Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Forward (+)

13343101 .. 13343949

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43306

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTATATGGTTATCTTACATCAGTTCCTCGTGTTCATAGGGGTAGCCCTCTCCATCACCGCCTTCCCTGTCCTCGCACGCATCTTAGCAGAGCTCAAACTGCTCACCACACGCATAGGCGAGACGGCAATGGCTGCAGCAGCCTTCAACGACGTGGCTGCATGGATTCTGCTGGCCTTGGCCGTGGCCTTAGCAGGTGGGAACCTTAAAGGCCCTCTAGTCTCCATTTGGGTTCTCATTTCCGGCGTGGCTTTTGTTGCTTTTATGTTCATTCTGGTCCGTCCTTTGATGACTTGGGTTGCTAACCGCTGCTCATCTCAAATGGAGGACGAAGCTTATCTATGCTTCACCCTAGCCGGGGTCATGTTGTCCGGGTTCATGACTGACCTAATCGGTGTCCATGCCATCTTTGGGGCATTTATTTTTGGATTAACCATTCCGAAAGGGGGTGAATTTGCAGCCAAACTGACTAAAAGGATCGAGGATTTTGTGTCTGGTTTGCTTCTCCCTCTCTACTTTGCCTCGAGTGGTTTGAAGACTGACGTTACTAAAATACGTGGGATCAAGGCATGGGGTCTTTTGGCTTTGGTTATATCAGTTTCTTGCACTGGAAAAATTTTGGGAACGTTTTTGGTTGCAATGATGAGTATGATACCAGTGAGGGAGTCATTAGCTCTAGGTGTACTGATGAATACTAAAGGATTGGTGGAGCTTGTTGTTCTGAATATTGGCAAGGAGAAAAAGGTAATTTTCAGATCAATTATACCACTTAATGCTATATTTTTTGGAAACCTATTTGGGACCCAAATAAAATTCTTTGCACAAAAATGGAAGTTTTTTTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

282

Amino Acids

30.71

Weight (kDa)

9.71

Isoelectric Point (pI)

23.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	11 - 259	1.5e-38	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	185
AciI	CCGC	2 cut(s)	60, 307
AclI	AACGTT	1 cut(s)	626
AclWI	GGATC	2 cut(s)	485, 569
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	3 cut(s)	452, 615, 812
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	4 cut(s)	357, 358, 411, 446
AgsI	TTSAA	2 cut(s)	148, 535
AjiI	CACGTC	1 cut(s)	154
AluBI	AGCT	4 cut(s)	94, 335, 674, 712
AluI	AGCT	4 cut(s)	94, 335, 674, 712
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	116, 226
AlwI	GGATC	2 cut(s)	485, 569
Ama87I	CYCGRG	1 cut(s)	523
AoxI	GGCC	4 cut(s)	174, 180, 186, 211
ApeKI	GCWGC	6 cut(s)	134, 137, 140, 158, 309, 458
ApoI	RAATTY	3 cut(s)	452, 615, 812
AspS9I	GGNCC	3 cut(s)	212, 277, 801
AsuC2I	CCSGG	2 cut(s)	358, 373
AsuHPI	GGTGA	4 cut(s)	49, 97, 340, 461
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	277, 801
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	6 cut(s)	121, 145, 149, 152, 296, 470
BccI	CCATC	2 cut(s)	62, 413
BceAI	ACGGC	2 cut(s)	141, 167
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BcnI	CCSGG	2 cut(s)	358, 373
BcoDI	GTCTC	2 cut(s)	116, 226
BfaI	CTAG	3 cut(s)	218, 353, 677
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	6 cut(s)	135, 138, 141, 159, 310, 459
BlsI	GCNGC	6 cut(s)	136, 139, 142, 160, 311, 460
Bme1390I	CCNGG	2 cut(s)	358, 373
Bme18I	GGWCC	2 cut(s)	277, 801
BmeT110I	CYCGRG	1 cut(s)	523
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	212, 277, 801
BmiI	GGNNCC	3 cut(s)	203, 802, 803
BmrFI	CCNGG	2 cut(s)	358, 373
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	358, 373
BsaAI	YACGTR	1 cut(s)	557
BsaJI	CCNNGG	3 cut(s)	177, 183, 357
Bsc4I	CCNNNNNNNGG	4 cut(s)	357, 358, 411, 446
Bse1I	ACTGG	2 cut(s)	613, 656
Bse3DI	GCAATG	2 cut(s)	135, 645
BseDI	CCNNGG	3 cut(s)	177, 183, 357
BseLI	CCNNNNNNNGG	4 cut(s)	357, 358, 411, 446
BseMI	GCAATG	2 cut(s)	135, 645
BseNI	ACTGG	2 cut(s)	613, 656
BseXI	GCAGC	6 cut(s)	121, 145, 149, 152, 296, 470
BshFI	GGCC	4 cut(s)	176, 182, 188, 213
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	523
BsiSI	CCGG	3 cut(s)	243, 357, 372
BslFI	GGGAC	1 cut(s)	814
BslI	CCNNNNNNNGG	4 cut(s)	357, 358, 411, 446
BsmAI	GTCTC	2 cut(s)	116, 226
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	814
BsnI	GGCC	4 cut(s)	176, 182, 188, 213
BsoBI	CYCGRG	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	477, 561, 755
BspACI	CCGC	2 cut(s)	60, 307
BspANI	GGCC	4 cut(s)	176, 182, 188, 213
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	203, 802, 803
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	2 cut(s)	485, 569
BsrDI	GCAATG	2 cut(s)	135, 645
BsrI	ACTGG	2 cut(s)	613, 656
BssECI	CCNNGG	3 cut(s)	177, 183, 357
BssMI	GATC	3 cut(s)	477, 561, 755
BssSI	CACGAG	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	79, 174
BstDEI	CTNAG	2 cut(s)	85, 190
BstDSI	CCRYGG	1 cut(s)	183
BstKTI	GATC	3 cut(s)	480, 564, 758
BstMAI	GTCTC	2 cut(s)	116, 226
BstMBI	GATC	3 cut(s)	477, 561, 755
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 134, 140, 257
BstSCI	CCNGG	2 cut(s)	356, 371
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	6 cut(s)	121, 145, 149, 152, 296, 470
BstV2I	GAAGAC	1 cut(s)	542
BsuRI	GGCC	4 cut(s)	176, 182, 188, 213
BtgI	CCRYGG	1 cut(s)	183
BtrI	CACGTC	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	606, 663
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	2 cut(s)	79, 174
CciI	TCATGA	1 cut(s)	378
Cfr13I	GGNCC	3 cut(s)	212, 277, 801
Csp6I	GTAC	1 cut(s)	683
CviAII	CATG	5 cut(s)	162, 364, 379, 401, 570
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	2 cut(s)	85, 190
DpnI	GATC	3 cut(s)	479, 563, 757
DpnII	GATC	3 cut(s)	477, 561, 755
EaeI	YGGCCR	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	277, 801
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	212, 801
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	5 cut(s)	165, 367, 382, 404, 573
FaqI	GGGAC	1 cut(s)	814
FatI	CATG	5 cut(s)	161, 363, 378, 400, 569
Fnu4HI	GCNGC	6 cut(s)	135, 138, 141, 159, 310, 459
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	6 cut(s)	135, 138, 141, 159, 310, 459
FspBI	CTAG	3 cut(s)	218, 353, 677
GluI	GCNGC	6 cut(s)	135, 138, 141, 159, 310, 459
HaeIII	GGCC	4 cut(s)	176, 182, 188, 213
HapII	CCGG	3 cut(s)	243, 357, 372
Hin1II	CATG	5 cut(s)	165, 367, 382, 404, 573
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	2 cut(s)	166, 665
HpaII	CCGG	3 cut(s)	243, 357, 372
HphI	GGTGA	4 cut(s)	49, 97, 340, 461
Hpy166II	GTNNAC	1 cut(s)	683
Hpy188I	TCNGA	3 cut(s)	441, 723, 755
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	1 cut(s)	683
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	73, 154
HpyCH4IV	ACGT	4 cut(s)	153, 543, 556, 626
HpyCH4V	TGCA	6 cut(s)	137, 161, 458, 606, 638, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 134, 140, 257
HpyF3I	CTNAG	2 cut(s)	85, 190
HpySE526I	ACGT	4 cut(s)	153, 543, 556, 626
Hsp92II	CATG	5 cut(s)	165, 367, 382, 404, 573
KflI	GGGWCCC	1 cut(s)	801
Kzo9I	GATC	3 cut(s)	477, 561, 755
LmnI	GCTCC	1 cut(s)	709
Lsp1109I	GCAGC	6 cut(s)	121, 145, 149, 152, 296, 470
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	3 cut(s)	218, 353, 677
MaeII	ACGT	4 cut(s)	153, 543, 556, 626
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	3 cut(s)	479, 563, 757
MboI	GATC	3 cut(s)	477, 561, 755
MboII	GAAGA	1 cut(s)	547
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	5 cut(s)	452, 615, 747, 759, 812
MlyI	GAGTC	1 cut(s)	674
MnlI	CCTC	9 cut(s)	38, 59, 83, 225, 319, 475, 519, 532, 654
MseI	TTAA	4 cut(s)	207, 431, 771, 847
MslI	CAYNNNNRTG	1 cut(s)	826
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	3 cut(s)	243, 357, 372
MspR9I	CCNGG	2 cut(s)	358, 373
MwoI	GCNNNNNNNGC	4 cut(s)	100, 134, 140, 257
NciI	CCSGG	2 cut(s)	358, 373
NdeII	GATC	3 cut(s)	477, 561, 755
NlaIII	CATG	5 cut(s)	165, 367, 382, 404, 573
NlaIV	GGNNCC	3 cut(s)	203, 802, 803
PaeR7I	CTCGAG	1 cut(s)	523
PagI	TCATGA	1 cut(s)	378
PaqCI	CACCTGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	6 cut(s)	136, 139, 142, 160, 311, 460
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
Ppu21I	YACGTR	1 cut(s)	557
PpuMI	RGGWCCY	1 cut(s)	801
Psp124BI	GAGCTC	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	801
PspN4I	GGNNCC	3 cut(s)	203, 802, 803
PspPI	GGNCC	3 cut(s)	212, 277, 801
PspPPI	RGGWCCY	1 cut(s)	801
PspXI	VCTCGAGB	1 cut(s)	523
PstI	CTGCAG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
RseI	CAYNNNNRTG	1 cut(s)	826
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	4 cut(s)	207, 431, 771, 847
SatI	GCNGC	6 cut(s)	135, 138, 141, 159, 310, 459
Sau3AI	GATC	3 cut(s)	477, 561, 755
Sau96I	GGNCC	3 cut(s)	212, 277, 801
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	2 cut(s)	358, 373
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	135
Sfr274I	CTCGAG	1 cut(s)	523
SinI	GGWCC	2 cut(s)	277, 801
SlaI	CTCGAG	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	826
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	5 cut(s)	452, 615, 747, 759, 812
SsiI	CCGC	2 cut(s)	60, 307
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	3 cut(s)	218, 353, 677
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	356, 371
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	4 cut(s)	156, 546, 559, 629
TaqI	TCGA	2 cut(s)	480, 524
TasI	AATT	5 cut(s)	452, 615, 747, 759, 812
TatI	WGTACW	1 cut(s)	682
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	4 cut(s)	207, 431, 771, 847
Tru9I	TTAA	4 cut(s)	207, 431, 771, 847
TscAI	CASTG	2 cut(s)	613, 663
TseI	GCWGC	6 cut(s)	134, 137, 140, 158, 309, 458
TspDTI	ATGAA	4 cut(s)	25, 259, 367, 704
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	2 cut(s)	613, 663
VpaK11BI	GGWCC	2 cut(s)	277, 801
XapI	RAATTY	3 cut(s)	452, 615, 812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	523
XspI	CTAG	3 cut(s)	218, 353, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.