YATR 4 cut(s) 107, 156, 410, 437
FatI CATG 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 235
GsaI CCCAGC 1 cut(s) 172
HapII CCGG 2 cut(s) 231, 357
Hin1II CATG 1 cut(s) 439
HinfI GANTC 3 cut(s) 33, 173, 318
HpaII CCGG 2 cut(s) 231, 357
Hpy166II GTNNAC 2 cut(s) 379, 430
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 2 cut(s) 190, 315
Hpy8I GTNNAC 2 cut(s) 379, 430
HpyCH4III ACNGT 3 cut(s) 13, 61, 462
HpyCH4V TGCA 3 cut(s) 133, 237, 272
HpyF3I CTNAG 2 cut(s) 26, 139
Hsp92II CATG 1 cut(s) 439
Kzo9I GATC 2 cut(s) 257, 302
LguI GCTCTTC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 154, 244, 300, 370
Lsp1109I GCAGC 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 7, 13, 359
MalI GATC 2 cut(s) 259, 304
MboI GATC 2 cut(s) 257, 302
MboII GAAGA 6 cut(s) 13, 42, 222, 297, 312, 348
MflI RGATCY 2 cut(s) 257, 302
MluCI AATT 1 cut(s) 399
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 7 cut(s) 59, 65, 238, 246, 270, 283, 336
MseI TTAA 1 cut(s) 446
MspI CCGG 2 cut(s) 231, 357
NdeII GATC 2 cut(s) 257, 302
NlaIII CATG 1 cut(s) 439
NspI RCATGY 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 331
PcsI WCGNNNNNNNCGW 2 cut(s) 116, 327
PfeI GAWTC 2 cut(s) 173, 318
PinAI ACCGGT 1 cut(s) 356
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 168
PsuI RGATCY 2 cut(s) 257, 302
SapI GCTCTTC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 2 cut(s) 257, 302
SchI GAGTC 1 cut(s) 42
SetI ASST 2 cut(s) 46, 369
Sse9I AATT 1 cut(s) 399
TaaI ACNGT 3 cut(s) 13, 61, 462
TaqI TCGA 3 cut(s) 64, 321, 442
TasI AATT 1 cut(s) 399
TfiI GAWTC 2 cut(s) 173, 318
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 2 cut(s) 64, 183
TseI GCWGC 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 64, 183
XceI RCATGY 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.