Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007705.1

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

45733 .. 53636

Gene Structure 7904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007705.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

atgtggaagcctgggagggtacgagatgtgcaatcgatggggcgatccggatccggctgcattccgtcagtaatggcagttcagtttggacgaccctgcttgtcggatacattgcaatattgctgtgctttgacaacccggcttggtcgtctatgtggttcggtggtgacgtgggtcaaaggtggcgttgtccggccactggcttcagcggcggttggatggtatggtggttctgcagatgcgatgccacaattccgacgaataatcattgaaagtcgagatttaggtggcctttgtcccggcttgcacgttaggtgtgccttgtttggcctagtgaggtggcatgtcgttgttgactggacgcaatctcttagtgacagaatgaaacagagtgtcgtcggtcttagttccgattggcaatatagtgggacagctgattttatttgtacattgatcctcttcgggagagtgatctttccagtctgtcacgataaagcaaatgtagttgccagagatacaaccattgctatttggtgcatgttaggatacatggtttttgtagagattcctgctattattgcgggcaattcttttgacgctaattatagaataatgggaaaccaattgaagaaaatctccgccgcatcttctcaacattcatgtatcaccgccgtctttccttcccgccgaatttcaccgaaaagcagtactcttgctgaaatctggactatttgtcgtttctgtccttgctcttctctcaacaaaagcgaaagaagcgagcagagaggaaggcggaaaagcgaaagaagcgagcagagggaaaagaggaatagaagagacgaaaggagaagatctatgagcactgggaagaagagagaagaaagaaaagaccggttgcaaggtattggatttgtgattgttggggtacaagaaagaagaggagagattgaagattttggtcgaagaggttgctgggttttggaagagttttggatagggattgttgtcgggtttggaattcagccattcagccactcagatcaagatcaaaaaaagcaaaagaagagaaaagaaggaaaagaagaatcgaagagaggggaagatctcgccgagaatagaccggttcaaaggaacaatgaggttcagtttgctggtgagcttcaacccaagggttgtaactaccacttgaaggttccttctggggatcccaagatgcttgatagacaagtggtgaaagctgagtttgctactattaagaggcacattactaatacaagtgttaagaagcttcacatcacaagcattgacagcttccagattgcaaaaagcaagaacaacttccaaatgttgattaatcatgcaggtgaggctgcagttcgttcttggctgaagagaactaagaaggttccgaagaggagtgcaaaatcaaatcagaaactggcaaagaaatataagaaaaacaaagacgacgaagaggatcaagaagaagtcgatgaagatgagaaggaagaggatgatgcccaggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

509

Amino Acids

57.68

Weight (kDa)

9.58

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1352
Acc36I	ACCTGC	1 cut(s)	1352
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	8 cut(s)	209, 212, 581, 639, 642, 669, 685, 793
AclWI	GGATC	7 cut(s)	39, 45, 58, 448, 1199, 1212, 1485
AcoI	YGGCCR	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	690, 1017
AcuI	CTGAAG	2 cut(s)	189, 1409
AfaI	GTAC	4 cut(s)	21, 448, 709, 927
AfiI	CCNNNNNNNGG	2 cut(s)	199, 1189
AgeI	ACCGGT	2 cut(s)	891, 1120
AgsI	TTSAA	6 cut(s)	272, 628, 950, 1127, 1163, 1189
AhdI	GACNNNNNGTC	1 cut(s)	732
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	2 cut(s)	10, 1521
AluBI	AGCT	5 cut(s)	434, 1159, 1238, 1288, 1311
AluI	AGCT	5 cut(s)	434, 1159, 1238, 1288, 1311
Alw21I	GWGCWC	1 cut(s)	863
Alw26I	GTCTC	1 cut(s)	831
AlwI	GGATC	7 cut(s)	39, 45, 58, 448, 1199, 1212, 1485
AlwNI	CAGNNNCTG	1 cut(s)	1438
Aor13HI	TCCGGA	1 cut(s)	47
AoxI	GGCC	3 cut(s)	194, 289, 328
ApeKI	GCWGC	2 cut(s)	57, 1370
ApoI	RAATTY	2 cut(s)	690, 1017
AseI	ATTAAT	1 cut(s)	1353
AsiGI	ACCGGT	2 cut(s)	891, 1120
Asp700I	GAANNNNTTC	1 cut(s)	1337
AsuC2I	CCSGG	2 cut(s)	139, 300
AsuHPI	GGTGA	6 cut(s)	178, 658, 687, 1166, 1243, 1376
BamHI	GGATCC	2 cut(s)	50, 1204
Bbv12I	GWGCWC	1 cut(s)	863
BbvI	GCAGC	2 cut(s)	44, 1357
BccI	CCATC	2 cut(s)	31, 213
BceAI	ACGGC	1 cut(s)	656
BcgI	CGANNNNNNTGC	2 cut(s)	951, 985
BciT130I	CCWGG	2 cut(s)	12, 1523
BciVI	GTATCC	2 cut(s)	100, 539
BcnI	CCSGG	2 cut(s)	139, 300
BcoDI	GTCTC	1 cut(s)	831
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	234, 1371
BfuAI	ACCTGC	1 cut(s)	1352
BfuI	GTATCC	2 cut(s)	100, 539
BglII	AGATCT	2 cut(s)	851, 1102
BisI	GCNGC	4 cut(s)	58, 210, 642, 1371
BlsI	GCNGC	4 cut(s)	59, 211, 643, 1372
BmcAI	AGTACT	1 cut(s)	709
Bme1390I	CCNGG	4 cut(s)	12, 139, 300, 1523
BmeRI	GACNNNNNGTC	1 cut(s)	732
BmgBI	CACGTC	1 cut(s)	171
BmiI	GGNNCC	4 cut(s)	52, 1194, 1206, 1407
BmrFI	CCNGG	4 cut(s)	12, 139, 300, 1523
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	5 cut(s)	229, 234, 653, 1203, 1507
BmuI	ACTGGG	1 cut(s)	873
BoxI	GACNNNNGTC	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	139, 300
Bsa29I	ATCGAT	1 cut(s)	35
BsaBI	GATNNNNATC	2 cut(s)	49, 1044
BsaJI	CCNNGG	3 cut(s)	11, 1167, 1521
BsaWI	WCCGGW	3 cut(s)	47, 891, 1120
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 1189
Bse118I	RCCGGY	2 cut(s)	891, 1120
Bse1I	ACTGG	5 cut(s)	204, 362, 479, 868, 1443
Bse3DI	GCAATG	2 cut(s)	110, 522
Bse8I	GATNNNNATC	2 cut(s)	49, 1044
BseAI	TCCGGA	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	12, 1523
BseCI	ATCGAT	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	11, 1167, 1521
BseGI	GGATG	2 cut(s)	224, 1519
BseJI	GATNNNNATC	2 cut(s)	49, 1044
BseLI	CCNNNNNNNGG	2 cut(s)	199, 1189
BseMI	GCAATG	2 cut(s)	110, 522
BseMII	CTCAG	2 cut(s)	1050, 1230
BseNI	ACTGG	5 cut(s)	204, 362, 479, 868, 1443
BseRI	GAGGAG	2 cut(s)	954, 1429
BseXI	GCAGC	2 cut(s)	44, 1357
BseYI	CCCAGC	1 cut(s)	972
BshFI	GGCC	3 cut(s)	196, 291, 330
BshTI	ACCGGT	2 cut(s)	891, 1120
BshVI	ATCGAT	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	863
BsiSI	CCGG	7 cut(s)	48, 54, 139, 193, 300, 892, 1121
BslFI	GGGAC	2 cut(s)	282, 442
BslI	CCNNNNNNNGG	2 cut(s)	199, 1189
BsmAI	GTCTC	1 cut(s)	831
BsmBI	CGTCTC	1 cut(s)	831
BsmFI	GGGAC	2 cut(s)	282, 442
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	196, 291, 330
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp13I	TCCGGA	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	446
BspACI	CCGC	8 cut(s)	209, 212, 581, 639, 642, 669, 685, 793
BspANI	GGCC	3 cut(s)	196, 291, 330
BspCNI	CTCAG	2 cut(s)	1049, 1231
BspDI	ATCGAT	1 cut(s)	35
BspEI	TCCGGA	1 cut(s)	47
BspLI	GGNNCC	4 cut(s)	52, 1194, 1206, 1407
BspMAI	CTGCAG	2 cut(s)	238, 1375
BspMI	ACCTGC	1 cut(s)	1352
BspPI	GGATC	7 cut(s)	39, 45, 58, 448, 1199, 1212, 1485
BspQI	GCTCTTC	1 cut(s)	757
BsrDI	GCAATG	2 cut(s)	110, 522
BsrFI	RCCGGY	2 cut(s)	891, 1120
BsrGI	TGTACA	1 cut(s)	446
BsrI	ACTGG	5 cut(s)	204, 362, 479, 868, 1443
BssAI	RCCGGY	2 cut(s)	891, 1120
BssECI	CCNNGG	3 cut(s)	11, 1167, 1521
BssT1I	CCWWGG	1 cut(s)	1167
Bst2UI	CCWGG	2 cut(s)	12, 1523
BstAUI	TGTACA	1 cut(s)	446
BstC8I	GCNNGC	4 cut(s)	305, 583, 779, 812
BstDEI	CTNAG	5 cut(s)	371, 404, 1036, 1239, 1398
BstF5I	GGATG	2 cut(s)	224, 1519
BstMAI	GTCTC	1 cut(s)	831
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 578, 774, 807, 1244, 1308, 1367
BstNI	CCWGG	2 cut(s)	12, 1523
BstNSI	RCATGY	2 cut(s)	347, 541
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSCI	CCNGG	4 cut(s)	10, 137, 298, 1521
BstSFI	CTRYAG	2 cut(s)	234, 1371
BstV1I	GCAGC	2 cut(s)	44, 1357
BstX2I	RGATCY	4 cut(s)	50, 851, 1102, 1204
BstYI	RGATCY	4 cut(s)	50, 851, 1102, 1204
Bsu15I	ATCGAT	1 cut(s)	35
BsuI	GTATCC	2 cut(s)	100, 539
BsuRI	GGCC	3 cut(s)	196, 291, 330
BsuTUI	ATCGAT	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	224, 1519
BtsIMutI	CAGTG	2 cut(s)	197, 861
BveI	ACCTGC	1 cut(s)	1352
Cac8I	GCNNGC	4 cut(s)	305, 583, 779, 812
CaiI	CAGNNNCTG	1 cut(s)	1438
Cfr10I	RCCGGY	2 cut(s)	891, 1120
ClaI	ATCGAT	1 cut(s)	35
CseI	GACGC	2 cut(s)	370, 605
Csp6I	GTAC	4 cut(s)	20, 447, 708, 926
CspAI	ACCGGT	2 cut(s)	891, 1120
CviAII	CATG	5 cut(s)	344, 538, 550, 660, 1358
CviQI	GTAC	4 cut(s)	20, 447, 708, 926
DdeI	CTNAG	5 cut(s)	371, 404, 1036, 1239, 1398
DriI	GACNNNNNGTC	1 cut(s)	732
EaeI	YGGCCR	1 cut(s)	194
Eam1105I	GACNNNNNGTC	1 cut(s)	732
EciI	GGCGGA	2 cut(s)	628, 808
Eco130I	CCWWGG	1 cut(s)	1167
Eco57I	CTGAAG	2 cut(s)	189, 1409
EcoRI	GAATTC	1 cut(s)	1017
EcoRII	CCWGG	2 cut(s)	10, 1521
EcoT14I	CCWWGG	1 cut(s)	1167
ErhI	CCWWGG	1 cut(s)	1167
Esp3I	CGTCTC	1 cut(s)	831
FaeI	CATG	5 cut(s)	347, 541, 553, 663, 1361
FalI	AAGNNNNNCTT	2 cut(s)	1322, 1354
FaqI	GGGAC	2 cut(s)	282, 442
FatI	CATG	5 cut(s)	343, 537, 549, 659, 1357
FauI	CCCGC	2 cut(s)	574, 692
Fnu4HI	GCNGC	4 cut(s)	58, 210, 642, 1371
FokI	GGATG	2 cut(s)	231, 1526
Fsp4HI	GCNGC	4 cut(s)	58, 210, 642, 1371
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	4 cut(s)	58, 210, 642, 1371
GsaI	CCCAGC	1 cut(s)	976
HaeIII	GGCC	3 cut(s)	196, 291, 330
HapII	CCGG	7 cut(s)	48, 54, 139, 193, 300, 892, 1121
HgaI	GACGC	2 cut(s)	370, 605
Hin1II	CATG	5 cut(s)	347, 541, 553, 663, 1361
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	1286
HinfI	GANTC	2 cut(s)	565, 1085
HpaII	CCGG	7 cut(s)	48, 54, 139, 193, 300, 892, 1121
HphI	GGTGA	6 cut(s)	178, 658, 687, 1166, 1243, 1376
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	6 cut(s)	106, 257, 412, 1039, 1410, 1434
Hpy188III	TCNNGA	8 cut(s)	48, 278, 463, 488, 724, 1043, 1315, 1481
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	3 cut(s)	261, 401, 1472
HpyAV	CCTTC	7 cut(s)	690, 783, 1067, 1183, 1206, 1396, 1498
HpyCH4IV	ACGT	2 cut(s)	170, 309
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 578, 774, 807, 1244, 1308, 1367
HpyF3I	CTNAG	5 cut(s)	371, 404, 1036, 1239, 1398
HpySE526I	ACGT	2 cut(s)	170, 309
Hsp92II	CATG	5 cut(s)	347, 541, 553, 663, 1361
Kpn2I	TCCGGA	1 cut(s)	47
LguI	GCTCTTC	1 cut(s)	757
Lsp1109I	GCAGC	2 cut(s)	44, 1357
LweI	GCATC	5 cut(s)	229, 234, 653, 1203, 1507
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	170, 309
MaeIII	GTNAC	4 cut(s)	166, 374, 485, 1175
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	4 cut(s)	50, 851, 1102, 1204
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	6 cut(s)	251, 586, 601, 623, 690, 1017
MmeI	TCCRAC	3 cut(s)	84, 196, 280
MroI	TCCGGA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	1337
MseI	TTAA	3 cut(s)	1254, 1281, 1353
MslI	CAYNNNNRTG	1 cut(s)	1362
MspA1I	CMGCKG	2 cut(s)	209, 434
MspI	CCGG	7 cut(s)	48, 54, 139, 193, 300, 892, 1121
MspR9I	CCNGG	4 cut(s)	12, 139, 300, 1523
MunI	CAATTG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	2 cut(s)	12, 1523
MwoI	GCNNNNNNNGC	7 cut(s)	209, 578, 774, 807, 1244, 1308, 1367
NciI	CCSGG	2 cut(s)	139, 300
NlaIII	CATG	5 cut(s)	347, 541, 553, 663, 1361
NlaIV	GGNNCC	4 cut(s)	52, 1194, 1206, 1407
NmeAIII	GCCGAG	1 cut(s)	1135
NmuCI	GTSAC	3 cut(s)	166, 374, 485
NspI	RCATGY	2 cut(s)	347, 541
PaqCI	CACCTGC	1 cut(s)	1352
PciSI	GCTCTTC	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	1337
PfeI	GAWTC	2 cut(s)	565, 1085
PinAI	ACCGGT	2 cut(s)	891, 1120
PkrI	GCNGC	4 cut(s)	59, 211, 643, 1372
PshAI	GACNNNNGTC	1 cut(s)	173
PshBI	ATTAAT	1 cut(s)	1353
Psp6I	CCWGG	2 cut(s)	10, 1521
PspFI	CCCAGC	1 cut(s)	972
PspGI	CCWGG	2 cut(s)	10, 1521
PspN4I	GGNNCC	4 cut(s)	52, 1194, 1206, 1407
PsrI	GAACNNNNNNTAC	2 cut(s)	63, 95
PstI	CTGCAG	2 cut(s)	238, 1375
PstNI	CAGNNNCTG	1 cut(s)	1438
PsuI	RGATCY	4 cut(s)	50, 851, 1102, 1204
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	4 cut(s)	21, 448, 709, 927
RsaNI	GTAC	4 cut(s)	20, 447, 708, 926
RseI	CAYNNNNRTG	1 cut(s)	1362
SapI	GCTCTTC	1 cut(s)	757
SaqAI	TTAA	3 cut(s)	1254, 1281, 1353
SatI	GCNGC	4 cut(s)	58, 210, 642, 1371
ScaI	AGTACT	1 cut(s)	709
ScrFI	CCNGG	4 cut(s)	12, 139, 300, 1523
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	5 cut(s)	229, 234, 653, 1203, 1507
SfcI	CTRYAG	2 cut(s)	234, 1371
SmiMI	CAYNNNNRTG	1 cut(s)	1362
Sse9I	AATT	6 cut(s)	251, 586, 601, 623, 690, 1017
SsiI	CCGC	8 cut(s)	209, 212, 581, 639, 642, 669, 685, 793
SspI	AATATT	1 cut(s)	119
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	4 cut(s)	10, 137, 298, 1521
StyI	CCWWGG	1 cut(s)	1167
TaiI	ACGT	2 cut(s)	173, 312
TaqI	TCGA	5 cut(s)	35, 277, 961, 1088, 1491
TaqII	GACCGA	1 cut(s)	389
TasI	AATT	6 cut(s)	251, 586, 601, 623, 690, 1017
TatI	WGTACW	2 cut(s)	446, 707
TauI	GCSGC	2 cut(s)	212, 644
TfiI	GAWTC	2 cut(s)	565, 1085
Tru1I	TTAA	3 cut(s)	1254, 1281, 1353
Tru9I	TTAA	3 cut(s)	1254, 1281, 1353
TscAI	CASTG	2 cut(s)	204, 868
TseFI	GTSAC	3 cut(s)	166, 374, 485
TseI	GCWGC	2 cut(s)	57, 1370
Tsp45I	GTSAC	3 cut(s)	166, 374, 485
TspDTI	ATGAA	3 cut(s)	398, 648, 1509
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	204, 868
VspI	ATTAAT	1 cut(s)	1353
XapI	RAATTY	2 cut(s)	690, 1017
XceI	RCATGY	2 cut(s)	347, 541
XmnI	GAANNNNTTC	1 cut(s)	1337
XspI	CTAG	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.