Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8287377.1

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Forward (+)

134 .. 863

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8287377.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 730 bp

atgaagctctcgtcgaacttgcttaatttacagattctaaacgacgagatgtttgctatttttgtgctgatggcacttttcaccaccttcatgacgacaccaatagtgatggccatttacaaaccctatgtcgttgcttcccaatctgagagtagtttagagagacagaattctcccagcaagaacccgaagaaaaagaaggaacttcgaatccttgcttgtattcatggaccgggaagtgtaccctcccttatcaacctcattgagtcgaccggaacctcctccgagaattctcttctcaaagtttacgtgatgcatcttgttgaacttactgatcgttcatcctccattatgatggtacacaaagttcggaaaaacggcttgcccttcatcaaccgcttttgtctaggggtggcacgccatatcgcctcagcatttgaagcttatagtcaagttggtcaagtcaccatccgtcacacaacagccatctcggctttgcctacgatgcacgaggatattctccatgttgcggaagccaagacggtgtccatcattatcttgcctttcaacaaacaggggaataaacagggtgaagagacgatggataatttagagcatcgctggagagcagtcaatgagagagttctaaaatgtgctaattgctcagtagcattgttcgtggatcgtggactcggtgttggagctgggaagggtgcaaagactaccaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

243

Amino Acids

26.83

Weight (kDa)

9.41

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	2 cut(s)	397, 530
AclWI	GGATC	1 cut(s)	690
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	169, 289
AfaI	GTAC	2 cut(s)	243, 360
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	326, 440, 568
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	3 cut(s)	7, 443, 704
AluI	AGCT	3 cut(s)	7, 443, 704
Alw26I	GTCTC	2 cut(s)	157, 590
AlwI	GGATC	1 cut(s)	690
AoxI	GGCC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	169, 289
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 114, 146
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	73, 457, 602
AsuII	TTCGAA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	113
BauI	CACGAG	1 cut(s)	509
BbvCI	CCTCAGC	1 cut(s)	430
BccI	CCATC	7 cut(s)	64, 103, 349, 476, 494, 557, 595
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	157, 590
BfaI	CTAG	1 cut(s)	407
BglI	GCCNNNNNGGC	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	4 cut(s)	303, 325, 495, 625
BpmI	CTGGAG	1 cut(s)	643
Bpu10I	CCTNAGC	1 cut(s)	430
Bpu14I	TTCGAA	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
BseGI	GGATG	2 cut(s)	341, 468
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	3 cut(s)	138, 444, 678
BseRI	GAGGAG	1 cut(s)	271
BseYI	CCCAGC	2 cut(s)	176, 704
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	233, 273
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	2 cut(s)	157, 590
BsmBI	CGTCTC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	334, 682
BspACI	CCGC	2 cut(s)	397, 530
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	3 cut(s)	139, 443, 677
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	690
BspT104I	TTCGAA	1 cut(s)	208
BssMI	GATC	2 cut(s)	334, 682
BssSI	CACGAG	1 cut(s)	509
Bst2BI	CACGAG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	2 cut(s)	300, 588
BstBAI	YACGTR	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	383, 418
BstDEI	CTNAG	3 cut(s)	147, 430, 664
BstF5I	GGATG	2 cut(s)	341, 468
BstKTI	GATC	2 cut(s)	337, 685
BstMAI	GTCTC	2 cut(s)	157, 590
BstMBI	GATC	2 cut(s)	334, 682
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 491, 505
BstSCI	CCNGG	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	602
BtsCI	GGATG	2 cut(s)	341, 468
Cac8I	GCNNGC	2 cut(s)	383, 418
CciI	TCATGA	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	242, 359
CviAII	CATG	3 cut(s)	91, 227, 524
CviJI	RGCY	8 cut(s)	7, 113, 381, 443, 485, 494, 536, 704
CviKI_1	RGCY	8 cut(s)	7, 113, 381, 443, 485, 494, 536, 704
CviQI	GTAC	2 cut(s)	242, 359
DdeI	CTNAG	3 cut(s)	147, 430, 664
DpnI	GATC	2 cut(s)	336, 684
DpnII	GATC	2 cut(s)	334, 682
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	300, 588
EarI	CTCTTC	2 cut(s)	300, 588
Eco47I	GGWCC	1 cut(s)	230
EcoRI	GAATTC	2 cut(s)	169, 289
EcoT22I	ATGCAT	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	3 cut(s)	94, 230, 527
FaiI	YATR	7 cut(s)	92, 129, 228, 353, 423, 447, 525
FatI	CATG	3 cut(s)	90, 226, 523
FblI	GTMKAC	1 cut(s)	269
FokI	GGATG	2 cut(s)	328, 455
FspBI	CTAG	1 cut(s)	407
GsaI	CCCAGC	2 cut(s)	180, 708
GsuI	CTGGAG	1 cut(s)	643
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	233, 273
Hin1II	CATG	3 cut(s)	94, 230, 527
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	34, 210, 266, 690
HpaII	CCGG	2 cut(s)	233, 273
HphI	GGTGA	3 cut(s)	73, 457, 602
Hpy166II	GTNNAC	5 cut(s)	242, 270, 307, 361, 689
Hpy188I	TCNGA	3 cut(s)	148, 286, 372
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	5 cut(s)	242, 270, 307, 361, 689
Hpy99I	CGWCG	2 cut(s)	16, 47
HpyAV	CCTTC	4 cut(s)	97, 193, 397, 703
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	3 cut(s)	316, 508, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 491, 505
HpyF3I	CTNAG	3 cut(s)	147, 430, 664
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	94, 230, 527
Kzo9I	GATC	2 cut(s)	334, 682
LmnI	GCTCC	1 cut(s)	701
LpnPI	CCDG	7 cut(s)	190, 246, 286, 560, 572, 607, 690
LweI	GCATC	4 cut(s)	303, 325, 495, 625
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	463, 473
MalI	GATC	2 cut(s)	336, 684
MboI	GATC	2 cut(s)	334, 682
MboII	GAAGA	3 cut(s)	202, 287, 605
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	5 cut(s)	25, 169, 289, 607, 658
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	275, 684
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	7 cut(s)	256, 269, 289, 292, 355, 439, 505
Mox20I	TGGCCA	1 cut(s)	113
Mph1103I	ATGCAT	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	2 cut(s)	89, 353
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	2 cut(s)	233, 273
MspR9I	CCNGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	440, 491, 505
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	334, 682
NlaIII	CATG	3 cut(s)	94, 230, 527
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	2 cut(s)	463, 473
NsiI	ATGCAT	1 cut(s)	318
NspV	TTCGAA	1 cut(s)	208
PagI	TCATGA	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	34, 210
PflFI	GACNNNGTC	1 cut(s)	544
PleI	GAGTC	2 cut(s)	274, 684
PpsI	GAGTC	2 cut(s)	274, 684
Ppu21I	YACGTR	1 cut(s)	310
PspFI	CCCAGC	2 cut(s)	176, 704
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	230
PsrI	GAACNNNNNNTAC	2 cut(s)	351, 383
PsyI	GACNNNGTC	1 cut(s)	544
RsaI	GTAC	2 cut(s)	243, 360
RsaNI	GTAC	2 cut(s)	242, 359
RseI	CAYNNNNRTG	2 cut(s)	89, 353
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	334, 682
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	2 cut(s)	275, 684
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	7 cut(s)	9, 89, 261, 281, 312, 445, 706
SfaNI	GCATC	4 cut(s)	303, 325, 495, 625
SfuI	TTCGAA	1 cut(s)	208
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	89, 353
Sse9I	AATT	5 cut(s)	25, 169, 289, 607, 658
SsiI	CCGC	2 cut(s)	397, 530
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	14, 208, 269
TasI	AATT	5 cut(s)	25, 169, 289, 607, 658
TfiI	GAWTC	2 cut(s)	34, 210
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	2 cut(s)	463, 473
Tsp45I	GTSAC	2 cut(s)	463, 473
TspDTI	ATGAA	5 cut(s)	17, 79, 215, 330, 379
TspGWI	ACGGA	1 cut(s)	461
Tth111I	GACNNNGTC	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	169, 289
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.