Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

85692440 .. 85702260

Gene Structure 9821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG506900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAAGCAAAAGGTCGTAAAAGCATTCAACACAGCATGGAGGGACATTGAACTGAAATTTGTCATTCTTTTATTGATTGCTTCCTTTGATTCAGAGAACAACAAGGGAAAGGTCATTTTCAGATGCACAAAGACAAACCAAAGAGGGGCAAGGACCAAAGCCACGCCCCAAACTCGCAAGCAGCTGCCATCCTTGCCCAGCGTCGGAGGCCAGCAGCGCAGCGCATCACTACACCTCCCAGGGCATCATGACAGGCTTGACAGCAACCCCTCCCATCTACACCTCACATATGCACCCAACGCAGCAGGCACCCTTTCGCCTCACTCCCTTGAACCTCAGAGGCCAACTTCACCATCTCCACCAACAGGTGGATATGATAAGGACACCCACAAGGAAAGAAAGCAAGCTGAAAAGGAAACCATGCCATCCCAAATAAGCAATCCAACCATAACCCATTACCTGAACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

10.0

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	56
AfiI	CCNNNNNNNGG	4 cut(s)	145, 203, 365, 368
AgsI	TTSAA	3 cut(s)	28, 50, 332
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	2 cut(s)	184, 407
AluI	AGCT	2 cut(s)	184, 407
AoxI	GGCC	2 cut(s)	208, 341
ApeKI	GCWGC	5 cut(s)	181, 184, 214, 219, 302
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	219, 224
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	308
BbvI	GCAGC	5 cut(s)	171, 193, 226, 231, 314
BccI	CCATC	4 cut(s)	196, 282, 361, 433
BciT130I	CCWGG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	467
BisI	GCNGC	5 cut(s)	182, 185, 215, 220, 303
BlsI	GCNGC	5 cut(s)	183, 186, 216, 221, 304
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	3 cut(s)	113, 233, 253
BsaJI	CCNNGG	2 cut(s)	238, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 203, 365, 368
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	238, 239
BseGI	GGATG	2 cut(s)	188, 425
BseLI	CCNNNNNNNGG	4 cut(s)	145, 203, 365, 368
BseMII	CTCAG	1 cut(s)	350
BseXI	GCAGC	5 cut(s)	171, 193, 226, 231, 314
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	2 cut(s)	210, 343
BshNI	GGYRCC	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	4 cut(s)	145, 203, 365, 368
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	210, 343
BspANI	GGCC	2 cut(s)	210, 343
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	238, 239
Bst2UI	CCWGG	1 cut(s)	240
BstC8I	GCNNGC	4 cut(s)	179, 212, 307, 405
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	188, 425
BstHHI	GCGC	2 cut(s)	219, 224
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 207, 216, 299
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	5 cut(s)	171, 193, 226, 231, 314
BsuRI	GGCC	2 cut(s)	210, 343
BtsCI	GGATG	2 cut(s)	188, 425
Cac8I	GCNNGC	4 cut(s)	179, 212, 307, 405
CciI	TCATGA	1 cut(s)	247
CfoI	GCGC	2 cut(s)	219, 224
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	1 cut(s)	190
CviAII	CATG	3 cut(s)	36, 248, 421
CviJI	RGCY	6 cut(s)	161, 184, 210, 256, 343, 407
CviKI_1	RGCY	6 cut(s)	161, 184, 210, 256, 343, 407
DdeI	CTNAG	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	39, 251, 424
FaiI	YATR	7 cut(s)	37, 249, 289, 291, 375, 422, 449
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	3 cut(s)	35, 247, 420
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	5 cut(s)	182, 185, 215, 220, 303
FokI	GGATG	2 cut(s)	175, 412
Fsp4HI	GCNGC	5 cut(s)	182, 185, 215, 220, 303
GlaI	GCGC	2 cut(s)	218, 223
GluI	GCNGC	5 cut(s)	182, 185, 215, 220, 303
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	210, 343
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	2 cut(s)	219, 224
Hin1II	CATG	3 cut(s)	39, 251, 424
Hin6I	GCGC	2 cut(s)	217, 222
HinP1I	GCGC	2 cut(s)	217, 222
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	342
Hpy188I	TCNGA	4 cut(s)	94, 122, 206, 339
Hpy188III	TCNNGA	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	126, 293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 207, 216, 299
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	39, 251, 424
HspAI	GCGC	2 cut(s)	217, 222
LpnPI	CCDG	7 cut(s)	211, 224, 225, 238, 252, 291, 351
Lsp1109I	GCAGC	5 cut(s)	171, 193, 226, 231, 314
LweI	GCATC	3 cut(s)	113, 233, 253
MluCI	AATT	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	184, 467
MnlI	CCTC	9 cut(s)	33, 137, 200, 245, 280, 293, 330, 333, 345
MspA1I	CMGCKG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	240
MteI	GCGCNGCGC	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	4 cut(s)	193, 207, 216, 299
NdeI	CATATG	1 cut(s)	289
NlaIII	CATG	3 cut(s)	39, 251, 424
NlaIV	GGNNCC	1 cut(s)	310
PagI	TCATGA	1 cut(s)	247
PasI	CCCWGGG	1 cut(s)	239
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	5 cut(s)	183, 186, 216, 221, 304
Psp6I	CCWGG	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	184
SatI	GCNGC	5 cut(s)	182, 185, 215, 220, 303
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	240
SfaNI	GCATC	3 cut(s)	113, 233, 253
SfcI	CTRYAG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	153
Sse9I	AATT	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	238
TasI	AATT	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	89
TseI	GCWGC	5 cut(s)	181, 184, 214, 219, 302
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.