Rh1BG155000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
25353634 .. 25355081
1448 bp
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UTR
Exon/CDS
Intron
Rh1BG155000.1

Sequence Viewer

Length: 348 bp
ATGCAAATGGAAGTTCTGATTTTTCAATGGGTCTATTTAATAACCCAAACTCGCAAGCAGCTGCCATCCTTGCCCAGCGTCAGAGGCCAGCAGCGCAGCGCATCACTACACCTCCCAGGGCATCATGACAGGCTTGACAGCAACCCCTCCCATCTACACCTCACATATGCACCCAACGCAGCAGGCACCCTTTCGCCTCACTCCCTTGAACCTCAGAGGCCAACTTCACTATCTCCACCAACATGTGGATATGATAAGGACACCCACAAGGAAAGAAAGCAAGCTGAAAAGGAAACCATGCCATCCCAAATAAGCAATCCAACCATAACCCATTACCTGAACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.03

Weight (kDa)

8.86

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 2 cut(s) 26, 209
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 61, 284
AluI AGCT 2 cut(s) 61, 284
AoxI GGCC 2 cut(s) 85, 218
ApeKI GCWGC 5 cut(s) 58, 61, 91, 96, 179
AspLEI GCGC 2 cut(s) 96, 101
BanI GGYRCC 1 cut(s) 185
BbvI GCAGC 5 cut(s) 48, 70, 103, 108, 191
BccI CCATC 3 cut(s) 73, 159, 310
BciT130I CCWGG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 344
BisI GCNGC 5 cut(s) 59, 62, 92, 97, 180
BlsI GCNGC 5 cut(s) 60, 63, 93, 98, 181
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 110, 130
BsaJI CCNNGG 2 cut(s) 115, 116
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 115, 116
BseGI GGATG 2 cut(s) 65, 302
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 227
BseXI GCAGC 5 cut(s) 48, 70, 103, 108, 191
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 2 cut(s) 87, 220
BshNI GGYRCC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 245
BsnI GGCC 2 cut(s) 87, 220
BspANI GGCC 2 cut(s) 87, 220
BspCNI CTCAG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 115, 116
Bst2UI CCWGG 1 cut(s) 117
BstC8I GCNNGC 4 cut(s) 56, 89, 184, 282
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 65, 302
BstHHI GCGC 2 cut(s) 96, 101
BstMWI GCNNNNNNNGC 4 cut(s) 70, 84, 93, 176
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 5 cut(s) 48, 70, 103, 108, 191
BsuRI GGCC 2 cut(s) 87, 220
BtsCI GGATG 2 cut(s) 65, 302
Cac8I GCNNGC 4 cut(s) 56, 89, 184, 282
CciI TCATGA 1 cut(s) 124
CfoI GCGC 2 cut(s) 96, 101
CseI GACGC 1 cut(s) 67
CviAII CATG 3 cut(s) 125, 243, 298
CviJI RGCY 5 cut(s) 61, 87, 133, 220, 284
CviKI_1 RGCY 5 cut(s) 61, 87, 133, 220, 284
DdeI CTNAG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 3 cut(s) 128, 246, 301
FaiI YATR 7 cut(s) 126, 166, 168, 244, 252, 299, 326
FatI CATG 3 cut(s) 124, 242, 297
FauNDI CATATG 1 cut(s) 166
Fnu4HI GCNGC 5 cut(s) 59, 62, 92, 97, 180
FokI GGATG 2 cut(s) 52, 289
Fsp4HI GCNGC 5 cut(s) 59, 62, 92, 97, 180
GlaI GCGC 2 cut(s) 95, 100
GluI GCNGC 5 cut(s) 59, 62, 92, 97, 180
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 87, 220
HgaI GACGC 1 cut(s) 67
HhaI GCGC 2 cut(s) 96, 101
Hin1II CATG 3 cut(s) 128, 246, 301
Hin6I GCGC 2 cut(s) 94, 99
HinP1I GCGC 2 cut(s) 94, 99
Hpy188I TCNGA 3 cut(s) 18, 83, 216
Hpy188III TCNNGA 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 4, 170
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 84, 93, 176
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 3 cut(s) 128, 246, 301
HspAI GCGC 2 cut(s) 94, 99
LpnPI CCDG 6 cut(s) 88, 101, 102, 115, 129, 168
Lsp1109I GCAGC 5 cut(s) 48, 70, 103, 108, 191
LweI GCATC 2 cut(s) 110, 130
MmeI TCCRAC 1 cut(s) 344
MnlI CCTC 7 cut(s) 77, 122, 157, 170, 207, 210, 222
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 117
MteI GCGCNGCGC 1 cut(s) 97
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 4 cut(s) 70, 84, 93, 176
NdeI CATATG 1 cut(s) 166
NlaIII CATG 3 cut(s) 128, 246, 301
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 1 cut(s) 246
PagI TCATGA 1 cut(s) 124
PasI CCCWGGG 1 cut(s) 116
PciI ACATGT 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 5 cut(s) 60, 63, 93, 98, 181
PscI ACATGT 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 5 cut(s) 59, 62, 92, 97, 180
ScrFI CCNGG 1 cut(s) 117
SetI ASST 7 cut(s) 63, 114, 162, 214, 286, 339, 345
SfaNI GCATC 2 cut(s) 110, 130
SfcI CTRYAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 115
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseI GCWGC 5 cut(s) 58, 61, 91, 96, 179
Van91I CCANNNNNTGG 1 cut(s) 245
XceI RCATGY 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.