Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

28047507 .. 28052931

Gene Structure 5425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCCTCCTCCAGCGTCTATGCCGCCTCTGCCTCTAGCATCGATGCCGTCTCCGCCTCCGCTCTTTCTAATCATTGGACAGTAGATGCACAAAGACAAACCGAAGGGCAGCAAGGACCAAAGCCACGCCCCAAACTCTCAAGCAGCTGCCATCCTTGCCCAGCGTCGGAGGCCAGCAACGCAGCGCATCACTACACCTCCCAGGGCATCATGACAGGCTTGACAGCAACCCCTCCCATCTACACCTCACATATGCACCCAACGCAGCCCCCAGGCACCCTTTCGCCTCACTCCCTTGAACCTCAGAGGCCAACTTCACCATCTCCACCAACAAGTGGATATGATAAGGGCACCCACAAGGAAAGAAAGCAAGCTGAAAAGGAAACCATGCCATCCCAAATAAGCAATCCAACCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.68

Weight (kDa)

7.88

Isoelectric Point (pI)

61.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	275, 350
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	3 cut(s)	24, 54, 60
AfiI	CCNNNNNNNGG	2 cut(s)	166, 335
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	2 cut(s)	201, 271
AluBI	AGCT	2 cut(s)	147, 374
AluI	AGCT	2 cut(s)	147, 374
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	3 cut(s)	3, 171, 308
ApeKI	GCWGC	5 cut(s)	109, 144, 147, 182, 265
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	2 cut(s)	275, 350
BbvI	GCAGC	5 cut(s)	121, 134, 156, 194, 277
BccI	CCATC	4 cut(s)	159, 245, 328, 400
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	203, 273
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	6 cut(s)	24, 110, 145, 148, 183, 266
BlsI	GCNGC	6 cut(s)	25, 111, 146, 149, 184, 267
Bme1390I	CCNGG	2 cut(s)	203, 273
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	277, 352
BmrFI	CCNGG	2 cut(s)	203, 273
BmsI	GCATC	5 cut(s)	34, 48, 76, 196, 216
BpuEI	CTTGAG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	201, 202, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 335
BseBI	CCWGG	2 cut(s)	203, 273
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	201, 202, 271
BseGI	GGATG	2 cut(s)	151, 392
BseLI	CCNNNNNNNGG	2 cut(s)	166, 335
BseMII	CTCAG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	5 cut(s)	121, 134, 156, 194, 277
BseYI	CCCAGC	1 cut(s)	160
BshFI	GGCC	3 cut(s)	5, 173, 310
BshNI	GGYRCC	2 cut(s)	275, 350
BshVI	ATCGAT	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	166, 335
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	3 cut(s)	5, 173, 310
Bsp1286I	GDGCHC	1 cut(s)	353
BspACI	CCGC	3 cut(s)	24, 54, 60
BspANI	GGCC	3 cut(s)	5, 173, 310
BspCNI	CTCAG	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	277, 352
BspT107I	GGYRCC	2 cut(s)	275, 350
BsrBI	CCGCTC	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	201, 202, 271
Bst2UI	CCWGG	2 cut(s)	203, 273
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	175, 372
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	151, 392
BstHHI	GCGC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 53, 156, 170, 179, 262
BstNI	CCWGG	2 cut(s)	203, 273
BstSCI	CCNGG	2 cut(s)	201, 271
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	5 cut(s)	121, 134, 156, 194, 277
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	5, 173, 310
BsuTUI	ATCGAT	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	151, 392
Cac8I	GCNNGC	2 cut(s)	175, 372
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	116
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	2 cut(s)	4, 153
CviAII	CATG	2 cut(s)	211, 388
CviJI	RGCY	8 cut(s)	5, 124, 147, 173, 219, 268, 310, 374
CviKI_1	RGCY	8 cut(s)	5, 124, 147, 173, 219, 268, 310, 374
DdeI	CTNAG	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	201, 271
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	2 cut(s)	214, 391
FaiI	YATR	8 cut(s)	21, 212, 252, 254, 342, 389, 416, 418
FatI	CATG	2 cut(s)	210, 387
FauNDI	CATATG	2 cut(s)	252, 416
Fnu4HI	GCNGC	6 cut(s)	24, 110, 145, 148, 183, 266
FokI	GGATG	2 cut(s)	138, 379
Fsp4HI	GCNGC	6 cut(s)	24, 110, 145, 148, 183, 266
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	6 cut(s)	24, 110, 145, 148, 183, 266
GsaI	CCCAGC	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	5, 173, 310
HgaI	GACGC	2 cut(s)	4, 153
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	214, 391
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HphI	GGTGA	1 cut(s)	309
Hpy188I	TCNGA	2 cut(s)	169, 306
Hpy188III	TCNNGA	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	89, 256
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 53, 156, 170, 179, 262
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	214, 391
HspAI	GCGC	1 cut(s)	185
LpnPI	CCDG	8 cut(s)	25, 174, 187, 188, 201, 215, 258, 285
Lsp1109I	GCAGC	5 cut(s)	121, 134, 156, 194, 277
LweI	GCATC	5 cut(s)	34, 48, 76, 196, 216
MaeI	CTAG	1 cut(s)	36
MbiI	CCGCTC	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	203, 273
MvaI	CCWGG	2 cut(s)	203, 273
MwoI	GCNNNNNNNGC	6 cut(s)	29, 53, 156, 170, 179, 262
NdeI	CATATG	2 cut(s)	252, 416
NlaIII	CATG	2 cut(s)	214, 391
NlaIV	GGNNCC	2 cut(s)	277, 352
PagI	TCATGA	1 cut(s)	210
PasI	CCCWGGG	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	6 cut(s)	25, 111, 146, 149, 184, 267
Psp6I	CCWGG	2 cut(s)	201, 271
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	2 cut(s)	201, 271
PspN4I	GGNNCC	2 cut(s)	277, 352
PspPI	GGNCC	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	147
SatI	GCNGC	6 cut(s)	24, 110, 145, 148, 183, 266
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	203, 273
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	5 cut(s)	149, 200, 248, 304, 376
SfaNI	GCATC	5 cut(s)	34, 48, 76, 196, 216
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SsiI	CCGC	3 cut(s)	24, 54, 60
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	201, 271
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	42
TauI	GCSGC	1 cut(s)	26
TseI	GCWGC	5 cut(s)	109, 144, 147, 182, 265
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	116
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.