Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Forward (+)

13350921 .. 13352159

Gene Structure 1239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43307

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAAGCTCTCGTCGAACTTGCTTAATTTACAGATTCTAAACGACGAGATGTTTGCTATTTTTGTGCTGATGGCACTTTTCACCACCTTCATGACGACACCAATAGTGATGGCCATTTACAAACCCTATGTCGTTGCTTCCCAATCTGAGAGTAGTTTAGAGAGACAGAATTCTCCCAGCAAGAACCCGAAGAAAAAGAAGGAACTTCTAATCCTTGCTTGTATTCATGGACCGGGAAGTGTACCCTCCCTTATCAACCTCATTGAGTCGACCGGAACCTCCTCCGAGAATTCTCTTCTCAAAGTTTACGTGATGCATCTTGTTGAACTTACTGATCGTTCATCCTCCATTATGATGGTACACAAAGTTCGGAAAAACGGCTTGCCCTTCATCAACCGCTTTTGTCTAGGGGTGGCACGCCATATCGCCTCAGCATTTGAAGCTTATAGTCAAGTTGGTCAAGTCACCATCCTTCACACAACAGCCATCTCGGCTTTGCCTACGATGTACGAGGATATTCTCCATGTTGCGGAAGCCAAGACGGTGTCCATCATTATCTTGCCTTTCAACAAACAGGGGAATAAACAGGGTGAAGAGACGATGGATAATTTAGAGCATCGCTGGAGAGCAGTCAATGAGAGAGTTCTAAAATGTGCTAATTGCTCAGTAGCATTGTTCGTGGATCGTGGACTCGGTGTTGGAGCTGGGAAGGGTGCAAAGACTACCAATCTGAAGAGGGTGTGCATTCTATTCTTGGGTGGAACCGATGACCGCAGGGCACTGCAGTATGTTGCGGGAATTGCAAATCAGAGCGTTGTAGTTACCGTTGTGAGGTGTTTTGAGCACAGCATTACTCCTCCAAGCTCCATCACCAACCCCGACAGGGATCTTGATGAGACTGCAGTGGCAGAGTTTCGAAGGCAGAATGGGTCGGTGGAATTCATAGAGAAGGTGGTAGTCGGCAACATTATAGAAACGGTGGCGGGCATAGTTCAGGGCAGGGAATACAACCTGGTGATCGTGGGGAAGCAGCACCACCCTTCAACAATTGTTGCAGAATTGGCTCACAATCAGCTGGAGCATACCGAACTGGGACCAATTGGAGACGCATTAGCTTCATCCTCACATGGGATTTCGTGCTCCGTGCTTGTGATACAAACACCACAGATTAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

392

Amino Acids

42.86

Weight (kDa)

8.12

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_2nd	PF23256	100 - 240	4.3e-31	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	247 - 387	7.3e-11	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	5 cut(s)	397, 530, 772, 794, 983
AclWI	GGATC	2 cut(s)	690, 894
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	3 cut(s)	169, 289, 938
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	3 cut(s)	243, 360, 509
AfiI	CCNNNNNNNGG	4 cut(s)	529, 831, 883, 1128
AgsI	TTSAA	4 cut(s)	326, 440, 568, 1044
AjnI	CCWGG	1 cut(s)	1011
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	6 cut(s)	7, 443, 704, 864, 1075, 1115
AluI	AGCT	6 cut(s)	7, 443, 704, 864, 1075, 1115
Alw21I	GWGCWC	2 cut(s)	846, 1142
Alw26I	GTCTC	4 cut(s)	157, 590, 890, 1098
AlwI	GGATC	2 cut(s)	690, 894
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	1030
ApoI	RAATTY	3 cut(s)	169, 289, 938
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 114, 146
AspS9I	GGNCC	2 cut(s)	230, 1094
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	5 cut(s)	73, 457, 602, 862, 1027
AsuII	TTCGAA	1 cut(s)	916
AvaII	GGWCC	2 cut(s)	230, 1094
BaeGI	GKGCMC	1 cut(s)	781
BalI	TGGCCA	1 cut(s)	113
Bbv12I	GWGCWC	2 cut(s)	846, 1142
BbvCI	CCTCAGC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	1042
BccI	CCATC	8 cut(s)	64, 103, 349, 476, 494, 557, 595, 875
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	1013
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	4 cut(s)	157, 590, 890, 1098
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	2 cut(s)	782, 900
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	1 cut(s)	1031
BlsI	GCNGC	1 cut(s)	1032
Bme1390I	CCNGG	2 cut(s)	234, 1013
Bme18I	GGWCC	2 cut(s)	230, 1094
BmgT120I	GGNCC	2 cut(s)	230, 1094
BmiI	GGNNCC	3 cut(s)	277, 763, 1095
BmrFI	CCNGG	2 cut(s)	234, 1013
BmrI	ACTGGG	1 cut(s)	1100
BmsI	GCATC	3 cut(s)	303, 325, 625
BmuI	ACTGGG	1 cut(s)	1100
BpmI	CTGGAG	2 cut(s)	643, 1097
Bpu10I	CCTNAGC	1 cut(s)	430
Bpu14I	TTCGAA	1 cut(s)	916
BpuMI	CCSGG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	4 cut(s)	529, 831, 883, 1128
Bse1I	ACTGG	1 cut(s)	1095
BseBI	CCWGG	1 cut(s)	1013
BseGI	GGATG	3 cut(s)	341, 468, 1118
BseLI	CCNNNNNNNGG	4 cut(s)	529, 831, 883, 1128
BseMII	CTCAG	3 cut(s)	138, 444, 678
BseNI	ACTGG	1 cut(s)	1095
BseRI	GAGGAG	2 cut(s)	271, 846
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	1 cut(s)	1042
BseYI	CCCAGC	2 cut(s)	176, 704
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	846, 1142
BsiSI	CCGG	2 cut(s)	233, 273
BslFI	GGGAC	1 cut(s)	1107
BslI	CCNNNNNNNGG	4 cut(s)	529, 831, 883, 1128
BsmAI	GTCTC	4 cut(s)	157, 590, 890, 1098
BsmBI	CGTCTC	2 cut(s)	590, 1098
BsmFI	GGGAC	1 cut(s)	1107
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	916
Bsp1286I	GDGCHC	3 cut(s)	781, 846, 1142
Bsp143I	GATC	4 cut(s)	334, 682, 886, 1017
BspACI	CCGC	5 cut(s)	397, 530, 772, 794, 983
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	3 cut(s)	139, 443, 677
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	277, 763, 1095
BspMAI	CTGCAG	2 cut(s)	786, 904
BspPI	GGATC	2 cut(s)	690, 894
BspT104I	TTCGAA	1 cut(s)	916
BsrI	ACTGG	1 cut(s)	1095
BssMI	GATC	4 cut(s)	334, 682, 886, 1017
Bst2UI	CCWGG	1 cut(s)	1013
Bst4CI	ACNGT	3 cut(s)	544, 826, 979
Bst6I	CTCTTC	3 cut(s)	300, 588, 728
BstBAI	YACGTR	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	916
BstC8I	GCNNGC	3 cut(s)	383, 418, 985
BstDEI	CTNAG	3 cut(s)	147, 430, 664
BstF5I	GGATG	3 cut(s)	341, 468, 1118
BstKTI	GATC	4 cut(s)	337, 685, 889, 1020
BstMAI	GTCTC	4 cut(s)	157, 590, 890, 1098
BstMBI	GATC	4 cut(s)	334, 682, 886, 1017
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	4 cut(s)	440, 491, 800, 1061
BstNI	CCWGG	1 cut(s)	1013
BstSCI	CCNGG	2 cut(s)	232, 1011
BstSFI	CTRYAG	2 cut(s)	782, 900
BstSLI	GKGCMC	1 cut(s)	781
BstV1I	GCAGC	1 cut(s)	1042
BstX2I	RGATCY	1 cut(s)	886
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	886
BsuRI	GGCC	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	602
BtsCI	GGATG	3 cut(s)	341, 468, 1118
BtsI	GCAGTG	2 cut(s)	779, 909
BtsIMutI	CAGTG	2 cut(s)	779, 909
Cac8I	GCNNGC	3 cut(s)	383, 418, 985
CciI	TCATGA	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	230, 1094
CseI	GACGC	1 cut(s)	1115
CsiI	ACCWGGT	1 cut(s)	1011
Csp6I	GTAC	3 cut(s)	242, 359, 508
CviAII	CATG	4 cut(s)	91, 227, 524, 1127
CviQI	GTAC	3 cut(s)	242, 359, 508
DdeI	CTNAG	3 cut(s)	147, 430, 664
DpnI	GATC	4 cut(s)	336, 684, 888, 1019
DpnII	GATC	4 cut(s)	334, 682, 886, 1017
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	3 cut(s)	300, 588, 728
EarI	CTCTTC	3 cut(s)	300, 588, 728
Eco47I	GGWCC	2 cut(s)	230, 1094
Eco57I	CTGAAG	1 cut(s)	752
EcoRI	GAATTC	3 cut(s)	169, 289, 938
EcoRII	CCWGG	1 cut(s)	1011
EcoT22I	ATGCAT	1 cut(s)	318
Esp3I	CGTCTC	2 cut(s)	590, 1098
FaeI	CATG	4 cut(s)	94, 230, 527, 1130
FaqI	GGGAC	1 cut(s)	1107
FatI	CATG	4 cut(s)	90, 226, 523, 1126
FauI	CCCGC	2 cut(s)	787, 976
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	1031
FokI	GGATG	3 cut(s)	328, 455, 1105
Fsp4HI	GCNGC	1 cut(s)	1031
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	1 cut(s)	1031
GsaI	CCCAGC	2 cut(s)	180, 708
GsuI	CTGGAG	2 cut(s)	643, 1097
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	233, 273
HgaI	GACGC	1 cut(s)	1115
Hin1II	CATG	4 cut(s)	94, 230, 527, 1130
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	3 cut(s)	34, 266, 690
HpaII	CCGG	2 cut(s)	233, 273
HphI	GGTGA	5 cut(s)	73, 457, 602, 862, 1027
Hpy166II	GTNNAC	5 cut(s)	242, 270, 307, 361, 689
Hpy188I	TCNGA	5 cut(s)	148, 286, 372, 732, 810
Hpy188III	TCNNGA	2 cut(s)	91, 890
Hpy8I	GTNNAC	5 cut(s)	242, 270, 307, 361, 689
Hpy99I	CGWCG	2 cut(s)	16, 47
HpyAV	CCTTC	8 cut(s)	97, 193, 397, 482, 703, 912, 943, 1050
HpyCH4III	ACNGT	3 cut(s)	544, 826, 979
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	7 cut(s)	316, 716, 744, 784, 803, 902, 1055
HpyF10VI	GCNNNNNNNGC	4 cut(s)	440, 491, 800, 1061
HpyF3I	CTNAG	3 cut(s)	147, 430, 664
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	94, 230, 527, 1130
Kzo9I	GATC	4 cut(s)	334, 682, 886, 1017
LmnI	GCTCC	4 cut(s)	701, 869, 1078, 1145
Lsp1109I	GCAGC	1 cut(s)	1042
LweI	GCATC	3 cut(s)	303, 325, 625
MabI	ACCWGGT	1 cut(s)	1011
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	463, 820
MalI	GATC	4 cut(s)	336, 684, 888, 1019
MboI	GATC	4 cut(s)	334, 682, 886, 1017
MboII	GAAGA	4 cut(s)	202, 287, 605, 745
MfeI	CAATTG	2 cut(s)	1047, 1098
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	3 cut(s)	781, 846, 1142
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	275, 684
MmeI	TCCRAC	1 cut(s)	679
Mox20I	TGGCCA	1 cut(s)	113
Mph1103I	ATGCAT	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	2 cut(s)	89, 353
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	1075
MspI	CCGG	2 cut(s)	233, 273
MspR9I	CCNGG	2 cut(s)	234, 1013
MunI	CAATTG	2 cut(s)	1047, 1098
Mva1269I	GAATGC	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	1013
MwoI	GCNNNNNNNGC	4 cut(s)	440, 491, 800, 1061
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	4 cut(s)	334, 682, 886, 1017
NlaIII	CATG	4 cut(s)	94, 230, 527, 1130
NlaIV	GGNNCC	3 cut(s)	277, 763, 1095
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	318
NspV	TTCGAA	1 cut(s)	916
PagI	TCATGA	1 cut(s)	90
PctI	GAATGC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	544
PkrI	GCNGC	1 cut(s)	1032
PleI	GAGTC	2 cut(s)	274, 684
PpsI	GAGTC	2 cut(s)	274, 684
Ppu21I	YACGTR	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	1011
PspFI	CCCAGC	2 cut(s)	176, 704
PspGI	CCWGG	1 cut(s)	1011
PspN4I	GGNNCC	3 cut(s)	277, 763, 1095
PspPI	GGNCC	2 cut(s)	230, 1094
PsrI	GAACNNNNNNTAC	2 cut(s)	351, 383
PstI	CTGCAG	2 cut(s)	786, 904
PsuI	RGATCY	1 cut(s)	886
PsyI	GACNNNGTC	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	1075
RsaI	GTAC	3 cut(s)	243, 360, 509
RsaNI	GTAC	3 cut(s)	242, 359, 508
RseI	CAYNNNNRTG	2 cut(s)	89, 353
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	1031
Sau3AI	GATC	4 cut(s)	334, 682, 886, 1017
Sau96I	GGNCC	2 cut(s)	230, 1094
SchI	GAGTC	2 cut(s)	275, 684
ScrFI	CCNGG	2 cut(s)	234, 1013
SduI	GDGCHC	3 cut(s)	781, 846, 1142
SexAI	ACCWGGT	1 cut(s)	1011
SfaNI	GCATC	3 cut(s)	303, 325, 625
SfcI	CTRYAG	2 cut(s)	782, 900
SfuI	TTCGAA	1 cut(s)	916
SinI	GGWCC	2 cut(s)	230, 1094
SmiMI	CAYNNNNRTG	2 cut(s)	89, 353
SsiI	CCGC	5 cut(s)	397, 530, 772, 794, 983
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	232, 1011
TaaI	ACNGT	3 cut(s)	544, 826, 979
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	14, 269, 916
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	786, 909
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	1 cut(s)	1030
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	7 cut(s)	17, 79, 215, 330, 379, 931, 1107
TspGWI	ACGGA	1 cut(s)	1132
TspRI	CASTG	2 cut(s)	786, 909
Tth111I	GACNNNGTC	1 cut(s)	544
VpaK11BI	GGWCC	2 cut(s)	230, 1094
XapI	RAATTY	3 cut(s)	169, 289, 938
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.