Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Reverse (-)

36265631 .. 36271004

Gene Structure 5374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGGTGAATATAACCTCGATCAAAACAGCATCAAATGGCCTGTGGCAAGGCGACAACCCTTTAAACTTCGCCTTCCCACTCCTAATAGTTCAGACCACCTTGATCATCGTCGTCAGCCGCTTCCTTGCTTTCCTACTGAAACCCCTCCACCAACCCAAAGTCATTGCAGAGATTGTCGGTGGAATTCTGCTTGGTCCTTCAGCTTTCGGACGAAACAAAGATTACTTGCACAAAATCTTTCCTTCATGGAGCACTTCAATATTAGAATCAGTGGCAAGTATTGGTCTTCTATTTTACTTGTTCCTTGTAGGCTTAGAGCTCGACCTGAGCTCCACTGGCCGAAGTGGCAGAAAGGGTTTCATCATAGCCCTCGCCGGCATAACGCTCCCGTTCCTCTGCGGCATCGGTGTCGCTGTGGTCTTCCGCAAAACAATTGATGGAGCTGACAAAGCAGGGTTCACTCAGTTCCTTGTCTTCATGGGAGTTTCCCTCTCCATCACCGCCTTCCCTGTGCTTGCCCGCATCTTAGCGGAGCTCAAACTGTTAACAACTCAGATTGGGGAGACTGCCATGGCGGCTGCTGCCTTCAACGACGTTGGTGCATGGATCTTGCTGGCCGTCGCGGTGGCCCTGGCAGGTGACGGTGCTGGTGGCCACAACAAGAGCCCTTTGATATCCATTTGGGTCCTCCTTTCAGGTATTGCCTTTGTGGCCTTCATCATGGTCGTGATCCGACCTGCCATGAAATGGGTCGCCAGCCGGTGCACACAGGAGCAAGATGTCGTGGACGAAGCCTATATTTGCTTAACCTTAACAGGAGTAATGGTGGCCGGGTTCATGACTGACCTAATTGGAATTCATTCCATATTTGGAGCTTTCGTCTTCGGACTCGCAATTCCGAAAGGACAGTTTGCAGATAGATTAATATCGAGGATTGAAGACTTAGTGTCCGGCTTGTTGCTTCCGCTTTACTTTGCATCAAGTGGGTTGAAAACTGATGTGGCTAAAATACGTGGCGGCAGGGCATGGGGGTTGTTGGCTCTGGTTATAACCACGGCTTCGGCTGGGAAGATTCTCGGGACATTTGCGGTGGCAATGATGTTTATGATTCCGGCAAGAGAGTCATTGACGCTTGGTGTGCTCATGAACACTAAAGGCTTGGTGGAGCTCATTGTTCTAAACATTGGCAAGGAGGAGAAGGTGCTAAATGACGAGTCATTTGCAATTCTAGTCCTCATGGCACTCTTCACCACCTTTATCACAAGTCCGGTAGTGATGGCCATTTACAAACCAGCACGTGGAATCCCTATTCGCACTCACCGTAAACTTTGTGATCTCTCCACAGCTGATCAAGCCTCCAAAGACGAGCTCCGAATTCTTGCATGTGTTCATGGTCCAAACAATGCACCCTCGCTCATAAGCTTAATGGATTCAATTCGAAGCAGCAAAAAATCCCAACTCAAACTCTTCCTCATGCACCTTGTTGAACTCACCGAGCGCTCTTCTTCAATCGTTATGGTCCAACGGGCACAAAAAAATGGGTTTCCTTTCTTTAATCGAACGCCTCGATGTGAGTGGTATGATAGGGTTGCTGGGGCATTCCAAGCCTATAGTCAATTGGGCAGAGTCTCGGTCCGGCCCACAACCGCAATTTCGAACCTGTCCAAAATGCACGAGGATATTTGCCACGTGGCGGAAGATAAGAGGGCGTTGATGATCGTCTTGCCATTCCACAAGCAATGGAGATGTGATGGTGATGATCATGAGAAAAGAGAAATCAACATGGGCAATGGTTGGAGAGGGGTCAACCAAAGAGTGCTACAAAATGCGCCGTGCTCGGTTGCAGTGCTTGTGGACCGTGGATTTGGTAAATTCAAAGCCCAAAATCCAGAGCCGGGTAAGGTTGTGGCCCTACGGATTTGTATTGTGTTTTTCGGTGGGCCTGATGATCGAGAGGCATTGGAATTGTGTGGTCGGATGTCGGACCACCCGGCGGTTAAAGTGAAGGTTGTGAGATTCATCGAGAAAGATGGTTCGGAGAGTAATGGGTCTCATGGGCTTATGTTAAAGCCCTCACCCACCAAGTCCACCGAGAACAGTTATTTCTCCACAGCCAAAATGGACCGAGAGAAAGAAAAGGTGGAACTAGATGAGGCAGCAGTGGCTGAGTTCAGGAGCAAGTTGGTGGAGGATGGGACAGCAGAGTACACTGAGCTAGTGGTGGCTAGGAATATTGTGGAGGGGTGTTGGCAATTGGACGTAGTGGAGATCAGGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

759

Amino Acids

82.83

Weight (kDa)

8.9

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	40 - 425	8.9e-56	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	486 - 624	5.2e-37	Plant cation/H(+) antiporter domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1049
AarI	CACCTGC	1 cut(s)	626
Acc36I	ACCTGC	2 cut(s)	626, 745
AccB7I	CCANNNNNTGG	2 cut(s)	747, 1298
AccII	CGCG	1 cut(s)	623
AclWI	GGATC	2 cut(s)	614, 724
AcoI	YGGCCR	5 cut(s)	337, 615, 652, 828, 1278
AcsI	RAATTY	4 cut(s)	183, 855, 1374, 1871
AcuI	CTGAAG	1 cut(s)	183
AcvI	CACGTG	2 cut(s)	1298, 1690
AfaI	GTAC	1 cut(s)	2207
AfeI	AGCGCT	1 cut(s)	1499
AfiI	CCNNNNNNNGG	5 cut(s)	747, 1298, 1693, 1895, 1993
AgsI	TTSAA	8 cut(s)	258, 589, 938, 991, 1434, 1487, 1509, 1876
AhdI	GACNNNNNGTC	1 cut(s)	946
AjnI	CCWGG	1 cut(s)	630
Alw21I	GWGCWC	9 cut(s)	254, 321, 332, 537, 767, 1143, 1170, 1371, 1838
Alw26I	GTCTC	3 cut(s)	557, 1633, 2055
Alw44I	GTGCAC	1 cut(s)	763
AlwI	GGATC	2 cut(s)	614, 724
AlwNI	CAGNNNCTG	1 cut(s)	2165
Ama87I	CYCGRG	1 cut(s)	1076
Aor51HI	AGCGCT	1 cut(s)	1499
ApaLI	GTGCAC	1 cut(s)	763
ApeKI	GCWGC	4 cut(s)	578, 581, 1443, 2156
ApoI	RAATTY	4 cut(s)	183, 855, 1374, 1871
ArsI	GACNNNNNNTTYG	4 cut(s)	1202, 1234, 1847, 1879
AseI	ATTAAT	1 cut(s)	923
Asp700I	GAANNNNTTC	1 cut(s)	859
AspLEI	GCGC	2 cut(s)	1500, 1831
AsuC2I	CCSGG	3 cut(s)	832, 1896, 1991
AsuHPI	GGTGA	8 cut(s)	16, 490, 650, 1240, 1310, 1483, 1766, 2067
AsuII	TTCGAA	2 cut(s)	1438, 1655
AvaI	CYCGRG	1 cut(s)	1076
AvaII	GGWCC	9 cut(s)	194, 685, 1394, 1519, 1633, 1855, 1984, 2122, 2274
BaeGI	GKGCMC	2 cut(s)	767, 1531
BalI	TGGCCA	2 cut(s)	654, 1280
BanII	GRGCYC	6 cut(s)	321, 332, 537, 668, 1170, 1371
BauI	CACGAG	1 cut(s)	1673
BbrPI	CACGTG	2 cut(s)	1298, 1690
BbsI	GAAGAC	5 cut(s)	278, 412, 466, 874, 945
Bbv12I	GWGCWC	9 cut(s)	254, 321, 332, 537, 767, 1143, 1170, 1371, 1838
BbvI	GCAGC	4 cut(s)	565, 568, 1455, 2168
BccI	CCATC	6 cut(s)	431, 503, 1270, 1745, 2024, 2186
BceAI	ACGGC	3 cut(s)	602, 1071, 1816
BcgI	CGANNNNNNTGC	6 cut(s)	391, 425, 581, 615, 1202, 1236
BciT130I	CCWGG	1 cut(s)	632
BclI	TGATCA	3 cut(s)	102, 1348, 1759
BcnI	CCSGG	3 cut(s)	832, 1896, 1991
BcoDI	GTCTC	3 cut(s)	557, 1633, 2055
BfaI	CTAG	4 cut(s)	1229, 2147, 2216, 2226
BfmI	CTRYAG	1 cut(s)	1609
BfoI	RGCGCY	1 cut(s)	1501
BfuAI	ACCTGC	2 cut(s)	626, 745
BglI	GCCNNNNNGGC	3 cut(s)	345, 575, 710
BisI	GCNGC	8 cut(s)	118, 400, 576, 579, 582, 1018, 1444, 2157
BlsI	GCNGC	8 cut(s)	119, 401, 577, 580, 583, 1019, 1445, 2158
Bme1390I	CCNGG	4 cut(s)	632, 832, 1896, 1991
Bme18I	GGWCC	9 cut(s)	194, 685, 1394, 1519, 1633, 1855, 1984, 2122, 2274
BmeRI	GACNNNNNGTC	1 cut(s)	946
BmeT110I	CYCGRG	1 cut(s)	1076
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	4 cut(s)	632, 832, 1896, 1991
BmsI	GCATC	4 cut(s)	38, 411, 531, 986
BpiI	GAAGAC	5 cut(s)	278, 412, 466, 874, 945
BplI	GAGNNNNNCTC	2 cut(s)	474, 506
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu14I	TTCGAA	2 cut(s)	1438, 1655
BpuMI	CCSGG	3 cut(s)	832, 1896, 1991
BsaAI	YACGTR	3 cut(s)	1013, 1298, 1690
BsaBI	GATNNNNATC	1 cut(s)	925
BsaI	GGTCTC	1 cut(s)	2055
BsaJI	CCNNGG	4 cut(s)	570, 630, 1053, 1858
BsaWI	WCCGGW	1 cut(s)	1267
BsaXI	ACNNNNNCTCC	6 cut(s)	314, 344, 810, 840, 864, 894
Bsc4I	CCNNNNNNNGG	5 cut(s)	747, 1298, 1693, 1895, 1993
Bse118I	RCCGGY	2 cut(s)	374, 759
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	4 cut(s)	162, 1101, 1745, 1795
Bse8I	GATNNNNATC	1 cut(s)	925
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	4 cut(s)	570, 630, 1053, 1858
BseGI	GGATG	2 cut(s)	1983, 2197
BseJI	GATNNNNATC	1 cut(s)	925
BseLI	CCNNNNNNNGG	5 cut(s)	747, 1298, 1693, 1895, 1993
BseMI	GCAATG	4 cut(s)	162, 1101, 1745, 1795
BseMII	CTCAG	5 cut(s)	317, 476, 566, 2157, 2202
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	1208
BseSI	GKGCMC	2 cut(s)	767, 1531
BseXI	GCAGC	4 cut(s)	565, 568, 1455, 2168
BseYI	CCCAGC	2 cut(s)	1064, 1592
Bsh1236I	CGCG	1 cut(s)	623
BsiHKAI	GWGCWC	9 cut(s)	254, 321, 332, 537, 767, 1143, 1170, 1371, 1838
BsiHKCI	CYCGRG	1 cut(s)	1076
BsiSI	CCGG	9 cut(s)	375, 760, 831, 951, 1112, 1268, 1636, 1895, 1991
BslFI	GGGAC	2 cut(s)	1093, 2209
BslI	CCNNNNNNNGG	5 cut(s)	747, 1298, 1693, 1895, 1993
BsmAI	GTCTC	3 cut(s)	557, 1633, 2055
BsmFI	GGGAC	2 cut(s)	1093, 2209
BsmI	GAATGC	1 cut(s)	1598
Bso31I	GGTCTC	1 cut(s)	2055
BsoBI	CYCGRG	1 cut(s)	1076
Bsp119I	TTCGAA	2 cut(s)	1438, 1655
Bsp19I	CCATGG	1 cut(s)	570
BspCNI	CTCAG	5 cut(s)	318, 475, 565, 2158, 2203
BspFNI	CGCG	1 cut(s)	623
BspHI	TCATGA	3 cut(s)	837, 1143, 1762
BspLI	GGNNCC	1 cut(s)	686
BspMI	ACCTGC	2 cut(s)	626, 745
BspPI	GGATC	2 cut(s)	614, 724
BspQI	GCTCTTC	1 cut(s)	1507
BspT104I	TTCGAA	2 cut(s)	1438, 1655
BspTNI	GGTCTC	1 cut(s)	2055
BsrDI	GCAATG	4 cut(s)	162, 1101, 1745, 1795
BsrFI	RCCGGY	2 cut(s)	374, 759
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	2 cut(s)	374, 759
BssECI	CCNNGG	4 cut(s)	570, 630, 1053, 1858
BssSI	CACGAG	1 cut(s)	1673
BssT1I	CCWWGG	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	1673
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	6 cut(s)	543, 644, 909, 1322, 1859, 2099
Bst6I	CTCTTC	3 cut(s)	1250, 1472, 1507
BstBAI	YACGTR	3 cut(s)	1013, 1298, 1690
BstBI	TTCGAA	2 cut(s)	1438, 1655
BstC8I	GCNNGC	5 cut(s)	376, 516, 520, 615, 757
BstDEI	CTNAG	8 cut(s)	313, 326, 462, 526, 552, 943, 2166, 2211
BstDSI	CCRYGG	3 cut(s)	570, 1053, 1858
BstF5I	GGATG	2 cut(s)	1983, 2197
BstFNI	CGCG	1 cut(s)	623
BstH2I	RGCGCY	1 cut(s)	1501
BstHHI	GCGC	2 cut(s)	1500, 1831
BstMAI	GTCTC	3 cut(s)	557, 1633, 2055
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	1 cut(s)	1386
BstSCI	CCNGG	4 cut(s)	630, 830, 1894, 1989
BstSFI	CTRYAG	1 cut(s)	1609
BstSLI	GKGCMC	2 cut(s)	767, 1531
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	4 cut(s)	565, 568, 1455, 2168
BstV2I	GAAGAC	5 cut(s)	278, 412, 466, 874, 945
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
BtgI	CCRYGG	3 cut(s)	570, 1053, 1858
BtsCI	GGATG	2 cut(s)	1983, 2197
BtsI	GCAGTG	2 cut(s)	1851, 2166
BtsIMutI	CAGTG	5 cut(s)	276, 333, 1851, 2166, 2208
BveI	ACCTGC	2 cut(s)	626, 745
Cac8I	GCNNGC	5 cut(s)	376, 516, 520, 615, 757
CaiI	CAGNNNCTG	1 cut(s)	2165
CciI	TCATGA	3 cut(s)	837, 1143, 1762
CfoI	GCGC	2 cut(s)	1500, 1831
Cfr10I	RCCGGY	2 cut(s)	374, 759
CpoI	CGGWCCG	1 cut(s)	1633
CseI	GACGC	1 cut(s)	1138
Csp6I	GTAC	1 cut(s)	2206
CspI	CGGWCCG	1 cut(s)	1633
CviQI	GTAC	1 cut(s)	2206
DdeI	CTNAG	8 cut(s)	313, 326, 462, 526, 552, 943, 2166, 2211
DraI	TTTAAA	1 cut(s)	63
DriI	GACNNNNNGTC	1 cut(s)	946
EaeI	YGGCCR	5 cut(s)	337, 615, 652, 828, 1278
Eam1104I	CTCTTC	3 cut(s)	1250, 1472, 1507
Eam1105I	GACNNNNNGTC	1 cut(s)	946
EarI	CTCTTC	3 cut(s)	1250, 1472, 1507
EciI	GGCGGA	1 cut(s)	1709
Ecl136II	GAGCTC	5 cut(s)	319, 330, 535, 1168, 1369
Eco130I	CCWWGG	1 cut(s)	570
Eco24I	GRGCYC	6 cut(s)	321, 332, 537, 668, 1170, 1371
Eco31I	GGTCTC	1 cut(s)	2055
Eco32I	GATATC	1 cut(s)	675
Eco47I	GGWCC	9 cut(s)	194, 685, 1394, 1519, 1633, 1855, 1984, 2122, 2274
Eco47III	AGCGCT	1 cut(s)	1499
Eco53kI	GAGCTC	5 cut(s)	319, 330, 535, 1168, 1369
Eco57I	CTGAAG	1 cut(s)	183
Eco72I	CACGTG	2 cut(s)	1298, 1690
Eco88I	CYCGRG	1 cut(s)	1076
EcoICRI	GAGCTC	5 cut(s)	319, 330, 535, 1168, 1369
EcoO109I	RGGNCCY	2 cut(s)	685, 2274
EcoRI	GAATTC	3 cut(s)	183, 855, 1374
EcoRII	CCWGG	1 cut(s)	630
EcoRV	GATATC	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	570
EcoT38I	GRGCYC	6 cut(s)	321, 332, 537, 668, 1170, 1371
ErhI	CCWWGG	1 cut(s)	570
FaqI	GGGAC	2 cut(s)	1093, 2209
FauI	CCCGC	1 cut(s)	527
FbaI	TGATCA	3 cut(s)	102, 1348, 1759
Fnu4HI	GCNGC	8 cut(s)	118, 400, 576, 579, 582, 1018, 1444, 2157
FokI	GGATG	2 cut(s)	1990, 2204
FriOI	GRGCYC	6 cut(s)	321, 332, 537, 668, 1170, 1371
Fsp4HI	GCNGC	8 cut(s)	118, 400, 576, 579, 582, 1018, 1444, 2157
FspBI	CTAG	4 cut(s)	1229, 2147, 2216, 2226
GlaI	GCGC	2 cut(s)	1499, 1830
GluI	GCNGC	8 cut(s)	118, 400, 576, 579, 582, 1018, 1444, 2157
GsaI	CCCAGC	2 cut(s)	1068, 1596
HaeII	RGCGCY	1 cut(s)	1501
HapII	CCGG	9 cut(s)	375, 760, 831, 951, 1112, 1268, 1636, 1895, 1991
HgaI	GACGC	1 cut(s)	1138
HhaI	GCGC	2 cut(s)	1500, 1831
Hin6I	GCGC	2 cut(s)	1498, 1829
HinP1I	GCGC	2 cut(s)	1498, 1829
HincII	GTYRAC	2 cut(s)	546, 1807
HindII	GTYRAC	2 cut(s)	546, 1807
HindIII	AAGCTT	1 cut(s)	1420
HpaI	GTTAAC	1 cut(s)	546
HpaII	CCGG	9 cut(s)	375, 760, 831, 951, 1112, 1268, 1636, 1895, 1991
HphI	GGTGA	8 cut(s)	16, 490, 650, 1240, 1310, 1483, 1766, 2067
Hpy166II	GTNNAC	9 cut(s)	459, 546, 765, 787, 1325, 1807, 1855, 2088, 2208
Hpy8I	GTNNAC	9 cut(s)	459, 546, 765, 787, 1325, 1807, 1855, 2088, 2208
Hpy99I	CGWCG	3 cut(s)	113, 596, 623
HpyAV	CCTTC	8 cut(s)	82, 207, 252, 514, 595, 724, 1192, 1999
HpyCH4III	ACNGT	6 cut(s)	543, 644, 909, 1322, 1859, 2099
HpyCH4IV	ACGT	5 cut(s)	594, 1012, 1297, 1689, 2259
HpyF3I	CTNAG	8 cut(s)	313, 326, 462, 526, 552, 943, 2166, 2211
HpySE526I	ACGT	5 cut(s)	594, 1012, 1297, 1689, 2259
HspAI	GCGC	2 cut(s)	1498, 1829
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Ksp22I	TGATCA	3 cut(s)	102, 1348, 1759
KspAI	GTTAAC	1 cut(s)	546
LguI	GCTCTTC	1 cut(s)	1507
Lsp1109I	GCAGC	4 cut(s)	565, 568, 1455, 2168
LweI	GCATC	4 cut(s)	38, 411, 531, 986
MaeI	CTAG	4 cut(s)	1229, 2147, 2216, 2226
MaeII	ACGT	5 cut(s)	594, 1012, 1297, 1689, 2259
MaeIII	GTNAC	1 cut(s)	638
MfeI	CAATTG	3 cut(s)	432, 1616, 2252
MflI	RGATCY	1 cut(s)	606
MlsI	TGGCCA	2 cut(s)	654, 1280
MluNI	TGGCCA	2 cut(s)	654, 1280
MlyI	GAGTC	4 cut(s)	882, 1130, 1223, 1635
MmeI	TCCRAC	5 cut(s)	757, 1546, 1775, 1955, 1962
Mox20I	TGGCCA	2 cut(s)	654, 1280
MroNI	GCCGGC	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	859
MscI	TGGCCA	2 cut(s)	654, 1280
MseI	TTAA	9 cut(s)	62, 545, 806, 812, 923, 1424, 1554, 1998, 2066
MslI	CAYNNNNRTG	1 cut(s)	725
Msp20I	TGGCCA	2 cut(s)	654, 1280
MspA1I	CMGCKG	1 cut(s)	1346
MspI	CCGG	9 cut(s)	375, 760, 831, 951, 1112, 1268, 1636, 1895, 1991
MspR9I	CCNGG	4 cut(s)	632, 832, 1896, 1991
MunI	CAATTG	3 cut(s)	432, 1616, 2252
Mva1269I	GAATGC	1 cut(s)	1598
MvaI	CCWGG	1 cut(s)	632
MvnI	CGCG	1 cut(s)	623
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	3 cut(s)	832, 1896, 1991
NcoI	CCATGG	1 cut(s)	570
NgoMIV	GCCGGC	1 cut(s)	374
NlaIV	GGNNCC	1 cut(s)	686
NmuCI	GTSAC	1 cut(s)	638
NspI	RCATGY	1 cut(s)	1386
NspV	TTCGAA	2 cut(s)	1438, 1655
PagI	TCATGA	3 cut(s)	837, 1143, 1762
PaqCI	CACCTGC	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	1507
PcsI	WCGNNNNNNNCGW	2 cut(s)	1318, 1564
PctI	GAATGC	1 cut(s)	1598
PdiI	GCCGGC	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	859
PfeI	GAWTC	6 cut(s)	266, 1072, 1108, 1302, 1430, 2016
PflMI	CCANNNNNTGG	2 cut(s)	747, 1298
PkrI	GCNGC	8 cut(s)	119, 401, 577, 580, 583, 1019, 1445, 2158
PleI	GAGTC	4 cut(s)	882, 1129, 1222, 1634
PmaCI	CACGTG	2 cut(s)	1298, 1690
PmlI	CACGTG	2 cut(s)	1298, 1690
PpsI	GAGTC	4 cut(s)	882, 1129, 1222, 1634
Ppu21I	YACGTR	3 cut(s)	1013, 1298, 1690
PpuMI	RGGWCCY	2 cut(s)	685, 2274
PshBI	ATTAAT	1 cut(s)	923
PsiI	TTATAA	1 cut(s)	1049
Psp124BI	GAGCTC	5 cut(s)	321, 332, 537, 1170, 1371
Psp5II	RGGWCCY	2 cut(s)	685, 2274
Psp6I	CCWGG	1 cut(s)	630
PspCI	CACGTG	2 cut(s)	1298, 1690
PspFI	CCCAGC	2 cut(s)	1064, 1592
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	686
PspPPI	RGGWCCY	2 cut(s)	685, 2274
PstNI	CAGNNNCTG	1 cut(s)	2165
PsuI	RGATCY	1 cut(s)	606
PvuII	CAGCTG	1 cut(s)	1346
RsaI	GTAC	1 cut(s)	2207
RsaNI	GTAC	1 cut(s)	2206
RseI	CAYNNNNRTG	1 cut(s)	725
Rsr2I	CGGWCCG	1 cut(s)	1633
RsrII	CGGWCCG	1 cut(s)	1633
SacI	GAGCTC	5 cut(s)	321, 332, 537, 1170, 1371
SapI	GCTCTTC	1 cut(s)	1507
SaqAI	TTAA	9 cut(s)	62, 545, 806, 812, 923, 1424, 1554, 1998, 2066
SatI	GCNGC	8 cut(s)	118, 400, 576, 579, 582, 1018, 1444, 2157
SchI	GAGTC	4 cut(s)	882, 1130, 1223, 1635
ScrFI	CCNGG	4 cut(s)	632, 832, 1896, 1991
SfaNI	GCATC	4 cut(s)	38, 411, 531, 986
SfcI	CTRYAG	1 cut(s)	1609
SfuI	TTCGAA	2 cut(s)	1438, 1655
SinI	GGWCC	9 cut(s)	194, 685, 1394, 1519, 1633, 1855, 1984, 2122, 2274
SmiMI	CAYNNNNRTG	1 cut(s)	725
SspI	AATATT	2 cut(s)	261, 2233
SspMI	CTAG	4 cut(s)	1229, 2147, 2216, 2226
SstI	GAGCTC	5 cut(s)	321, 332, 537, 1170, 1371
StyD4I	CCNGG	4 cut(s)	630, 830, 1894, 1989
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	6 cut(s)	543, 644, 909, 1322, 1859, 2099
TaiI	ACGT	5 cut(s)	597, 1015, 1300, 1692, 2262
TaqI	TCGA	9 cut(s)	17, 321, 929, 1438, 1558, 1567, 1655, 1951, 2022
TaqII	GACCGA	2 cut(s)	1621, 2139
TatI	WGTACW	1 cut(s)	2205
TauI	GCSGC	4 cut(s)	120, 402, 578, 1020
TfiI	GAWTC	6 cut(s)	266, 1072, 1108, 1302, 1430, 2016
Tru1I	TTAA	9 cut(s)	62, 545, 806, 812, 923, 1424, 1554, 1998, 2066
Tru9I	TTAA	9 cut(s)	62, 545, 806, 812, 923, 1424, 1554, 1998, 2066
TscAI	CASTG	5 cut(s)	276, 340, 1851, 2166, 2215
TseFI	GTSAC	1 cut(s)	638
TseI	GCWGC	4 cut(s)	578, 581, 1443, 2156
Tsp45I	GTSAC	1 cut(s)	638
TspGWI	ACGGA	1 cut(s)	1930
TspRI	CASTG	5 cut(s)	276, 340, 1851, 2166, 2215
Van91I	CCANNNNNTGG	2 cut(s)	747, 1298
VneI	GTGCAC	1 cut(s)	763
VpaK11BI	GGWCC	9 cut(s)	194, 685, 1394, 1519, 1633, 1855, 1984, 2122, 2274
VspI	ATTAAT	1 cut(s)	923
XapI	RAATTY	4 cut(s)	183, 855, 1374, 1871
XceI	RCATGY	1 cut(s)	1386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2116
XmnI	GAANNNNTTC	1 cut(s)	859
XspI	CTAG	4 cut(s)	1229, 2147, 2216, 2226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.