Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Reverse (-)

12484832 .. 12491245

Gene Structure 6414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG146200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAGCCAGAAAAAGAAGAAGAAACTTATAGAAGGCTGTTGATTTCTTATTTCTGCAGGAGGCTCTTTCAATTTATATCTGTTGTTTATTTTATTCTTCTTCTGCTTATTGTTGTTCTTATAACCATTTCTGAACAGATTTTGCTTTCAGCTTTCGAGTGTGCACAGTGCAATGAGAGGAACAATGAGGTTCAGTTTGCTGGTGAGCTTCAACCCAAGGGTTGTAACTACCACTTGAAGGTTCCTTCTGGGGATCCCAAGATGCTTGATAGACAAGTGGTGAAAGCTGAGTTTGCTACTATTAAGTGTATTCATGTCCGATTAAAACAGTCATGTATACAGGGTTTGATAGAGAAAAAGGGAGTTTCTAAAAAGTATGTTTTCCTCATAACAATATGGCAAATAAGATACGCAACTGTTTGGTTATATATTATTGTTTTTAAAATAAAACCATGGACAACAATCATCAGTATAAAGTCACAAGTGTGTTTGAGTAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

167

Amino Acids

19.57

Weight (kDa)

9.27

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_ZPR1	PF03367	39 - 72	1.3e-06	ZPR1 zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	337
AclWI	GGATC	2 cut(s)	248, 261
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	71, 212, 238
AleI	CACNNNNGTG	1 cut(s)	484
AluBI	AGCT	4 cut(s)	152, 208, 287, 499
AluI	AGCT	4 cut(s)	152, 208, 287, 499
Alw21I	GWGCWC	1 cut(s)	166
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	248, 261
ApaLI	GTGCAC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	215, 292
BaeGI	GKGCMC	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	166
BfmI	CTRYAG	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	6, 243, 255
BmsI	GCATC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	216, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	216, 452
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	253
Bsp19I	CCATGG	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	3 cut(s)	6, 243, 255
BspMAI	CTGCAG	1 cut(s)	59
BspPI	GGATC	2 cut(s)	248, 261
BsrDI	GCAATG	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	216, 452
BssMI	GATC	1 cut(s)	253
BssNAI	GTATAC	1 cut(s)	338
BssT1I	CCWWGG	2 cut(s)	216, 452
Bst1107I	GTATAC	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	168, 330, 418
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	1 cut(s)	452
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BstZ17I	GTATAC	1 cut(s)	338
BtgI	CCRYGG	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	173
CviAII	CATG	3 cut(s)	314, 333, 453
CviJI	RGCY	7 cut(s)	7, 37, 64, 152, 208, 287, 499
CviKI_1	RGCY	7 cut(s)	7, 37, 64, 152, 208, 287, 499
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
DraI	TTTAAA	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	216, 452
EcoT14I	CCWWGG	2 cut(s)	216, 452
ErhI	CCWWGG	2 cut(s)	216, 452
FaeI	CATG	3 cut(s)	317, 336, 456
FatI	CATG	3 cut(s)	313, 332, 452
FblI	GTMKAC	1 cut(s)	337
Hin1II	CATG	3 cut(s)	317, 336, 456
HphI	GGTGA	2 cut(s)	215, 292
Hpy166II	GTNNAC	2 cut(s)	164, 338
Hpy188I	TCNGA	2 cut(s)	133, 320
Hpy8I	GTNNAC	2 cut(s)	164, 338
HpyAV	CCTTC	3 cut(s)	27, 232, 255
HpyCH4III	ACNGT	3 cut(s)	168, 330, 418
HpyCH4V	TGCA	3 cut(s)	57, 164, 171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	317, 336, 456
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	21, 43, 186, 234, 326
LweI	GCATC	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	224, 477
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	4 cut(s)	29, 32, 89, 92
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	4 cut(s)	54, 171, 181, 395
MseI	TTAA	3 cut(s)	303, 323, 441
MslI	CAYNNNNRTG	1 cut(s)	484
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	452
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	3 cut(s)	317, 336, 456
NlaIV	GGNNCC	3 cut(s)	6, 243, 255
NmuCI	GTSAC	1 cut(s)	477
OliI	CACNNNNGTG	1 cut(s)	484
PsiI	TTATAA	1 cut(s)	122
PspN4I	GGNNCC	3 cut(s)	6, 243, 255
PstI	CTGCAG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	484
SaqAI	TTAA	3 cut(s)	303, 323, 441
Sau3AI	GATC	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	6 cut(s)	154, 192, 210, 243, 289, 501
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	484
Sse9I	AATT	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	216, 452
TaaI	ACNGT	3 cut(s)	168, 330, 418
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	71
Tru1I	TTAA	3 cut(s)	303, 323, 441
Tru9I	TTAA	3 cut(s)	303, 323, 441
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	477
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.