Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

47066972 .. 47070640

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATCTTTAAGAGGGAAAGGTCATTTTCAGATGCACAAAGACAAACCAAAGAGCGGCAAGGGCCAAAGCCACGCCCCAAACTCGCAAGCAGCTGCCATCCTTACCCAGCGTCGGAGGCCAGCAACGCAGCGCATCACTACACCTCCCAGGGCATCATGACAGGCTTGACAGCAACCCCTCCCATCTACACCTCACATATGCACCCAACGCAGCCCCCAGGCACCCTTTCGCCTCACTCCCTTGAACCTCAGAGGCCAACTTCACCATCTCCACCAACAGGTGGATATGATAAGGACACCCACAAGGAAAGAAAGCAAGCTGAAAAGGAAACCATGCCATCCCAAATAAGCAATCCAACCATAGCCCATTACCTGAACCTGACAGTTGATTTGGGAGATTGTCAAGAAGAACAACTCCTTGGTCAAGCAGTTCGGTTGGAGCCAAGCCGGCGTCCGTCGGTCCGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.8

Weight (kDa)

9.14

Isoelectric Point (pI)

67.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	451
AfiI	CCNNNNNNNGG	4 cut(s)	54, 112, 278, 281
AgsI	TTSAA	2 cut(s)	245, 469
AjnI	CCWGG	2 cut(s)	147, 217
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	2 cut(s)	93, 320
AluI	AGCT	2 cut(s)	93, 320
AoxI	GGCC	3 cut(s)	62, 117, 254
ApeKI	GCWGC	4 cut(s)	90, 93, 128, 211
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	62, 460
AsuHPI	GGTGA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	221
BbvI	GCAGC	4 cut(s)	80, 102, 140, 223
BccI	CCATC	4 cut(s)	105, 191, 274, 346
BciT130I	CCWGG	2 cut(s)	149, 219
BglI	GCCNNNNNGGC	1 cut(s)	448
BisI	GCNGC	5 cut(s)	56, 91, 94, 129, 212
BlsI	GCNGC	5 cut(s)	57, 92, 95, 130, 213
Bme1390I	CCNGG	2 cut(s)	149, 219
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	62, 460
BmiI	GGNNCC	3 cut(s)	223, 441, 477
BmrFI	CCNGG	2 cut(s)	149, 219
BmsI	GCATC	3 cut(s)	22, 142, 162
BsaHI	GRCGYC	1 cut(s)	451
BsaJI	CCNNGG	4 cut(s)	147, 148, 217, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 112, 278, 281
Bse118I	RCCGGY	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	149, 219
BseDI	CCNNGG	4 cut(s)	147, 148, 217, 418
BseGI	GGATG	2 cut(s)	97, 338
BseLI	CCNNNNNNNGG	4 cut(s)	54, 112, 278, 281
BseMII	CTCAG	1 cut(s)	263
BseXI	GCAGC	4 cut(s)	80, 102, 140, 223
BseYI	CCCAGC	1 cut(s)	106
BshFI	GGCC	3 cut(s)	64, 119, 256
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	448
BslI	CCNNNNNNNGG	4 cut(s)	54, 112, 278, 281
BsnI	GGCC	3 cut(s)	64, 119, 256
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	3 cut(s)	64, 119, 256
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	223, 441, 477
BspT107I	GGYRCC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	447
BssECI	CCNNGG	4 cut(s)	147, 148, 217, 418
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	451
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	2 cut(s)	149, 219
Bst4CI	ACNGT	1 cut(s)	385
BstACI	GRCGYC	1 cut(s)	451
BstC8I	GCNNGC	4 cut(s)	88, 121, 318, 449
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	97, 338
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 116, 125, 208, 448
BstNI	CCWGG	2 cut(s)	149, 219
BstSCI	CCNGG	2 cut(s)	147, 217
BstV1I	GCAGC	4 cut(s)	80, 102, 140, 223
BsuRI	GGCC	3 cut(s)	64, 119, 256
BtsCI	GGATG	2 cut(s)	97, 338
Cac8I	GCNNGC	4 cut(s)	88, 121, 318, 449
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	2 cut(s)	62, 460
CpoI	CGGWCCG	1 cut(s)	460
CseI	GACGC	2 cut(s)	99, 440
CspI	CGGWCCG	1 cut(s)	460
CviAII	CATG	2 cut(s)	157, 334
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	147, 217
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	2 cut(s)	160, 337
FaiI	YATR	6 cut(s)	158, 198, 200, 288, 335, 362
FatI	CATG	2 cut(s)	156, 333
FauNDI	CATATG	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	56, 91, 94, 129, 212
FokI	GGATG	2 cut(s)	84, 325
Fsp4HI	GCNGC	5 cut(s)	56, 91, 94, 129, 212
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	5 cut(s)	56, 91, 94, 129, 212
GsaI	CCCAGC	1 cut(s)	110
HaeIII	GGCC	3 cut(s)	64, 119, 256
HapII	CCGG	1 cut(s)	448
HgaI	GACGC	2 cut(s)	99, 440
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	160, 337
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	1 cut(s)	255
Hpy188I	TCNGA	3 cut(s)	31, 115, 252
Hpy188III	TCNNGA	2 cut(s)	157, 404
Hpy99I	CGWCG	2 cut(s)	115, 460
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	2 cut(s)	35, 202
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 116, 125, 208, 448
HpyF3I	CTNAG	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	2 cut(s)	160, 337
HspAI	GCGC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	447
KroNI	GCCGGC	1 cut(s)	449
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	439, 475
Lsp1109I	GCAGC	4 cut(s)	80, 102, 140, 223
LweI	GCATC	3 cut(s)	22, 142, 162
MalI	GATC	1 cut(s)	5
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	419
MmeI	TCCRAC	3 cut(s)	93, 380, 417
MroNI	GCCGGC	1 cut(s)	447
MseI	TTAA	2 cut(s)	9, 505
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	2 cut(s)	149, 219
MvaI	CCWGG	2 cut(s)	149, 219
MwoI	GCNNNNNNNGC	5 cut(s)	61, 116, 125, 208, 448
NaeI	GCCGGC	1 cut(s)	449
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	1 cut(s)	3
NgoMIV	GCCGGC	1 cut(s)	447
NlaIII	CATG	2 cut(s)	160, 337
NlaIV	GGNNCC	3 cut(s)	223, 441, 477
PagI	TCATGA	1 cut(s)	156
PasI	CCCWGGG	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	5 cut(s)	57, 92, 95, 130, 213
Psp6I	CCWGG	2 cut(s)	147, 217
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	2 cut(s)	147, 217
PspN4I	GGNNCC	3 cut(s)	223, 441, 477
PspPI	GGNCC	2 cut(s)	62, 460
PvuII	CAGCTG	1 cut(s)	93
Rsr2I	CGGWCCG	1 cut(s)	460
RsrII	CGGWCCG	1 cut(s)	460
SaqAI	TTAA	2 cut(s)	9, 505
SatI	GCNGC	5 cut(s)	56, 91, 94, 129, 212
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	62, 460
ScrFI	CCNGG	2 cut(s)	149, 219
SfaNI	GCATC	3 cut(s)	22, 142, 162
SinI	GGWCC	1 cut(s)	460
SsiI	CCGC	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	147, 217
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	385
TaqII	GACCGA	1 cut(s)	448
TauI	GCSGC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	9, 505
Tru9I	TTAA	2 cut(s)	9, 505
TseI	GCWGC	4 cut(s)	90, 93, 128, 211
TspGWI	ACGGA	2 cut(s)	444, 452
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.