Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Reverse (-)

12290073 .. 12301369

Gene Structure 11297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG145100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAACAAGGAGTCGAAAGCAAACGGGAATGGATTCTTGGTGGTAAAGAGAAGCTTGTTGAGACATGGAGGGCAATTGTTGGGGTACAAGAAAGAAGAGGAGAGATTGAAGATTTTGGTCGAAGAGGTTGCTGGGTTTTGGAAGAGATTTAGAACAAAACAGCGACTAAAGTGTCAGACCTCTACAGAAGCAACGTCCTTAGTCGTGATTTTGCTTTCAGCTTTCGAGTGTGCACAGTGCAATGAGAGGAACAATGAGGTTCAGTTTGCTGGTGAGCTTCAACCCAAGGGTTGTAACTACCACTTGAAGGTTCCTTCTGGGGATCCCAAGATGCTTGATAGACAAGTGGTGAAAGCTGAGTTTGCTACTATTAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

126

Amino Acids

14.31

Weight (kDa)

9.51

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_ZPR1	PF03367	70 - 95	5.8e-06	ZPR1 zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	171
AclWI	GGATC	2 cut(s)	317, 330
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	109, 281, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	5 cut(s)	54, 221, 277, 356, 376
AluI	AGCT	5 cut(s)	54, 221, 277, 356, 376
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	317, 330
ApaLI	GTGCAC	1 cut(s)	231
Asp700I	GAANNNNTTC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	284, 361
BaeGI	GKGCMC	1 cut(s)	235
BamHI	GGATCC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BcoDI	GTCTC	1 cut(s)	55
BfmI	CTRYAG	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	312, 324
BmsI	GCATC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	322
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	312, 324
BspPI	GGATC	2 cut(s)	317, 330
BsrDI	GCAATG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	322
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	237
Bst6I	CTCTTC	3 cut(s)	90, 117, 137
BstDEI	CTNAG	2 cut(s)	199, 357
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	54, 221, 277, 356, 376
CviKI_1	RGCY	5 cut(s)	54, 221, 277, 356, 376
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	199, 357
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DrdI	GACNNNNNNGTC	1 cut(s)	171
DseDI	GACNNNNNNGTC	1 cut(s)	171
Eam1104I	CTCTTC	3 cut(s)	90, 117, 137
EarI	CTCTTC	3 cut(s)	90, 117, 137
Eco130I	CCWWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	1 cut(s)	68
FaiI	YATR	1 cut(s)	66
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	2 cut(s)	11, 33
HphI	GGTGA	2 cut(s)	284, 361
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	301, 324
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	2 cut(s)	233, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	199, 357
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	322
LpnPI	CCDG	3 cut(s)	117, 255, 303
LweI	GCATC	1 cut(s)	321
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	4 cut(s)	107, 121, 134, 154
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	6 cut(s)	62, 91, 118, 190, 240, 250
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	372
MunI	CAATTG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	312, 324
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	33
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	312, 324
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	1 cut(s)	321
SfcI	CTRYAG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	3 cut(s)	14, 120, 225
TasI	AATT	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	242
VneI	GTGCAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.