Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

64615024 .. 64633157

Gene Structure 18134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG378500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCCGAGAATGCAAAGCTACAACGAACAAGGACTATCCGAGCGGACCGAGCTCCACATCTTCTCTGTCTCCGACACCAAGGATATCCAGATCGTGAACCTCACTCTTACAGCTCTCTATCACCGTGAGGTGAATCGCCTCCATCAGATCTTCAAAACCCTAGGGATCGAGTACGACGAGAAGGTCCTCCCTTCGACAACCACAGGAAGGCCTCACGGAGATCTGCTTGTGAAGCTGGCGTCAGAGTCGCGATGGCGGAAGTGCTCGAGCGGCTTTGATGGTGGTAGTGGGTTCATGGACGACTTGGGTCGCCGGTATTTGAATTTCATTGCCGATGATTTGCCCAATAGTTATATAAACTCTGTTCATGGAACAAAGATCATCCGATATGCACTTGCATGGCTACAACTTTTTTGTGGTTGGATCGGAAAGGATGGGTTGCTATCAGATTCAAAGCCAGTAATCCAGGCGTTTGGTTTTTACACTGTAATTTGGACCGACATCTCAGTTGGGGTATGGACACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

175

Amino Acids

19.94

Weight (kDa)

6.96

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccBSI	CCGCTC	2 cut(s)	43, 270
AccII	CGCG	1 cut(s)	250
AciI	CCGC	3 cut(s)	43, 256, 270
AclWI	GGATC	2 cut(s)	173, 431
AcsI	RAATTY	1 cut(s)	322
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	154, 322, 453
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	4 cut(s)	18, 52, 113, 235
AluI	AGCT	4 cut(s)	18, 52, 113, 235
Alw21I	GWGCWC	2 cut(s)	54, 266
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	173, 431
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	322
AspA2I	CCTAGG	1 cut(s)	160
AspS9I	GGNCC	3 cut(s)	45, 184, 495
AsuHPI	GGTGA	2 cut(s)	113, 142
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	3 cut(s)	45, 184, 495
AvrII	CCTAGG	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	54, 266
BccI	CCATC	4 cut(s)	150, 246, 272, 428
BciT130I	CCWGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	161
BglII	AGATCT	2 cut(s)	147, 220
BisI	GCNGC	1 cut(s)	271
BlnI	CCTAGG	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	3 cut(s)	45, 184, 495
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	3 cut(s)	45, 184, 495
BmrFI	CCNGG	1 cut(s)	467
BoxI	GACNNNNGTC	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	78, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	78, 160
BseGI	GGATG	2 cut(s)	381, 439
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	2 cut(s)	54, 266
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	54, 266
Bsp143I	GATC	6 cut(s)	90, 147, 165, 220, 378, 423
Bsp68I	TCGCGA	1 cut(s)	250
BspACI	CCGC	3 cut(s)	43, 256, 270
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	518
BspFNI	CGCG	1 cut(s)	250
BspPI	GGATC	2 cut(s)	173, 431
BsrBI	CCGCTC	2 cut(s)	43, 270
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	78, 160
BssMI	GATC	6 cut(s)	90, 147, 165, 220, 378, 423
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	78, 160
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	3 cut(s)	125, 487, 525
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	505
BstF5I	GGATG	2 cut(s)	381, 439
BstFNI	CGCG	1 cut(s)	250
BstKTI	GATC	6 cut(s)	93, 150, 168, 223, 381, 426
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	6 cut(s)	90, 147, 165, 220, 378, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 49, 232, 270
BstNI	CCWGG	1 cut(s)	467
BstPAI	GACNNNNGTC	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	147, 220
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	2 cut(s)	147, 220
BsuRI	GGCC	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	381, 439
BtsIMutI	CAGTG	1 cut(s)	483
BtuMI	TCGCGA	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	3 cut(s)	45, 184, 495
CpoI	CGGWCCG	1 cut(s)	45
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	172
CspI	CGGWCCG	1 cut(s)	45
CviAII	CATG	3 cut(s)	295, 368, 399
CviJI	RGCY	8 cut(s)	18, 52, 113, 211, 235, 273, 403, 457
CviKI_1	RGCY	8 cut(s)	18, 52, 113, 211, 235, 273, 403, 457
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	6 cut(s)	92, 149, 167, 222, 380, 425
DpnII	GATC	6 cut(s)	90, 147, 165, 220, 378, 423
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	78, 160
Eco147I	AGGCCT	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	3 cut(s)	45, 184, 495
Eco53kI	GAGCTC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	465
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	78, 160
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	2 cut(s)	78, 160
FaeI	CATG	3 cut(s)	298, 371, 402
FaiI	YATR	7 cut(s)	296, 354, 356, 369, 390, 400, 517
FatI	CATG	3 cut(s)	294, 367, 398
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	368, 446
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	313
HgaI	GACGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	298, 371, 402
HinfI	GANTC	3 cut(s)	133, 245, 449
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	2 cut(s)	113, 142
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	7 cut(s)	40, 73, 147, 244, 386, 428, 448
Hpy188III	TCNNGA	3 cut(s)	88, 94, 249
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	175, 201, 201
HpyCH4III	ACNGT	3 cut(s)	125, 487, 525
HpyCH4V	TGCA	3 cut(s)	13, 392, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 49, 232, 270
HpyF3I	CTNAG	1 cut(s)	505
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	298, 371, 402
Kzo9I	GATC	6 cut(s)	90, 147, 165, 220, 378, 423
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	7 cut(s)	101, 189, 221, 326, 452, 471, 479
MaeI	CTAG	1 cut(s)	161
MalI	GATC	6 cut(s)	92, 149, 167, 222, 380, 425
MbiI	CCGCTC	2 cut(s)	43, 270
MboI	GATC	6 cut(s)	90, 147, 165, 220, 378, 423
MboII	GAAGA	2 cut(s)	52, 142
MflI	RGATCY	2 cut(s)	147, 220
MhlI	GDGCHC	2 cut(s)	54, 266
MluCI	AATT	2 cut(s)	322, 489
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	2 cut(s)	96, 401
MnlI	CCTC	5 cut(s)	110, 121, 149, 197, 222
MslI	CAYNNNNRTG	1 cut(s)	397
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	10, 49, 232, 270
NdeII	GATC	6 cut(s)	90, 147, 165, 220, 378, 423
NlaIII	CATG	3 cut(s)	298, 371, 402
NmeAIII	GCCGAG	1 cut(s)	30
NruI	TCGCGA	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	133, 449
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspPI	GGNCC	3 cut(s)	45, 184, 495
PspPPI	RGGWCCY	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	147, 220
RruI	TCGCGA	1 cut(s)	250
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	397
Rsr2I	CGGWCCG	1 cut(s)	45
RsrII	CGGWCCG	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	6 cut(s)	90, 147, 165, 220, 378, 423
Sau96I	GGNCC	3 cut(s)	45, 184, 495
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	54, 266
SetI	ASST	7 cut(s)	20, 54, 102, 115, 132, 186, 237
Sfr274I	CTCGAG	1 cut(s)	265
SinI	GGWCC	3 cut(s)	45, 184, 495
SlaI	CTCGAG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	322, 489
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	3 cut(s)	43, 256, 270
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	2 cut(s)	78, 160
TaaI	ACNGT	3 cut(s)	125, 487, 525
TaqI	TCGA	3 cut(s)	168, 194, 266
TaqII	GACCGA	2 cut(s)	62, 512
TasI	AATT	2 cut(s)	322, 489
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	133, 449
TscAI	CASTG	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	283, 316, 356
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	3 cut(s)	45, 184, 495
XapI	RAATTY	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	160
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.