Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Reverse (-)

16474668 .. 16480851

Gene Structure 6184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG078400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGGAAAAATATGGTCATGGTTTGGAGCCGGTTCGGCCGCCTGTTTAGGTCGGTCCGGCCTCCGGTCCAGAAGTCGGTTCAGAGGACCAAGCTCCACATCTTCTTCTCTGTCTCCGACACCAAGGATCTCCAGATTGTGAACCTCACTCTTACGGTTCTCTATCACCCTAAGGTGAATCGCCTCCATAAGATCTTCAAAACCCTAGGGATCGAGTACGACGAGAAGGTCCTCCCTTCGGCAACCATAGGAAGGACTCACGACGATCTGCTTGTGAAGCTGGCGTCAGAGTCGCGGTGGTGGAAGTGCTCGAGCGGCTTTGATGGTGGCAGTGGGTTCATGGACGACTTGGGTCGCCGGTATTTGAATTTCGTTGGTGAGATCGGCTACCAGTCCACTGCCACTGTCTCAATCAACTCACACATGCGAAGGGCTAGGTACCCCTGGACGCTTCTGAAGGACTCTAGTAAATCTTTCAAGGAAAATTTGATAACCAACCTCGTCAACAGTGACGATTCAACTGAGATAGATGATCTAAACCAGAACGGTGACAGGAGCTTCGAGTTTAGAAATAAGAAGATCAAATCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

197

Amino Acids

22.84

Weight (kDa)

9.92

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc65I	GGTACC	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	438
AccBSI	CCGCTC	1 cut(s)	315
AccII	CGCG	1 cut(s)	295
AciI	CCGC	3 cut(s)	40, 295, 315
AclWI	GGATC	2 cut(s)	135, 218
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	367, 484
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	218, 440
AfiI	CCNNNNNNNGG	4 cut(s)	64, 76, 238, 252
AgsI	TTSAA	4 cut(s)	199, 367, 478, 519
AjnI	CCWGG	1 cut(s)	443
AluBI	AGCT	3 cut(s)	94, 280, 558
AluI	AGCT	3 cut(s)	94, 280, 558
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	118, 412
AlwI	GGATC	2 cut(s)	135, 218
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	2 cut(s)	37, 59
ApoI	RAATTY	2 cut(s)	367, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
Asp718I	GGTACC	1 cut(s)	438
AspA2I	CCTAGG	1 cut(s)	205
AspS9I	GGNCC	4 cut(s)	55, 67, 87, 229
AsuHPI	GGTGA	4 cut(s)	158, 187, 389, 560
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	4 cut(s)	55, 67, 87, 229
AvrII	CCTAGG	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	311
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	118, 412
BfaI	CTAG	3 cut(s)	206, 435, 465
BglI	GCCNNNNNGGC	1 cut(s)	36
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	2 cut(s)	40, 316
BlnI	CCTAGG	1 cut(s)	205
BlsI	GCNGC	2 cut(s)	41, 317
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	4 cut(s)	55, 67, 87, 229
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	4 cut(s)	55, 67, 87, 229
BmiI	GGNNCC	2 cut(s)	29, 440
BmrFI	CCNGG	1 cut(s)	445
BoxI	GACNNNNGTC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	123, 205, 443
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 76, 238, 252
Bse118I	RCCGGY	2 cut(s)	30, 357
Bse1I	ACTGG	1 cut(s)	391
Bse21I	CCTNAGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	3 cut(s)	123, 205, 443
BseLI	CCNNNNNNNGG	4 cut(s)	64, 76, 238, 252
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	391
BseX3I	CGGCCG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	39, 61
BshNI	GGYRCC	1 cut(s)	438
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	31, 58, 65, 358
BslI	CCNNNNNNNGG	4 cut(s)	64, 76, 238, 252
BsmAI	GTCTC	2 cut(s)	118, 412
BsnI	GGCC	2 cut(s)	39, 61
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	7 cut(s)	127, 192, 210, 265, 381, 532, 579
BspACI	CCGC	3 cut(s)	40, 295, 315
BspANI	GGCC	2 cut(s)	39, 61
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	29, 440
BspPI	GGATC	2 cut(s)	135, 218
BspT107I	GGYRCC	1 cut(s)	438
BsrBI	CCGCTC	1 cut(s)	315
BsrFI	RCCGGY	2 cut(s)	30, 357
BsrI	ACTGG	1 cut(s)	391
BssAI	RCCGGY	2 cut(s)	30, 357
BssECI	CCNNGG	3 cut(s)	123, 205, 443
BssMI	GATC	7 cut(s)	127, 192, 210, 265, 381, 532, 579
BssNI	GRCGYC	1 cut(s)	284
BssT1I	CCWWGG	2 cut(s)	123, 205
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	4 cut(s)	157, 406, 509, 548
BstACI	GRCGYC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	171, 522
BstFNI	CGCG	1 cut(s)	295
BstKTI	GATC	7 cut(s)	130, 195, 213, 268, 384, 535, 582
BstMAI	GTCTC	2 cut(s)	118, 412
BstMBI	GATC	7 cut(s)	127, 192, 210, 265, 381, 532, 579
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 277, 315
BstNI	CCWGG	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	427
BstPAI	GACNNNNGTC	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	443
BstUI	CGCG	1 cut(s)	295
BstX2I	RGATCY	2 cut(s)	127, 192
BstYI	RGATCY	2 cut(s)	127, 192
BstZI	CGGCCG	1 cut(s)	37
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	39, 61
BtsI	GCAGTG	2 cut(s)	337, 396
BtsIMutI	CAGTG	4 cut(s)	337, 396, 402, 514
Cac8I	GCNNGC	1 cut(s)	282
Cfr10I	RCCGGY	2 cut(s)	30, 357
Cfr13I	GGNCC	4 cut(s)	55, 67, 87, 229
CpoI	CGGWCCG	1 cut(s)	55
CseI	GACGC	2 cut(s)	273, 457
Csp6I	GTAC	2 cut(s)	217, 439
CspI	CGGWCCG	1 cut(s)	55
CviAII	CATG	3 cut(s)	19, 340, 424
CviJI	RGCY	9 cut(s)	30, 39, 61, 94, 280, 318, 387, 434, 558
CviKI_1	RGCY	9 cut(s)	30, 39, 61, 94, 280, 318, 387, 434, 558
CviQI	GTAC	2 cut(s)	217, 439
DdeI	CTNAG	2 cut(s)	171, 522
DpnI	GATC	7 cut(s)	129, 194, 212, 267, 383, 534, 581
DpnII	GATC	7 cut(s)	127, 192, 210, 265, 381, 532, 579
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	37
EagI	CGGCCG	1 cut(s)	37
EclXI	CGGCCG	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	123, 205
Eco47I	GGWCC	4 cut(s)	55, 67, 87, 229
Eco52I	CGGCCG	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	476
Eco81I	CCTNAGG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	123, 205
ErhI	CCWWGG	2 cut(s)	123, 205
FaeI	CATG	3 cut(s)	22, 343, 427
FaiI	YATR	6 cut(s)	14, 20, 189, 248, 341, 425
FatI	CATG	3 cut(s)	18, 339, 423
Fnu4HI	GCNGC	2 cut(s)	40, 316
Fsp4HI	GCNGC	2 cut(s)	40, 316
FspBI	CTAG	3 cut(s)	206, 435, 465
GluI	GCNGC	2 cut(s)	40, 316
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	39, 61
HapII	CCGG	4 cut(s)	31, 58, 65, 358
HgaI	GACGC	2 cut(s)	273, 457
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	22, 343, 427
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	5 cut(s)	178, 256, 290, 461, 515
HpaII	CCGG	4 cut(s)	31, 58, 65, 358
HphI	GGTGA	4 cut(s)	158, 187, 389, 560
Hpy166II	GTNNAC	3 cut(s)	142, 396, 505
Hpy188I	TCNGA	4 cut(s)	84, 118, 289, 456
Hpy188III	TCNNGA	3 cut(s)	70, 133, 260
Hpy8I	GTNNAC	3 cut(s)	142, 396, 505
Hpy99I	CGWCG	2 cut(s)	224, 266
HpyAV	CCTTC	5 cut(s)	220, 246, 246, 423, 451
HpyCH4III	ACNGT	4 cut(s)	157, 406, 509, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 277, 315
HpyF3I	CTNAG	2 cut(s)	171, 522
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	3 cut(s)	22, 343, 427
KpnI	GGTACC	1 cut(s)	442
Kzo9I	GATC	7 cut(s)	127, 192, 210, 265, 381, 532, 579
LmnI	GCTCC	3 cut(s)	27, 99, 555
MaeI	CTAG	3 cut(s)	206, 435, 465
MaeIII	GTNAC	2 cut(s)	509, 548
MalI	GATC	7 cut(s)	129, 194, 212, 267, 383, 534, 581
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	7 cut(s)	127, 192, 210, 265, 381, 532, 579
MboII	GAAGA	4 cut(s)	94, 97, 187, 589
MflI	RGATCY	2 cut(s)	127, 192
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	2 cut(s)	367, 484
MlyI	GAGTC	3 cut(s)	250, 299, 455
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	72, 78, 155, 194, 242, 509
MspI	CCGG	4 cut(s)	31, 58, 65, 358
MspR9I	CCNGG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	3 cut(s)	36, 277, 315
NdeII	GATC	7 cut(s)	127, 192, 210, 265, 381, 532, 579
NlaIII	CATG	3 cut(s)	22, 343, 427
NlaIV	GGNNCC	2 cut(s)	29, 440
NmuCI	GTSAC	2 cut(s)	509, 548
NspI	RCATGY	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	178, 515
PkrI	GCNGC	2 cut(s)	41, 317
PleI	GAGTC	3 cut(s)	250, 298, 455
PpsI	GAGTC	3 cut(s)	250, 298, 455
PpuMI	RGGWCCY	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	29, 440
PspPI	GGNCC	4 cut(s)	55, 67, 87, 229
PspPPI	RGGWCCY	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	127, 192
RsaI	GTAC	2 cut(s)	218, 440
RsaNI	GTAC	2 cut(s)	217, 439
Rsr2I	CGGWCCG	1 cut(s)	55
RsrII	CGGWCCG	1 cut(s)	55
SatI	GCNGC	2 cut(s)	40, 316
Sau3AI	GATC	7 cut(s)	127, 192, 210, 265, 381, 532, 579
Sau96I	GGNCC	4 cut(s)	55, 67, 87, 229
SchI	GAGTC	3 cut(s)	250, 299, 455
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	9 cut(s)	53, 96, 147, 177, 231, 282, 440, 501, 560
Sfr274I	CTCGAG	1 cut(s)	310
SinI	GGWCC	4 cut(s)	55, 67, 87, 229
SlaI	CTCGAG	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	367, 484
SsiI	CCGC	3 cut(s)	40, 295, 315
SspMI	CTAG	3 cut(s)	206, 435, 465
StyD4I	CCNGG	1 cut(s)	443
StyI	CCWWGG	2 cut(s)	123, 205
TaaI	ACNGT	4 cut(s)	157, 406, 509, 548
TaqI	TCGA	4 cut(s)	213, 311, 561, 587
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	2 cut(s)	367, 484
TauI	GCSGC	2 cut(s)	42, 318
TfiI	GAWTC	2 cut(s)	178, 515
TscAI	CASTG	4 cut(s)	337, 403, 409, 514
TseFI	GTSAC	2 cut(s)	509, 548
Tsp45I	GTSAC	2 cut(s)	509, 548
TspDTI	ATGAA	1 cut(s)	328
TspRI	CASTG	4 cut(s)	337, 403, 409, 514
VpaK11BI	GGWCC	4 cut(s)	55, 67, 87, 229
XapI	RAATTY	2 cut(s)	367, 484
XceI	RCATGY	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	310
XmaJI	CCTAGG	1 cut(s)	205
XspI	CTAG	3 cut(s)	206, 435, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.