Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8434517.1

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 733

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8434517.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 322 bp

ccgtagcaataccaacaaagaccaaatcgtcgacgtccggtcggtggtcgaagccgtctccgccgacgactcctccgacgcccctctttacaaagtcgaaagcctctgtatgcgttgcggcgaaaacggcacaaccagctttttgttcactgtgattccaaacttcagaaagattttgctctccgctttcgagtgtccgcattgcaatgagaggaataatgaggttcagtttgctggtgagcttcaacccaagggttgtacctaccgcttggaggtgccttccggggatcccaaggttagtccctttagagttatgaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

106

Amino Acids

11.82

Weight (kDa)

5.35

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	27
AatII	GACGTC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	31
AciI	CCGC	5 cut(s)	61, 118, 184, 198, 266
AclWI	GGATC	2 cut(s)	282, 295
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	2 cut(s)	34, 79
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	44, 272
AgsI	TTSAA	1 cut(s)	246
AhdI	GACNNNNNGTC	1 cut(s)	38
AluBI	AGCT	2 cut(s)	139, 242
AluI	AGCT	2 cut(s)	139, 242
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	282, 295
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	39, 143
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	284
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	277, 289
BmrFI	CCNGG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	284
BsaHI	GRCGYC	2 cut(s)	34, 79
BsaJI	CCNNGG	3 cut(s)	250, 283, 292
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 272
Bse3DI	GCAATG	2 cut(s)	200, 212
BseDI	CCNNGG	3 cut(s)	250, 283, 292
BseLI	CCNNNNNNNGG	2 cut(s)	44, 272
BseMI	GCAATG	2 cut(s)	200, 212
BseRI	GAGGAG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	38, 283
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	44, 272
BsmAI	GTCTC	1 cut(s)	62
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	287
BspACI	CCGC	5 cut(s)	61, 118, 184, 198, 266
BspLI	GGNNCC	2 cut(s)	277, 289
BspPI	GGATC	2 cut(s)	282, 295
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	200, 212
BssECI	CCNNGG	3 cut(s)	250, 283, 292
BssMI	GATC	1 cut(s)	287
BssNI	GRCGYC	2 cut(s)	34, 79
BssT1I	CCWWGG	2 cut(s)	250, 292
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	34, 79
BstKTI	GATC	1 cut(s)	290
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	287
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 127, 136
BstSCI	CCNGG	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	148
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	259
CviJI	RGCY	4 cut(s)	54, 103, 139, 242
CviKI_1	RGCY	4 cut(s)	54, 103, 139, 242
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
DrdI	GACNNNNNNGTC	1 cut(s)	27
DriI	GACNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	27
Eam1105I	GACNNNNNGTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	250, 292
Eco57I	CTGAAG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	250, 292
ErhI	CCWWGG	2 cut(s)	250, 292
Esp3I	CGTCTC	1 cut(s)	62
FaiI	YATR	2 cut(s)	111, 315
FaqI	GGGAC	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	119
HapII	CCGG	2 cut(s)	38, 283
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	2 cut(s)	34, 79
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	69, 155
HpaII	CCGG	2 cut(s)	38, 283
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	32, 148
Hpy188I	TCNGA	2 cut(s)	77, 168
Hpy8I	GTNNAC	2 cut(s)	32, 148
Hpy99I	CGWCG	4 cut(s)	33, 36, 69, 81
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 127, 136
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	2 cut(s)	34, 79
Kzo9I	GATC	1 cut(s)	287
LpnPI	CCDG	4 cut(s)	51, 149, 220, 296
MaeII	ACGT	1 cut(s)	34
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MflI	RGATCY	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	83, 94, 114, 205, 215, 266
MslI	CAYNNNNRTG	1 cut(s)	205
MspI	CCGG	2 cut(s)	38, 283
MspR9I	CCNGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	60, 127, 136
NciI	CCSGG	1 cut(s)	284
NdeII	GATC	1 cut(s)	287
NlaIV	GGNNCC	2 cut(s)	277, 289
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	277, 289
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	30
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	7 cut(s)	37, 141, 226, 244, 264, 277, 298
SgeI	CNNG	9 cut(s)	50, 148, 203, 247, 263, 281, 295, 296, 305
SgrDI	CGTCGACG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	205
SsiI	CCGC	5 cut(s)	61, 118, 184, 198, 266
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	2 cut(s)	250, 292
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	4 cut(s)	31, 49, 97, 190
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	1 cut(s)	155
TscAI	CASTG	1 cut(s)	155
TspRI	CASTG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	31
ZraI	GACGTC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.