Rw3G011730

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
11504875 .. 11507630
2756 bp
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UTR
Exon/CDS
Intron
Rw3G011730.1

Sequence Viewer

Length: 414 bp
ATGTGGTGGAAAAGTCGTTTCTATCCTTGCTCTTCTTTGTGTCAGATGGGTATAACGATCGGGGTTTCTGTCCTTGCTCTTCTTTCAACAGAAGAGAAAGAAGCGAGCAGAGAGAAAAGAGGGGAGAGAAGAAAGAAAAGAACGGTTGCAAGATTGTTGGGGTACAAGAAAGAAGAGGAGAGATTGAAGATTTTGGTCGAAGAGGTTGCTGGGTTTTGGAAGAGGTGTGTGTTTCATTTGGGTATATGTTTGTTTTGGATAGGGATTGTTGTCGGGTTTGGAATTCAGCCACTCAGCCACTCAGATCAAGATAAAAAAAAGCAAAAGAAGAGAAAAGAAGGAAAAGAAGAATCGAAGAGAGGGGAAGATCTTGCCGAGAATAGACTGGTTCAAAGTCAGATCAGAGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

16.01

Weight (kDa)

9.72

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 282
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 3 cut(s) 87, 187, 392
ApoI RAATTY 1 cut(s) 282
BccI CCATC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BglII AGATCT 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 307, 315
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 191
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 60
Bsp143I GATC 4 cut(s) 57, 304, 367, 399
BspCNI CTCAG 2 cut(s) 306, 314
BspQI GCTCTTC 2 cut(s) 37, 84
BsrI ACTGG 1 cut(s) 390
BssMI GATC 4 cut(s) 57, 304, 367, 399
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 8 cut(s) 37, 84, 87, 168, 195, 215, 323, 350
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 293, 301
BstKTI GATC 4 cut(s) 60, 307, 370, 402
BstMBI GATC 4 cut(s) 57, 304, 367, 399
BstMCI CGRYCG 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 163
CviJI RGCY 2 cut(s) 289, 297
CviKI_1 RGCY 2 cut(s) 289, 297
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 293, 301
DpnI GATC 4 cut(s) 59, 306, 369, 401
DpnII GATC 4 cut(s) 57, 304, 367, 399
Eam1104I CTCTTC 8 cut(s) 37, 84, 87, 168, 195, 215, 323, 350
EarI CTCTTC 8 cut(s) 37, 84, 87, 168, 195, 215, 323, 350
EcoRI GAATTC 1 cut(s) 282
FaiI YATR 3 cut(s) 53, 245, 247
GsaI CCCAGC 1 cut(s) 213
HinfI GANTC 1 cut(s) 350
Hpy188I TCNGA 4 cut(s) 45, 304, 399, 404
Hpy188III TCNNGA 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 293, 301
Kzo9I GATC 4 cut(s) 57, 304, 367, 399
LguI GCTCTTC 2 cut(s) 37, 84
LpnPI CCDG 2 cut(s) 195, 371
MalI GATC 4 cut(s) 59, 306, 369, 401
MboI GATC 4 cut(s) 57, 304, 367, 399
MflI RGATCY 1 cut(s) 367
MluCI AATT 1 cut(s) 282
MnlI CCTC 5 cut(s) 113, 169, 196, 216, 353
NdeII GATC 4 cut(s) 57, 304, 367, 399
NmeAIII GCCGAG 1 cut(s) 400
PciSI GCTCTTC 2 cut(s) 37, 84
PfeI GAWTC 1 cut(s) 350
Ple19I CGATCG 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 367
PvuI CGATCG 1 cut(s) 60
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SapI GCTCTTC 2 cut(s) 37, 84
Sau3AI GATC 4 cut(s) 57, 304, 367, 399
SetI ASST 2 cut(s) 207, 227
Sse9I AATT 1 cut(s) 282
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 198, 353
TasI AATT 1 cut(s) 282
TfiI GAWTC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 224
XapI RAATTY 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.