Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011593.1

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Reverse (-)

47286 .. 48237

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011593.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgcgcaaagaggaccgcgcggcacttgcaagtcagtcaagtgagtaccttgcaaggaacaatgaaagccacacgatattaaaaaggaccaagctatacatcttctactctatctccgacaccaaggatctccagatcgtgaacctcactcttacggttctctatcaccctaaggtgaatcgcctccatcagatcttcaaaactctagggatcgagtacgacgagaaggtcctcccttcggcaaccacaggaaggcctcacggcaatctgcttgtgaagctggtgttagagtcgctgtggcggaagtgctcgagcggctttgatggtggcagtgggttcatggacgacttgggtcactggaatttgaatttcgttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

126

Amino Acids

14.34

Weight (kDa)

9.07

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc16I	TGCGCA	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	315
AccII	CGCG	2 cut(s)	18, 20
AciI	CCGC	4 cut(s)	16, 20, 301, 315
AclWI	GGATC	2 cut(s)	135, 218
AcsI	RAATTY	2 cut(s)	361, 367
AfaI	GTAC	2 cut(s)	47, 218
AfiI	CCNNNNNNNGG	2 cut(s)	238, 252
AgsI	TTSAA	2 cut(s)	199, 367
AluBI	AGCT	2 cut(s)	94, 280
AluI	AGCT	2 cut(s)	94, 280
Alw21I	GWGCWC	1 cut(s)	311
AlwI	GGATC	2 cut(s)	135, 218
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	361, 367
AspLEI	GCGC	2 cut(s)	6, 20
AspS9I	GGNCC	3 cut(s)	13, 87, 229
AsuHPI	GGTGA	2 cut(s)	158, 187
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	3 cut(s)	13, 87, 229
AxyI	CCTNAGG	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	311
BccI	CCATC	2 cut(s)	195, 317
BceAI	ACGGC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	206
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	2 cut(s)	21, 316
BlsI	GCNGC	2 cut(s)	22, 317
Bme18I	GGWCC	3 cut(s)	13, 87, 229
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	13, 87, 229
BoxI	GACNNNNGTC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 252
Bse1I	ACTGG	1 cut(s)	362
Bse21I	CCTNAGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	238, 252
BseNI	ACTGG	1 cut(s)	362
Bsh1236I	CGCG	2 cut(s)	18, 20
BshFI	GGCC	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	238, 252
BsnI	GGCC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	4 cut(s)	127, 135, 192, 210
BspACI	CCGC	4 cut(s)	16, 20, 301, 315
BspANI	GGCC	1 cut(s)	256
BspFNI	CGCG	2 cut(s)	18, 20
BspPI	GGATC	2 cut(s)	135, 218
BsrBI	CCGCTC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	4 cut(s)	127, 135, 192, 210
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	18, 20
BstHHI	GCGC	2 cut(s)	6, 20
BstKTI	GATC	4 cut(s)	130, 138, 195, 213
BstMBI	GATC	4 cut(s)	127, 135, 192, 210
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 277, 315
BstPAI	GACNNNNGTC	1 cut(s)	351
BstUI	CGCG	2 cut(s)	18, 20
BstX2I	RGATCY	2 cut(s)	127, 192
BstYI	RGATCY	2 cut(s)	127, 192
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	337, 355
CfoI	GCGC	2 cut(s)	6, 20
Cfr13I	GGNCC	3 cut(s)	13, 87, 229
Csp6I	GTAC	2 cut(s)	46, 217
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	5 cut(s)	69, 94, 256, 280, 318
CviKI_1	RGCY	5 cut(s)	69, 94, 256, 280, 318
CviQI	GTAC	2 cut(s)	46, 217
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	4 cut(s)	129, 137, 194, 212
DpnII	GATC	4 cut(s)	127, 135, 192, 210
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	13, 87, 229
Eco81I	CCTNAGG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	343
FaiI	YATR	2 cut(s)	97, 341
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	21, 316
Fsp4HI	GCNGC	2 cut(s)	21, 316
FspBI	CTAG	1 cut(s)	206
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 19
GluI	GCNGC	2 cut(s)	21, 316
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	256
HhaI	GCGC	2 cut(s)	6, 20
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	2 cut(s)	4, 18
HinP1I	GCGC	2 cut(s)	4, 18
HinfI	GANTC	2 cut(s)	178, 290
HphI	GGTGA	2 cut(s)	158, 187
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	118, 192
Hpy188III	TCNNGA	2 cut(s)	133, 139
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	220, 246, 246
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	29, 53
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 277, 315
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	2 cut(s)	4, 18
Kzo9I	GATC	4 cut(s)	127, 135, 192, 210
LpnPI	CCDG	4 cut(s)	146, 234, 266, 343
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	4 cut(s)	129, 137, 194, 212
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	4 cut(s)	127, 135, 192, 210
MboII	GAAGA	2 cut(s)	94, 187
MflI	RGATCY	2 cut(s)	127, 192
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	2 cut(s)	361, 367
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	4, 155, 194, 242, 267
MseI	TTAA	1 cut(s)	80
MvnI	CGCG	2 cut(s)	18, 20
MwoI	GCNNNNNNNGC	3 cut(s)	26, 277, 315
NdeII	GATC	4 cut(s)	127, 135, 192, 210
NlaIII	CATG	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	353
NsbI	TGCGCA	1 cut(s)	5
PaeR7I	CTCGAG	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	22, 317
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	229
PspPI	GGNCC	3 cut(s)	13, 87, 229
PspPPI	RGGWCCY	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	127, 192
RsaI	GTAC	2 cut(s)	47, 218
RsaNI	GTAC	2 cut(s)	46, 217
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	2 cut(s)	21, 316
Sau3AI	GATC	4 cut(s)	127, 135, 192, 210
Sau96I	GGNCC	3 cut(s)	13, 87, 229
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	6 cut(s)	51, 96, 147, 177, 231, 282
Sfr274I	CTCGAG	1 cut(s)	310
SinI	GGWCC	3 cut(s)	13, 87, 229
SlaI	CTCGAG	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	361, 367
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	4 cut(s)	16, 20, 301, 315
SspMI	CTAG	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	213, 311
TasI	AATT	2 cut(s)	361, 367
TauI	GCSGC	2 cut(s)	23, 318
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	2 cut(s)	337, 362
TseFI	GTSAC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	78, 328
TspRI	CASTG	2 cut(s)	337, 362
VpaK11BI	GGWCC	3 cut(s)	13, 87, 229
XapI	RAATTY	2 cut(s)	361, 367
XhoI	CTCGAG	1 cut(s)	310
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.