Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001524.1

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

79453 .. 81492

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001524.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgcgtagcaatgtttttgggcttctgctgggcctgctgatttggtgggctgagaaagcttcgcacgtgggcatgcgtgacaaaggtgggcaggaggacagaagtgggcaaaggctcggggatcattttccttttgtttttgatatcttcgacataaggaccaagctcctcatcttcttctctgtctccgacaccaaggatctccagatcgtgaacctcactcttacggttctctatcaccgtgaggtgaatcacctccatcagatcttcaaaaccctagggatcgagtacgacgagaaggtcctccattcggaaatcacaggaaggcctcacggcgatctgcttgtgaaactggcgtcagagtcgcggtggtggaagtgctcgagcggctttgatggtggcagtgagttcatggacgacttgggtcgccagtatttgattttcgttggttgggattttctttttctgttttgttgctgggttcaagaacataaatatctagaattgatggattcaattgttacaatctggattcaactgctgggttttcttctagctagatggcttcaattatctgtgaattttttgtgttgtggtttccaatttggtagtggagatgagagattgaggaaagcatatgggtttagacacctgctgcaattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

221

Amino Acids

25.85

Weight (kDa)

6.29

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	660
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	660
AccBSI	CCGCTC	1 cut(s)	387
AccII	CGCG	1 cut(s)	367
AciI	CCGC	2 cut(s)	367, 387
AclWI	GGATC	3 cut(s)	129, 207, 290
AcsI	RAATTY	1 cut(s)	580
AcvI	CACGTG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	5 cut(s)	271, 485, 516, 536, 569
AluBI	AGCT	3 cut(s)	59, 166, 557
AluI	AGCT	3 cut(s)	59, 166, 557
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	129, 207, 290
Ama87I	CYCGRG	2 cut(s)	116, 382
AoxI	GGCC	2 cut(s)	31, 326
ApeKI	GCWGC	1 cut(s)	655
ApoI	RAATTY	1 cut(s)	580
AspA2I	CCTAGG	1 cut(s)	277
AspS9I	GGNCC	3 cut(s)	31, 159, 301
AsuHPI	GGTGA	3 cut(s)	230, 245, 259
AvaI	CYCGRG	2 cut(s)	116, 382
AvaII	GGWCC	2 cut(s)	159, 301
AvrII	CCTAGG	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	642
BccI	CCATC	4 cut(s)	267, 389, 502, 555
BceAI	ACGGC	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	4 cut(s)	278, 500, 554, 558
BfuAI	ACCTGC	1 cut(s)	660
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	2 cut(s)	388, 656
BlnI	CCTAGG	1 cut(s)	277
BlsI	GCNGC	2 cut(s)	389, 657
Bme18I	GGWCC	2 cut(s)	159, 301
BmeT110I	CYCGRG	2 cut(s)	116, 382
BmgT120I	GGNCC	3 cut(s)	31, 159, 301
BoxI	GACNNNNGTC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	195, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	357, 430
Bse3DI	GCAATG	1 cut(s)	16
BseDI	CCNNGG	2 cut(s)	195, 277
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	357, 430
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	642
BseYI	CCCAGC	3 cut(s)	28, 477, 541
Bsh1236I	CGCG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	33, 328
BsiHKAI	GWGCWC	1 cut(s)	383
BsiHKCI	CYCGRG	2 cut(s)	116, 382
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	33, 328
BsoBI	CYCGRG	2 cut(s)	116, 382
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	6 cut(s)	121, 199, 207, 264, 282, 337
BspACI	CCGC	2 cut(s)	367, 387
BspANI	GGCC	2 cut(s)	33, 328
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	660
BspPI	GGATC	3 cut(s)	129, 207, 290
BsrBI	CCGCTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	357, 430
BssECI	CCNNGG	2 cut(s)	195, 277
BssMI	GATC	6 cut(s)	121, 199, 207, 264, 282, 337
BssNI	GRCGYC	1 cut(s)	356
BssT1I	CCWWGG	2 cut(s)	195, 277
Bst4CI	ACNGT	2 cut(s)	229, 242
BstACI	GRCGYC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	35, 74
BstDEI	CTNAG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	367
BstKTI	GATC	6 cut(s)	124, 202, 210, 267, 285, 340
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	6 cut(s)	121, 199, 207, 264, 282, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 56, 387
BstNSI	RCATGY	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	423
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	642
BstX2I	RGATCY	2 cut(s)	199, 264
BstYI	RGATCY	2 cut(s)	199, 264
BsuRI	GGCC	2 cut(s)	33, 328
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	660
Cac8I	GCNNGC	2 cut(s)	35, 74
Cfr13I	GGNCC	3 cut(s)	31, 159, 301
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	73, 412
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	6 cut(s)	123, 201, 209, 266, 284, 339
DpnII	GATC	6 cut(s)	121, 199, 207, 264, 282, 337
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eco130I	CCWWGG	2 cut(s)	195, 277
Eco147I	AGGCCT	1 cut(s)	328
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	159, 301
Eco72I	CACGTG	1 cut(s)	67
Eco88I	CYCGRG	2 cut(s)	116, 382
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	195, 277
ErhI	CCWWGG	2 cut(s)	195, 277
FaeI	CATG	2 cut(s)	76, 415
FaiI	YATR	6 cut(s)	74, 155, 413, 492, 637, 639
FatI	CATG	2 cut(s)	72, 411
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	2 cut(s)	388, 656
Fsp4HI	GCNGC	2 cut(s)	388, 656
FspBI	CTAG	4 cut(s)	278, 500, 554, 558
GluI	GCNGC	2 cut(s)	388, 656
GsaI	CCCAGC	3 cut(s)	32, 481, 545
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	33, 328
HgaI	GACGC	1 cut(s)	345
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	76, 415
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	4 cut(s)	250, 362, 512, 532
HphI	GGTGA	3 cut(s)	230, 245, 259
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	4 cut(s)	190, 264, 313, 361
Hpy188III	TCNNGA	5 cut(s)	205, 211, 485, 500, 529
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	292, 318
HpyCH4III	ACNGT	2 cut(s)	229, 242
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 56, 387
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	2 cut(s)	76, 415
Kzo9I	GATC	6 cut(s)	121, 199, 207, 264, 282, 337
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	1 cut(s)	642
MaeI	CTAG	4 cut(s)	278, 500, 554, 558
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	77, 520
MalI	GATC	6 cut(s)	123, 201, 209, 266, 284, 339
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	6 cut(s)	121, 199, 207, 264, 282, 337
MboII	GAAGA	5 cut(s)	139, 166, 169, 259, 542
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	2 cut(s)	199, 264
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	6 cut(s)	503, 516, 569, 580, 602, 659
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	8 cut(s)	88, 179, 227, 238, 266, 314, 339, 621
MunI	CAATTG	1 cut(s)	516
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	3 cut(s)	34, 56, 387
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	6 cut(s)	121, 199, 207, 264, 282, 337
NlaIII	CATG	2 cut(s)	76, 415
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	382
PaqCI	CACCTGC	1 cut(s)	660
PceI	AGGCCT	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	250, 512, 532
PkrI	GCNGC	2 cut(s)	389, 657
PleI	GAGTC	1 cut(s)	370
PmaCI	CACGTG	1 cut(s)	67
PmlI	CACGTG	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	301
PshAI	GACNNNNGTC	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	301
PspCI	CACGTG	1 cut(s)	67
PspFI	CCCAGC	3 cut(s)	28, 477, 541
PspPI	GGNCC	3 cut(s)	31, 159, 301
PspPPI	RGGWCCY	1 cut(s)	301
PspXI	VCTCGAGB	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	199, 264
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SatI	GCNGC	2 cut(s)	388, 656
Sau3AI	GATC	6 cut(s)	121, 199, 207, 264, 282, 337
Sau96I	GGNCC	3 cut(s)	31, 159, 301
SchI	GAGTC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	383
Sfr274I	CTCGAG	1 cut(s)	382
SinI	GGWCC	2 cut(s)	159, 301
SlaI	CTCGAG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
SphI	GCATGC	1 cut(s)	76
Sse9I	AATT	6 cut(s)	503, 516, 569, 580, 602, 659
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	367, 387
SspMI	CTAG	4 cut(s)	278, 500, 554, 558
StuI	AGGCCT	1 cut(s)	328
StyI	CCWWGG	2 cut(s)	195, 277
TaaI	ACNGT	2 cut(s)	229, 242
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	3 cut(s)	150, 285, 383
TasI	AATT	6 cut(s)	503, 516, 569, 580, 602, 659
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	3 cut(s)	250, 512, 532
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	400
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	159, 301
XapI	RAATTY	1 cut(s)	580
XbaI	TCTAGA	1 cut(s)	499
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	382
XmaJI	CCTAGG	1 cut(s)	277
XspI	CTAG	4 cut(s)	278, 500, 554, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.