Rh5CG400500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
53349386 .. 53352484
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG400500.1

Sequence Viewer

Length: 225 bp
ATGAGCTCTGGAAAGAAGAGAGAAGAAAGAAAAGACATTGGATTTGTGATTGTTGGGGTAGGAGAAAGAAGTGGAGAGGTTGAAGAATTTGGTCGAAGAGGTTGCTGGGTTTTGGAAGAGGGTGTGGAGAGTGGGGAGATAGCTTCTTTAAGAGGTAAGATGTTTAGGACAAAGGCAGTCACCGAGGAATTGGATCTAGAGCGTAATTATGAATTTAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.4

Weight (kDa)

5.05

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 201
AcsI RAATTY 2 cut(s) 86, 212
AgsI TTSAA 1 cut(s) 83
AluBI AGCT 2 cut(s) 6, 143
AluI AGCT 2 cut(s) 6, 143
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 201
ApoI RAATTY 2 cut(s) 86, 212
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AsuHPI GGTGA 1 cut(s) 172
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BfaI CTAG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 193
BspPI GGATC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 193
Bst6I CTCTTC 3 cut(s) 11, 91, 111
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
CviJI RGCY 2 cut(s) 6, 143
CviKI_1 RGCY 2 cut(s) 6, 143
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 3 cut(s) 11, 91, 111
EarI CTCTTC 3 cut(s) 11, 91, 111
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 8
FaiI YATR 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 1 cut(s) 197
GsaI CCCAGC 1 cut(s) 109
HphI GGTGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 9, 197
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 1 cut(s) 91
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 5 cut(s) 28, 35, 95, 108, 128
MfeI CAATTG 1 cut(s) 220
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 86, 188, 205, 212, 220
MnlI CCTC 5 cut(s) 70, 92, 112, 146, 178
MseI TTAA 1 cut(s) 149
MunI CAATTG 1 cut(s) 220
NdeII GATC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 105
PsuI RGATCY 1 cut(s) 193
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 149
Sau3AI GATC 1 cut(s) 193
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 8, 81, 103, 145, 157
SgeI CNNG 4 cut(s) 21, 118, 196, 209
Sse9I AATT 5 cut(s) 86, 188, 205, 212, 220
SspMI CTAG 1 cut(s) 197
SstI GAGCTC 1 cut(s) 8
TaqI TCGA 1 cut(s) 94
TasI AATT 5 cut(s) 86, 188, 205, 212, 220
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 225
XapI RAATTY 2 cut(s) 86, 212
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.