RchiOBHm_Chr3g0465871

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
12480983 .. 12485748
4766 bp
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UTR
Exon/CDS
Intron
PRQ43198

Sequence Viewer

Length: 186 bp
ATGTCGATTAATCATGCAGGTGAGGCTGCAGTTCGTTCTTGGCTGAAGAGAACTAAGAAGGTTCCGAAGAGGAGTGCAAAATCAAATCAGAAACTGGCAAAGAAATATAAGAAAAACAAAGACGACGAAGAGGATCAAGAAGAAGTCGATGAAGATGAGAAGGAAGAGGATGATGCCCAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.12

Weight (kDa)

5.44

Isoelectric Point (pI)

73.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 65
AjnI CCWGG 1 cut(s) 177
AlwI GGATC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 26
AseI ATTAAT 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 32
BbvI GCAGC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 8
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 8
BspPI GGATC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 4 cut(s) 41, 62, 123, 159
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 8
CaiI CAGNNNCTG 1 cut(s) 94
CviAII CATG 1 cut(s) 14
CviJI RGCY 2 cut(s) 26, 43
CviKI_1 RGCY 2 cut(s) 26, 43
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 4 cut(s) 41, 62, 123, 159
EarI CTCTTC 4 cut(s) 41, 62, 123, 159
Eco57I CTGAAG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 17
FaiI YATR 2 cut(s) 15, 108
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
Hin1II CATG 1 cut(s) 17
HphI GGTGA 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 66, 90
Hpy188III TCNNGA 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 52, 154
HpyCH4V TGCA 3 cut(s) 17, 29, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 3, 80, 164
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 163
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 6 cut(s) 58, 79, 140, 152, 164, 176
MnlI CCTC 4 cut(s) 16, 63, 124, 160
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 63
PaqCI CACCTGC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 63
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 179
SetI ASST 2 cut(s) 22, 63
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 27
SgeI CNNG 5 cut(s) 26, 30, 51, 107, 149
SmiMI CAYNNNNRTG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 177
TaqI TCGA 2 cut(s) 5, 147
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 165
VspI ATTAAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.