Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005558

Physical Location & Seq

Genomic Coordinates Forward (+)

31130942 .. 31133854

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCACTCGCCCTCGCTGCCGCCGCGGGAGCGACAACTCCAAACCTTCAGAACCAATTTCGGGTGTCAACTCCAATTCATAAGATACCAAGCTGGTGCGTGCTTTAGGTGGAGCTGTAGCGCGGTCTTCGCTTCTGGGGTTGCTTTTTTCTCTAGGAAAAGAAGGTATTGCAGCAAGAACAGGAAGGTTAAGCATTCTTCTTCTAATTCTGCTATGCAACGACACTTTGTTTCGTGTAAAGATGTTTTCAAGAGCCTTGAAACACTTCCTATGCTTCACCATGTGCAGGAATTGTGCTGTGTTCTTGTGATATACTTAGTGCTTGGAACACCCACCAAATTAAGGACCGAGCTCCACATCTTCTCCGTCTCCGACACCAAGGATCTCCAGATCGTGAACCTCACTCTTACAGCTCTCTATCATCGTGAGGTGAATCGCCTCCATCAGATCTTCAAACCCCTAGGGATGGAGTATGACGAGAAGGTCCTCCCTTCGGCAACCACAGGAAGGCCTCGCAGCGATCTGCTTGTGAAGCTGGCGTCAGAGTCGCGGTGGCGGAAGTGCTCGAGCGGCTTTGATGGTGGCAGTGGGTTCATGGACGACTTGGGTCGCCGTGGAGATGAGAGACTGAGGAAAGCATATGGGTTTAGAAACCTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

221

Amino Acids

25.3

Weight (kDa)

9.92

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005558)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329171 RchiOBHm_Chr3g0465871 RchiOBHm_Chr3g0465881 RchiOBHm_Chr5g0077491
rosa_laevigata	RLG00000003324 RLG00000018512 RLG00000022062
rosa_multiflora	Rmu_co8434517.1_g000001 Rmu_sc0000704.1_g000010 Rmu_sc0001524.1_g000020 Rmu_sc0003323.1_g000019 Rmu_sc0005816.1_g000009 Rmu_sc0007705.1_g000011 Rmu_sc0009386.1_g000005 Rmu_sc0011593.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362020
rosa_rugosa	Rorug02G0311000
rosa_samantha	Rh1BG155000 Rh1CG078400 Rh1DG084800 Rh1DG455000 Rh2BG224200 Rh3BG145100 Rh3DG146200 Rh5AG378500 Rh5AG506900 Rh5CG262800 Rh5CG400500
rosa_wichuraiana	Rw3G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	482
AccBSI	CCGCTC	1 cut(s)	570
AccII	CGCG	3 cut(s)	25, 122, 550
AciI	CCGC	7 cut(s)	20, 23, 25, 122, 550, 556, 570
AclWI	GGATC	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	539
AdeI	CACNNNGTG	1 cut(s)	283
AfiI	CCNNNNNNNGG	6 cut(s)	60, 286, 342, 466, 493, 507
AgsI	TTSAA	3 cut(s)	250, 260, 454
AluBI	AGCT	5 cut(s)	92, 114, 352, 413, 535
AluI	AGCT	5 cut(s)	92, 114, 352, 413, 535
Alw21I	GWGCWC	2 cut(s)	354, 566
Alw26I	GTCTC	2 cut(s)	373, 619
AlwI	GGATC	1 cut(s)	390
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	3 cut(s)	16, 171, 516
Asp700I	GAANNNNTTC	1 cut(s)	264
AspA2I	CCTAGG	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	345, 484
AsuHPI	GGTGA	2 cut(s)	269, 442
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	2 cut(s)	345, 484
AvrII	CCTAGG	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	354, 566
BbvI	GCAGC	3 cut(s)	3, 183, 528
BccI	CCATC	3 cut(s)	450, 460, 572
BceAI	ACGGC	1 cut(s)	597
BcoDI	GTCTC	2 cut(s)	373, 619
BfaI	CTAG	2 cut(s)	153, 461
BfmI	CTRYAG	1 cut(s)	115
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	6 cut(s)	17, 20, 23, 172, 517, 571
BlnI	CCTAGG	1 cut(s)	460
BlsI	GCNGC	6 cut(s)	18, 21, 24, 173, 518, 572
Bme18I	GGWCC	2 cut(s)	345, 484
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	345, 484
BoxI	GACNNNNGTC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	539
BsaJI	CCNNGG	4 cut(s)	23, 378, 460, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	6 cut(s)	60, 286, 342, 466, 493, 507
BseDI	CCNNGG	4 cut(s)	23, 378, 460, 613
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	6 cut(s)	60, 286, 342, 466, 493, 507
BseMII	CTCAG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	3, 183, 528
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	3 cut(s)	25, 122, 550
BshFI	GGCC	1 cut(s)	511
BsiHKAI	GWGCWC	2 cut(s)	354, 566
BsiHKCI	CYCGRG	1 cut(s)	565
BslI	CCNNNNNNNGG	6 cut(s)	60, 286, 342, 466, 493, 507
BsmAI	GTCTC	2 cut(s)	373, 619
BsmBI	CGTCTC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	511
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	354, 566
Bsp143I	GATC	4 cut(s)	382, 390, 447, 520
BspACI	CCGC	7 cut(s)	20, 23, 25, 122, 550, 556, 570
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	1 cut(s)	621
BspFNI	CGCG	3 cut(s)	25, 122, 550
BspPI	GGATC	1 cut(s)	390
BsrBI	CCGCTC	1 cut(s)	570
BssECI	CCNNGG	4 cut(s)	23, 378, 460, 613
BssMI	GATC	4 cut(s)	382, 390, 447, 520
BssNI	GRCGYC	1 cut(s)	539
BssT1I	CCWWGG	2 cut(s)	378, 460
BstACI	GRCGYC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	100, 537
BstDEI	CTNAG	2 cut(s)	316, 629
BstDSI	CCRYGG	2 cut(s)	23, 613
BstF5I	GGATG	1 cut(s)	471
BstFNI	CGCG	3 cut(s)	25, 122, 550
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	4 cut(s)	385, 393, 450, 523
BstMAI	GTCTC	2 cut(s)	373, 619
BstMBI	GATC	4 cut(s)	382, 390, 447, 520
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 22, 28, 128, 532, 570
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSFI	CTRYAG	1 cut(s)	115
BstUI	CGCG	3 cut(s)	25, 122, 550
BstV1I	GCAGC	3 cut(s)	3, 183, 528
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	382, 447
BstYI	RGATCY	2 cut(s)	382, 447
BsuRI	GGCC	1 cut(s)	511
BtgI	CCRYGG	2 cut(s)	23, 613
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	100, 537
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	345, 484
Cfr42I	CCGCGG	1 cut(s)	26
CseI	GACGC	1 cut(s)	528
CviAII	CATG	2 cut(s)	281, 595
CviJI	RGCY	8 cut(s)	92, 114, 255, 352, 413, 511, 535, 573
CviKI_1	RGCY	8 cut(s)	92, 114, 255, 352, 413, 511, 535, 573
DdeI	CTNAG	2 cut(s)	316, 629
DpnI	GATC	4 cut(s)	384, 392, 449, 522
DpnII	GATC	4 cut(s)	382, 390, 447, 520
DraIII	CACNNNGTG	1 cut(s)	283
DrdI	GACNNNNNNGTC	1 cut(s)	482
DseDI	GACNNNNNNGTC	1 cut(s)	482
EciI	GGCGGA	1 cut(s)	571
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	378, 460
Eco147I	AGGCCT	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	345, 484
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	484
EcoT14I	CCWWGG	2 cut(s)	378, 460
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	378, 460
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	2 cut(s)	284, 598
FaiI	YATR	9 cut(s)	80, 215, 272, 282, 313, 474, 596, 640, 642
FatI	CATG	2 cut(s)	280, 594
FauI	CCCGC	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	6 cut(s)	17, 20, 23, 172, 517, 571
FokI	GGATG	1 cut(s)	478
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	6 cut(s)	17, 20, 23, 172, 517, 571
FspBI	CTAG	2 cut(s)	153, 461
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	6 cut(s)	17, 20, 23, 172, 517, 571
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	511
HgaI	GACGC	1 cut(s)	528
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	284, 598
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HinfI	GANTC	2 cut(s)	433, 545
HphI	GGTGA	2 cut(s)	269, 442
Hpy166II	GTNNAC	2 cut(s)	68, 397
Hpy188I	TCNGA	4 cut(s)	50, 373, 447, 544
Hpy188III	TCNNGA	4 cut(s)	250, 388, 394, 425
Hpy8I	GTNNAC	2 cut(s)	68, 397
HpyAV	CCTTC	6 cut(s)	55, 156, 178, 475, 501, 501
HpyCH4V	TGCA	4 cut(s)	4, 171, 217, 286
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 22, 28, 128, 532, 570
HpyF3I	CTNAG	2 cut(s)	316, 629
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	284, 598
HspAI	GCGC	1 cut(s)	120
KspI	CCGCGG	1 cut(s)	26
Kzo9I	GATC	4 cut(s)	382, 390, 447, 520
LmnI	GCTCC	3 cut(s)	28, 111, 357
LpnPI	CCDG	7 cut(s)	78, 120, 166, 272, 401, 489, 521
Lsp1109I	GCAGC	3 cut(s)	3, 183, 528
MaeI	CTAG	2 cut(s)	153, 461
MalI	GATC	4 cut(s)	384, 392, 449, 522
MbiI	CCGCTC	1 cut(s)	570
MboI	GATC	4 cut(s)	382, 390, 447, 520
MboII	GAAGA	5 cut(s)	118, 189, 192, 352, 442
MflI	RGATCY	2 cut(s)	382, 447
MhlI	GDGCHC	2 cut(s)	354, 566
MluCI	AATT	5 cut(s)	55, 74, 205, 290, 338
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	22, 410, 421, 449, 497, 522, 624
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	2 cut(s)	189, 341
MspA1I	CMGCKG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	193
MvnI	CGCG	3 cut(s)	25, 122, 550
MwoI	GCNNNNNNNGC	6 cut(s)	16, 22, 28, 128, 532, 570
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	4 cut(s)	382, 390, 447, 520
NlaIII	CATG	2 cut(s)	284, 598
PaeR7I	CTCGAG	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	511
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	18, 21, 24, 173, 518, 572
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PpuMI	RGGWCCY	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	484
PspPI	GGNCC	2 cut(s)	345, 484
PspPPI	RGGWCCY	1 cut(s)	484
PspXI	VCTCGAGB	1 cut(s)	565
PsuI	RGATCY	2 cut(s)	382, 447
SacI	GAGCTC	1 cut(s)	354
SacII	CCGCGG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	189, 341
SatI	GCNGC	6 cut(s)	17, 20, 23, 172, 517, 571
Sau3AI	GATC	4 cut(s)	382, 390, 447, 520
Sau96I	GGNCC	2 cut(s)	345, 484
SchI	GAGTC	1 cut(s)	554
SduI	GDGCHC	2 cut(s)	354, 566
SfcI	CTRYAG	1 cut(s)	115
Sfr274I	CTCGAG	1 cut(s)	565
Sfr303I	CCGCGG	1 cut(s)	26
SgrBI	CCGCGG	1 cut(s)	26
SinI	GGWCC	2 cut(s)	345, 484
SlaI	CTCGAG	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	5 cut(s)	55, 74, 205, 290, 338
SseBI	AGGCCT	1 cut(s)	511
SsiI	CCGC	7 cut(s)	20, 23, 25, 122, 550, 556, 570
SspMI	CTAG	2 cut(s)	153, 461
SstI	GAGCTC	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	511
StyI	CCWWGG	2 cut(s)	378, 460
TaqI	TCGA	1 cut(s)	566
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	5 cut(s)	55, 74, 205, 290, 338
TauI	GCSGC	3 cut(s)	22, 25, 573
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	2 cut(s)	189, 341
Tru9I	TTAA	2 cut(s)	189, 341
TscAI	CASTG	1 cut(s)	592
TseI	GCWGC	3 cut(s)	16, 171, 516
TspDTI	ATGAA	2 cut(s)	67, 583
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	345, 484
XhoI	CTCGAG	1 cut(s)	565
XmaJI	CCTAGG	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	2 cut(s)	153, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.