Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003323.1

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

134504 .. 138512

Gene Structure 4009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003323.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggaacagcatggaggcatcctcaacattactcacaatattgggtcgatatcctatctgggtttgtctcgaatgaaacaaagccacgaaattgttgatgaggggaacagcaagatgagtagagggaagacaagaaagtatacctcttttgcgcatcatcttcacattcaagaattgagctttgctggagaaaggaccaagctccacatcttcttctctgtctccgacaccaaggatctccagatcgtgaacctcactcttacagttctctatcaccgtgaggtgaatcgcctccatcagatcttcaaaaccctagggatcgagtacgacaagaaggtcctcccttcggcaaccacaggaaggcctcacggtgatctgcttgtgaagctggcgtcagagtcgcggtggcggaagtgctcgagcggctttgatggtggcagtgagttcatggacaacttgggtcgccaatgcacaaagacaaaccaaaggggggcaaggaccaaagccacgccccaaactcgcaagcagctgccatccttgcccagcgtcggaggccagcagcgcagcgcatcactacacctcccagggcatcatgacaggcttgacagcaacccctcccatctacacctcacatatgcacccaacgcagcaggcaccctttcgcctcactcccttgaacctcagaggccaacttcaccatctccaccaacaggtggatatgataaggacacccacaaggaaagaaagcaagctgaaaaggaaaccatgccatcccaaataagcaatccaaccataacccattacctgaacctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

271

Amino Acids

30.28

Weight (kDa)

9.69

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
Acc16I	TGCGCA	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	653
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccBSI	CCGCTC	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	1 cut(s)	403
AciI	CCGC	3 cut(s)	403, 409, 423
AclWI	GGATC	2 cut(s)	243, 326
AcyI	GRCGYC	1 cut(s)	392
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	6 cut(s)	346, 360, 490, 548, 710, 713
AgsI	TTSAA	3 cut(s)	170, 307, 677
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	5 cut(s)	180, 202, 388, 529, 752
AluI	AGCT	5 cut(s)	180, 202, 388, 529, 752
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	2 cut(s)	72, 226
AlwI	GGATC	2 cut(s)	243, 326
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	3 cut(s)	362, 553, 686
ApeKI	GCWGC	5 cut(s)	526, 529, 559, 564, 647
AspA2I	CCTAGG	1 cut(s)	313
AspLEI	GCGC	3 cut(s)	154, 564, 569
AspS9I	GGNCC	3 cut(s)	195, 337, 498
AsuHPI	GGTGA	4 cut(s)	266, 295, 383, 687
AvaI	CYCGRG	1 cut(s)	418
AvaII	GGWCC	3 cut(s)	195, 337, 498
AvrII	CCTAGG	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	419
BbvI	GCAGC	5 cut(s)	516, 538, 571, 576, 659
BccI	CCATC	6 cut(s)	303, 425, 541, 627, 706, 778
BciT130I	CCWGG	1 cut(s)	585
BcoDI	GTCTC	2 cut(s)	72, 226
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	812
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	6 cut(s)	424, 527, 530, 560, 565, 648
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	6 cut(s)	425, 528, 531, 561, 566, 649
Bme1390I	CCNGG	1 cut(s)	585
Bme18I	GGWCC	3 cut(s)	195, 337, 498
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	195, 337, 498
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	4 cut(s)	27, 163, 578, 598
BpiI	GAAGAC	1 cut(s)	134
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	207, 224
BsaHI	GRCGYC	1 cut(s)	392
BsaJI	CCNNGG	4 cut(s)	231, 313, 583, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	6 cut(s)	346, 360, 490, 548, 710, 713
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	4 cut(s)	231, 313, 583, 584
BseGI	GGATG	3 cut(s)	18, 533, 770
BseLI	CCNNNNNNNGG	6 cut(s)	346, 360, 490, 548, 710, 713
BseMII	CTCAG	1 cut(s)	695
BseXI	GCAGC	5 cut(s)	516, 538, 571, 576, 659
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	403
BshFI	GGCC	3 cut(s)	364, 555, 688
BshNI	GGYRCC	1 cut(s)	653
BsiHKAI	GWGCWC	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	418
BslI	CCNNNNNNNGG	6 cut(s)	346, 360, 490, 548, 710, 713
BsmAI	GTCTC	2 cut(s)	72, 226
BsnI	GGCC	3 cut(s)	364, 555, 688
BsoBI	CYCGRG	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	5 cut(s)	235, 243, 300, 318, 373
BspACI	CCGC	3 cut(s)	403, 409, 423
BspANI	GGCC	3 cut(s)	364, 555, 688
BspCNI	CTCAG	1 cut(s)	694
BspFNI	CGCG	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	655
BspPI	GGATC	2 cut(s)	243, 326
BspT107I	GGYRCC	1 cut(s)	653
BsrBI	CCGCTC	1 cut(s)	423
BssECI	CCNNGG	4 cut(s)	231, 313, 583, 584
BssMI	GATC	5 cut(s)	235, 243, 300, 318, 373
BssNAI	GTATAC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	392
BssT1I	CCWWGG	2 cut(s)	231, 313
Bst1107I	GTATAC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	3 cut(s)	265, 278, 371
BstACI	GRCGYC	1 cut(s)	392
BstC8I	GCNNGC	5 cut(s)	390, 524, 557, 652, 750
BstDEI	CTNAG	1 cut(s)	681
BstF5I	GGATG	3 cut(s)	18, 533, 770
BstFNI	CGCG	1 cut(s)	403
BstHHI	GCGC	3 cut(s)	154, 564, 569
BstKTI	GATC	5 cut(s)	238, 246, 303, 321, 376
BstMAI	GTCTC	2 cut(s)	72, 226
BstMBI	GATC	5 cut(s)	235, 243, 300, 318, 373
BstMWI	GCNNNNNNNGC	6 cut(s)	385, 423, 538, 552, 561, 644
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	1 cut(s)	583
BstSFI	CTRYAG	1 cut(s)	812
BstUI	CGCG	1 cut(s)	403
BstV1I	GCAGC	5 cut(s)	516, 538, 571, 576, 659
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	235, 300
BstYI	RGATCY	2 cut(s)	235, 300
BstZ17I	GTATAC	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	364, 555, 688
BtsCI	GGATG	3 cut(s)	18, 533, 770
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	5 cut(s)	390, 524, 557, 652, 750
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	3 cut(s)	154, 564, 569
Cfr13I	GGNCC	3 cut(s)	195, 337, 498
CseI	GACGC	2 cut(s)	381, 535
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	4 cut(s)	11, 448, 593, 766
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	681
DpnI	GATC	5 cut(s)	237, 245, 302, 320, 375
DpnII	GATC	5 cut(s)	235, 243, 300, 318, 373
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	231, 313
Eco147I	AGGCCT	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	51
Eco47I	GGWCC	3 cut(s)	195, 337, 498
Eco88I	CYCGRG	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	583
EcoRV	GATATC	1 cut(s)	51
EcoT14I	CCWWGG	2 cut(s)	231, 313
ErhI	CCWWGG	2 cut(s)	231, 313
FaeI	CATG	4 cut(s)	14, 451, 596, 769
FaiI	YATR	9 cut(s)	12, 141, 449, 594, 634, 636, 720, 767, 794
FatI	CATG	4 cut(s)	10, 447, 592, 765
FauNDI	CATATG	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	6 cut(s)	424, 527, 530, 560, 565, 648
FokI	GGATG	3 cut(s)	5, 520, 757
Fsp4HI	GCNGC	6 cut(s)	424, 527, 530, 560, 565, 648
FspBI	CTAG	1 cut(s)	314
FspI	TGCGCA	1 cut(s)	153
GlaI	GCGC	3 cut(s)	153, 563, 568
GluI	GCNGC	6 cut(s)	424, 527, 530, 560, 565, 648
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	2 cut(s)	207, 224
HaeIII	GGCC	3 cut(s)	364, 555, 688
HgaI	GACGC	2 cut(s)	381, 535
HhaI	GCGC	3 cut(s)	154, 564, 569
Hin1I	GRCGYC	1 cut(s)	392
Hin1II	CATG	4 cut(s)	14, 451, 596, 769
Hin6I	GCGC	3 cut(s)	152, 562, 567
HinP1I	GCGC	3 cut(s)	152, 562, 567
HinfI	GANTC	2 cut(s)	286, 398
HphI	GGTGA	4 cut(s)	266, 295, 383, 687
Hpy166II	GTNNAC	2 cut(s)	141, 250
Hpy188I	TCNGA	5 cut(s)	226, 300, 397, 551, 684
Hpy188III	TCNNGA	5 cut(s)	69, 170, 241, 247, 593
Hpy8I	GTNNAC	2 cut(s)	141, 250
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	3 cut(s)	328, 354, 354
HpyCH4III	ACNGT	3 cut(s)	265, 278, 371
HpyCH4V	TGCA	2 cut(s)	471, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	385, 423, 538, 552, 561, 644
HpyF3I	CTNAG	1 cut(s)	681
Hsp92I	GRCGYC	1 cut(s)	392
Hsp92II	CATG	4 cut(s)	14, 451, 596, 769
HspAI	GCGC	3 cut(s)	152, 562, 567
Kzo9I	GATC	5 cut(s)	235, 243, 300, 318, 373
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	5 cut(s)	516, 538, 571, 576, 659
LweI	GCATC	4 cut(s)	27, 163, 578, 598
MaeI	CTAG	1 cut(s)	314
MalI	GATC	5 cut(s)	237, 245, 302, 320, 375
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	5 cut(s)	235, 243, 300, 318, 373
MboII	GAAGA	5 cut(s)	139, 152, 202, 205, 295
MflI	RGATCY	2 cut(s)	235, 300
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	2 cut(s)	90, 173
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	3 cut(s)	249, 529, 812
MspA1I	CMGCKG	1 cut(s)	529
MspR9I	CCNGG	1 cut(s)	585
MteI	GCGCNGCGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	403
MwoI	GCNNNNNNNGC	6 cut(s)	385, 423, 538, 552, 561, 644
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	5 cut(s)	235, 243, 300, 318, 373
NlaIII	CATG	4 cut(s)	14, 451, 596, 769
NlaIV	GGNNCC	1 cut(s)	655
NsbI	TGCGCA	1 cut(s)	153
PaeR7I	CTCGAG	1 cut(s)	418
PagI	TCATGA	1 cut(s)	592
PasI	CCCWGGG	1 cut(s)	584
PceI	AGGCCT	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	713
PkrI	GCNGC	6 cut(s)	425, 528, 531, 561, 566, 649
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	1 cut(s)	655
PspPI	GGNCC	3 cut(s)	195, 337, 498
PspPPI	RGGWCCY	1 cut(s)	337
PspXI	VCTCGAGB	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	235, 300
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	6 cut(s)	424, 527, 530, 560, 565, 648
Sau3AI	GATC	5 cut(s)	235, 243, 300, 318, 373
Sau96I	GGNCC	3 cut(s)	195, 337, 498
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	419
SfaNI	GCATC	4 cut(s)	27, 163, 578, 598
SfcI	CTRYAG	1 cut(s)	812
Sfr274I	CTCGAG	1 cut(s)	418
SinI	GGWCC	3 cut(s)	195, 337, 498
SlaI	CTCGAG	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	2 cut(s)	90, 173
SseBI	AGGCCT	1 cut(s)	364
SsiI	CCGC	3 cut(s)	403, 409, 423
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	2 cut(s)	231, 313
TaaI	ACNGT	3 cut(s)	265, 278, 371
TaqI	TCGA	4 cut(s)	47, 70, 321, 419
TasI	AATT	2 cut(s)	90, 173
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	5 cut(s)	526, 529, 559, 564, 647
TspDTI	ATGAA	2 cut(s)	89, 436
TspRI	CASTG	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	713
VpaK11BI	GGWCC	3 cut(s)	195, 337, 498
XhoI	CTCGAG	1 cut(s)	418
XmaJI	CCTAGG	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.