Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Reverse (-)

6613882 .. 6615421

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0085400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGACGCCGCCATTAGTTTTCTCAAGGATTTGGCTTTAAAGGAGACTATTTTCGCACTTGGAGTTCGAGTTGCAGACTTGGAGTTCCGATTCGCAGCAAAAGATTTGAAGTGTGATAAGGCCATTGACTTGTCCTGGGTGTGTGAAGAGAGCTCAGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

54

Amino Acids

6.04

Weight (kDa)

4.5

Isoelectric Point (pI)

20.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	9, 96
BlsI	GCNGC	2 cut(s)	10, 97
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	14
CviJI	RGCY	3 cut(s)	35, 122, 153
CviKI_1	RGCY	3 cut(s)	35, 122, 153
DdeI	CTNAG	1 cut(s)	154
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	9, 96
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	9, 96
GluI	GCNGC	2 cut(s)	9, 96
HaeIII	GGCC	1 cut(s)	122
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	89, 157
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	6
LpnPI	CCDG	2 cut(s)	121, 148
Lsp1109I	GCAGC	1 cut(s)	107
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	155
MseI	TTAA	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	10, 97
Psp124BI	GAGCTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	2 cut(s)	9, 96
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	1 cut(s)	155
SgeI	CNNG	7 cut(s)	37, 71, 80, 91, 142, 147, 148
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SsiI	CCGC	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	134
TaqI	TCGA	1 cut(s)	67
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseI	GCWGC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.