Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Forward (+)

11531711 .. 11548894

Gene Structure 17184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGGAACCTATGGTTCTGAACCTAACCAGCATGAGAACTTCTTCAGATGGAGCTTGGCAGGGTGATAATCCTCTGAACCATGCCTTCCCATTGTTGATAGTTCAGACCACTCTGGTCCTCTTCATCAGTCGCCTCTTAGCCTTCATTCTCAAACCACTCCGCCAACCCAAGGTCATTGCCGAGATCTTAGGTGGGATTTTGCTAGGACCTTCTGCACTTGGCCTGATCAAAGATTTCTCCCCCATCATATTCCCTTCATGGAGCACTCCCATACTCGAATCAGTAGCAAGCATCGGCCTCCTCTTCTACCTATTCCTCGTAGGCCTCGAGCTCGACTTGCGCTCCATTCGCCGCAGTGGCAAAAGCGCCATCACCATAGCACTCGCAGGCATTTCCCTCCCTTTCCTCATCGCTGTAGGAGTCACATTCCTCATGCGCAAGGCCATCAACGGGGTAGCCCTCTCCATCACCGCCTTCCCTGTCCTCGCACGCATCTTAGCAGAGCTCAAACTGCTCACCACACGCATAGGCGAGACGGCAATGGCTGCAGCAGCCTTCAACGACGTGGCTGCATGGATTCTGCTGGCCTTGGCCGTGGCCTTAGCAGGTGGGAACCTTAAAGGCCCTCTAGTCTCCATTTGGGTTCTCATTTCCGGCGTGGCTTTTGTTGCTTTTATGTTCATTCTGGTCCGTCCTTTGATGACTTGGGTTGCTAACCGCTGCTCATCTCAAATGGAGGACGAAGCTTATCTATGCTTCACCCTAGCCGGGGTCATGTTGTCCGGGTTCATGACTGACCTAATCGGTGTCCATGCCATCTTTGGGGCATTTATTTTTGGATTAACCATTCCGAAAGGGGGTGAATTTGCAGCCAAACTGACTAAAAGGATCGAGGATTTTGTGTCTGGTTTGCTTCTCCCTCTCTACTTTGCCTCGAGTGGTTTGAAGACTGACGTTACTAAAATACGTGGGATCAAGGCATGGGGTCTTTTGGCTTTGGTTATATCAGTTTCTTGCACTGGAAAAATTTTGGGAACGTTTTTGGTTGCAATGATGAGTATGATACCAGTGAGGGAGTCATTAGCTCTAGGTGTACTGATGAATACTAAAGGATTGGTGGAGCTTGTTGTTCTGAATATTGGCAAGGAGAAAAAGCTCTCGTCGAACTTGCTTAATTTACAGATTCTAAACGACGAGATGTTTGCTATTTTTGTGCTGATGGCACTTTTCACCACCTTCATGACGACACCAATAGTGATGGCCATTTACAAACCCTATGTCGTTGCTTCCCAATCTGAGAGTAGTTTAGAGAGACAGAATTCTCCCAGCAAGAACCCGAAGAAAAAGAAGGAACTTCTAATCCTTGCTTGTATTCATGGACCGGGAAGTGTACCCTCCCTTATCAACCTCATTGAGTCGACCGGAACCTCCTCCGAGAATTCTCTTCTCAAAGTTTACGTGATGCATCTTGTTGAACTTACTGATCGTTCATCCTCCATTATGATGGTACACAAAGTTCGGAAAAACGGCTTGCCCTTCATCAACCGCTTTTGTCTAGGGGTGGCACGCCATATCGCCTCAGCATTTGAAGCTTATAGTCAAGTTGGTCAAGTCACCATCCTTCACACAACAGCCATCTCGGCTTTGCCTACGATGTACGAGGATATTCTCCATGTTGCGGAAGCCAAGACGGTGTCCATCATTATCTTGCCTTTCAACAAACAGGGGAATAAACAGGGTGAAGAGACGATGGATAATTTAGAGCATCGCTGGAGAGCAGTCAATGAGAGAGTTCTAAAATGTGCTAATTGCTCAGTAGCATTGTTCGTGGATCGTGGACTCGGTGTTGGAGCTGGGAAGGGTGCAAAGACTACCAATCTGAAGAGGGTGTGCATTCTATTCTTGGGTGGAACCGATGACCGCAGGGCACTGCAGTATGTTGCGGGAATTGCAAATCAGAGCGTTGTAGTTACCGTTGTGAGGTGTTTTGAGCACAGCATTACTCCTCCAAGCTCCATCACCAACCCCGACAGGGATCTTGATGAGACTGCAGTGGCAGAGTTTCGAAGGCAGAATGGGTCGGTGGAATTCATAGAGAAGGTGGTAGTCGGCAACATTATAGAAACGGTGGCGGGCATAGTTCAGGGCAGGGAATACAACCTGGTGATCGTGGGGAAGCAGCACCACCCTTCAACAATTGTTGCAGAATTGGCTCACAATCAGCTGGAGCATACCGAACTGGGACCAATTGGAGACGCATTAGCTTCATCCTCACATGGGATTTCGTGCTCCGTGCTTGTGATACAAACACCACAGATTAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

775

Amino Acids

83.8

Weight (kDa)

9.05

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	40 - 419	7.3e-59	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	483 - 623	1.5e-30	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	630 - 769	2.2e-10	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	596
Acc16I	TGCGCA	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	1418
AciI	CCGC	9 cut(s)	160, 352, 471, 718, 1546, 1679, 1921, 1943, 2132
AclI	AACGTT	1 cut(s)	1037
AclWI	GGATC	4 cut(s)	896, 980, 1839, 2043
AcoI	YGGCCR	2 cut(s)	591, 1260
AcsI	RAATTY	5 cut(s)	863, 1026, 1318, 1438, 2087
AcuI	CTGAAG	2 cut(s)	27, 1901
AfaI	GTAC	4 cut(s)	1095, 1392, 1509, 1658
AgsI	TTSAA	6 cut(s)	559, 946, 1475, 1589, 1717, 2193
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	2160
AloI	GAACNNNNNNTCC	2 cut(s)	1344, 1376
Alw21I	GWGCWC	5 cut(s)	266, 333, 507, 1995, 2291
Alw26I	GTCTC	6 cut(s)	527, 637, 1306, 1739, 2039, 2247
AlwI	GGATC	4 cut(s)	896, 980, 1839, 2043
Ama87I	CYCGRG	2 cut(s)	326, 934
AoxI	GGCC	9 cut(s)	220, 295, 322, 441, 585, 591, 597, 622, 1260
ApeKI	GCWGC	7 cut(s)	545, 548, 551, 569, 720, 869, 2179
ApoI	RAATTY	5 cut(s)	863, 1026, 1318, 1438, 2087
ArsI	GACNNNNNNTTYG	4 cut(s)	1184, 1216, 1263, 1295
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	3 cut(s)	342, 368, 438
AspS9I	GGNCC	6 cut(s)	115, 206, 623, 688, 1379, 2243
AsuC2I	CCSGG	3 cut(s)	769, 784, 1383
AsuII	TTCGAA	1 cut(s)	2065
AvaI	CYCGRG	2 cut(s)	326, 934
AvaII	GGWCC	5 cut(s)	115, 206, 688, 1379, 2243
BaeGI	GKGCMC	1 cut(s)	1930
BalI	TGGCCA	1 cut(s)	1262
BanII	GRGCYC	2 cut(s)	333, 507
BbsI	GAAGAC	1 cut(s)	953
Bbv12I	GWGCWC	5 cut(s)	266, 333, 507, 1995, 2291
BbvCI	CCTCAGC	1 cut(s)	1579
BbvI	GCAGC	7 cut(s)	532, 556, 560, 563, 707, 881, 2191
BceAI	ACGGC	3 cut(s)	552, 578, 1543
BcgI	CGANNNNNNTGC	4 cut(s)	551, 585, 1184, 1218
BciT130I	CCWGG	1 cut(s)	2162
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	3 cut(s)	769, 784, 1383
BcoDI	GTCTC	6 cut(s)	527, 637, 1306, 1739, 2039, 2247
BfaI	CTAG	5 cut(s)	203, 629, 764, 1088, 1556
BfmI	CTRYAG	4 cut(s)	414, 546, 1931, 2049
BfoI	RGCGCY	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	596
BglI	GCCNNNNNGGC	2 cut(s)	357, 1640
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	8 cut(s)	352, 546, 549, 552, 570, 721, 870, 2180
BlsI	GCNGC	8 cut(s)	353, 547, 550, 553, 571, 722, 871, 2181
Bme1390I	CCNGG	4 cut(s)	769, 784, 1383, 2162
Bme18I	GGWCC	5 cut(s)	115, 206, 688, 1379, 2243
BmeT110I	CYCGRG	2 cut(s)	326, 934
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	6 cut(s)	115, 206, 623, 688, 1379, 2243
BmiI	GGNNCC	5 cut(s)	6, 614, 1426, 1912, 2244
BmrFI	CCNGG	4 cut(s)	769, 784, 1383, 2162
BmrI	ACTGGG	1 cut(s)	2249
BmsI	GCATC	5 cut(s)	300, 501, 1452, 1474, 1774
BmuI	ACTGGG	1 cut(s)	2249
BpiI	GAAGAC	1 cut(s)	953
BpmI	CTGGAG	2 cut(s)	1792, 2246
Bpu10I	CCTNAGC	2 cut(s)	601, 1579
Bpu14I	TTCGAA	1 cut(s)	2065
BpuMI	CCSGG	3 cut(s)	769, 784, 1383
BsaAI	YACGTR	2 cut(s)	968, 1459
BsaJI	CCNNGG	4 cut(s)	168, 588, 594, 768
BsaWI	WCCGGW	1 cut(s)	1421
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bse1I	ACTGG	3 cut(s)	1024, 1067, 2244
Bse3DI	GCAATG	3 cut(s)	174, 546, 1056
BseBI	CCWGG	1 cut(s)	2162
BseDI	CCNNGG	4 cut(s)	168, 588, 594, 768
BseGI	GGATG	3 cut(s)	1490, 1617, 2267
BseMI	GCAATG	3 cut(s)	174, 546, 1056
BseMII	CTCAG	3 cut(s)	1287, 1593, 1827
BseNI	ACTGG	3 cut(s)	1024, 1067, 2244
BseRI	GAGGAG	3 cut(s)	290, 1420, 1995
BseSI	GKGCMC	1 cut(s)	1930
BseXI	GCAGC	7 cut(s)	532, 556, 560, 563, 707, 881, 2191
BseYI	CCCAGC	2 cut(s)	1325, 1853
BsgI	GTGCAG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	1422
BshFI	GGCC	9 cut(s)	222, 297, 324, 443, 587, 593, 599, 624, 1262
BsiEI	CGRYCG	1 cut(s)	1422
BsiHKAI	GWGCWC	5 cut(s)	266, 333, 507, 1995, 2291
BsiHKCI	CYCGRG	2 cut(s)	326, 934
BsiSI	CCGG	5 cut(s)	654, 768, 783, 1382, 1422
BslFI	GGGAC	1 cut(s)	2256
BsmAI	GTCTC	6 cut(s)	527, 637, 1306, 1739, 2039, 2247
BsmBI	CGTCTC	3 cut(s)	527, 1739, 2247
BsmFI	GGGAC	1 cut(s)	2256
BsmI	GAATGC	1 cut(s)	1893
BsnI	GGCC	9 cut(s)	222, 297, 324, 443, 587, 593, 599, 624, 1262
BsoBI	CYCGRG	2 cut(s)	326, 934
Bsp119I	TTCGAA	1 cut(s)	2065
Bsp1286I	GDGCHC	6 cut(s)	266, 333, 507, 1930, 1995, 2291
Bsp143I	GATC	8 cut(s)	183, 225, 888, 972, 1483, 1831, 2035, 2166
BspACI	CCGC	9 cut(s)	160, 352, 471, 718, 1546, 1679, 1921, 1943, 2132
BspANI	GGCC	9 cut(s)	222, 297, 324, 443, 587, 593, 599, 624, 1262
BspCNI	CTCAG	3 cut(s)	1288, 1592, 1826
BspHI	TCATGA	2 cut(s)	789, 1239
BspLI	GGNNCC	5 cut(s)	6, 614, 1426, 1912, 2244
BspMAI	CTGCAG	3 cut(s)	550, 1935, 2053
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	4 cut(s)	896, 980, 1839, 2043
BspT104I	TTCGAA	1 cut(s)	2065
BsrDI	GCAATG	3 cut(s)	174, 546, 1056
BsrI	ACTGG	3 cut(s)	1024, 1067, 2244
BssECI	CCNNGG	4 cut(s)	168, 588, 594, 768
BssMI	GATC	8 cut(s)	183, 225, 888, 972, 1483, 1831, 2035, 2166
BssT1I	CCWWGG	2 cut(s)	168, 588
Bst2UI	CCWGG	1 cut(s)	2162
Bst4CI	ACNGT	3 cut(s)	1693, 1975, 2128
Bst6I	CTCTTC	5 cut(s)	125, 308, 1449, 1737, 1877
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	2 cut(s)	968, 1459
BstBI	TTCGAA	1 cut(s)	2065
BstC8I	GCNNGC	7 cut(s)	289, 388, 490, 585, 1532, 1567, 2134
BstDEI	CTNAG	7 cut(s)	136, 187, 496, 601, 1296, 1579, 1813
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	3 cut(s)	1490, 1617, 2267
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	3 cut(s)	342, 368, 438
BstKTI	GATC	8 cut(s)	186, 228, 891, 975, 1486, 1834, 2038, 2169
BstMAI	GTCTC	6 cut(s)	527, 637, 1306, 1739, 2039, 2247
BstMBI	GATC	8 cut(s)	183, 225, 888, 972, 1483, 1831, 2035, 2166
BstMCI	CGRYCG	1 cut(s)	1422
BstNI	CCWGG	1 cut(s)	2162
BstSCI	CCNGG	4 cut(s)	767, 782, 1381, 2160
BstSFI	CTRYAG	4 cut(s)	414, 546, 1931, 2049
BstSLI	GKGCMC	1 cut(s)	1930
BstV1I	GCAGC	7 cut(s)	532, 556, 560, 563, 707, 881, 2191
BstV2I	GAAGAC	1 cut(s)	953
BstX2I	RGATCY	2 cut(s)	183, 2035
BstXI	CCANNNNNNTGG	1 cut(s)	1504
BstYI	RGATCY	2 cut(s)	183, 2035
BsuRI	GGCC	9 cut(s)	222, 297, 324, 443, 587, 593, 599, 624, 1262
BtgI	CCRYGG	1 cut(s)	594
BtgZI	GCGATG	2 cut(s)	394, 1751
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	1490, 1617, 2267
BtsI	GCAGTG	3 cut(s)	361, 1928, 2058
BtsIMutI	CAGTG	5 cut(s)	361, 1017, 1074, 1928, 2058
BveI	ACCTGC	1 cut(s)	596
Cac8I	GCNNGC	7 cut(s)	289, 388, 490, 585, 1532, 1567, 2134
CciI	TCATGA	2 cut(s)	789, 1239
CfoI	GCGC	3 cut(s)	342, 368, 438
Cfr13I	GGNCC	6 cut(s)	115, 206, 623, 688, 1379, 2243
CseI	GACGC	1 cut(s)	2264
CsiI	ACCWGGT	1 cut(s)	2160
Csp6I	GTAC	4 cut(s)	1094, 1391, 1508, 1657
CviQI	GTAC	4 cut(s)	1094, 1391, 1508, 1657
DdeI	CTNAG	7 cut(s)	136, 187, 496, 601, 1296, 1579, 1813
DpnI	GATC	8 cut(s)	185, 227, 890, 974, 1485, 1833, 2037, 2168
DpnII	GATC	8 cut(s)	183, 225, 888, 972, 1483, 1831, 2035, 2166
EaeI	YGGCCR	2 cut(s)	591, 1260
Eam1104I	CTCTTC	5 cut(s)	125, 308, 1449, 1737, 1877
EarI	CTCTTC	5 cut(s)	125, 308, 1449, 1737, 1877
EciI	GGCGGA	1 cut(s)	149
Ecl136II	GAGCTC	2 cut(s)	331, 505
Eco130I	CCWWGG	2 cut(s)	168, 588
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	333, 507
Eco47I	GGWCC	5 cut(s)	115, 206, 688, 1379, 2243
Eco53kI	GAGCTC	2 cut(s)	331, 505
Eco57I	CTGAAG	2 cut(s)	27, 1901
Eco88I	CYCGRG	2 cut(s)	326, 934
EcoICRI	GAGCTC	2 cut(s)	331, 505
EcoO109I	RGGNCCY	2 cut(s)	206, 623
EcoRI	GAATTC	3 cut(s)	1318, 1438, 2087
EcoRII	CCWGG	1 cut(s)	2160
EcoT14I	CCWWGG	2 cut(s)	168, 588
EcoT22I	ATGCAT	1 cut(s)	1467
EcoT38I	GRGCYC	2 cut(s)	333, 507
ErhI	CCWWGG	2 cut(s)	168, 588
Esp3I	CGTCTC	3 cut(s)	527, 1739, 2247
FaqI	GGGAC	1 cut(s)	2256
FauI	CCCGC	2 cut(s)	1936, 2125
FbaI	TGATCA	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	1418
Fnu4HI	GCNGC	8 cut(s)	352, 546, 549, 552, 570, 721, 870, 2180
FokI	GGATG	3 cut(s)	1477, 1604, 2254
FriOI	GRGCYC	2 cut(s)	333, 507
Fsp4HI	GCNGC	8 cut(s)	352, 546, 549, 552, 570, 721, 870, 2180
FspBI	CTAG	5 cut(s)	203, 629, 764, 1088, 1556
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	3 cut(s)	341, 367, 437
GluI	GCNGC	8 cut(s)	352, 546, 549, 552, 570, 721, 870, 2180
GsaI	CCCAGC	2 cut(s)	1329, 1857
GsuI	CTGGAG	2 cut(s)	1792, 2246
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	9 cut(s)	222, 297, 324, 443, 587, 593, 599, 624, 1262
HapII	CCGG	5 cut(s)	654, 768, 783, 1382, 1422
HgaI	GACGC	1 cut(s)	2264
HhaI	GCGC	3 cut(s)	342, 368, 438
Hin6I	GCGC	3 cut(s)	340, 366, 436
HinP1I	GCGC	3 cut(s)	340, 366, 436
HincII	GTYRAC	1 cut(s)	1419
HindII	GTYRAC	1 cut(s)	1419
HindIII	AAGCTT	2 cut(s)	744, 1590
HinfI	GANTC	7 cut(s)	278, 420, 577, 1076, 1183, 1415, 1839
HpaII	CCGG	5 cut(s)	654, 768, 783, 1382, 1422
Hpy166II	GTNNAC	6 cut(s)	1094, 1391, 1419, 1456, 1510, 1838
Hpy188III	TCNNGA	3 cut(s)	790, 1240, 2039
Hpy8I	GTNNAC	6 cut(s)	1094, 1391, 1419, 1456, 1510, 1838
Hpy99I	CGWCG	3 cut(s)	566, 1165, 1196
HpyCH4III	ACNGT	3 cut(s)	1693, 1975, 2128
HpyCH4IV	ACGT	5 cut(s)	564, 954, 967, 1037, 1458
HpyF3I	CTNAG	7 cut(s)	136, 187, 496, 601, 1296, 1579, 1813
HpySE526I	ACGT	5 cut(s)	564, 954, 967, 1037, 1458
HspAI	GCGC	3 cut(s)	340, 366, 436
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	8 cut(s)	183, 225, 888, 972, 1483, 1831, 2035, 2166
LmnI	GCTCC	8 cut(s)	50, 261, 347, 1120, 1850, 2018, 2227, 2294
Lsp1109I	GCAGC	7 cut(s)	532, 556, 560, 563, 707, 881, 2191
LweI	GCATC	5 cut(s)	300, 501, 1452, 1474, 1774
MabI	ACCWGGT	1 cut(s)	2160
MaeI	CTAG	5 cut(s)	203, 629, 764, 1088, 1556
MaeII	ACGT	5 cut(s)	564, 954, 967, 1037, 1458
MaeIII	GTNAC	4 cut(s)	421, 955, 1612, 1969
MalI	GATC	8 cut(s)	185, 227, 890, 974, 1485, 1833, 2037, 2168
MboI	GATC	8 cut(s)	183, 225, 888, 972, 1483, 1831, 2035, 2166
MboII	GAAGA	8 cut(s)	33, 112, 295, 958, 1351, 1436, 1754, 1894
MfeI	CAATTG	2 cut(s)	2196, 2247
MflI	RGATCY	2 cut(s)	183, 2035
MhlI	GDGCHC	6 cut(s)	266, 333, 507, 1930, 1995, 2291
MlsI	TGGCCA	1 cut(s)	1262
MluNI	TGGCCA	1 cut(s)	1262
MlyI	GAGTC	4 cut(s)	429, 1085, 1424, 1833
MmeI	TCCRAC	1 cut(s)	1828
Mox20I	TGGCCA	1 cut(s)	1262
Mph1103I	ATGCAT	1 cut(s)	1467
MroXI	GAANNNNTTC	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	1262
MseI	TTAA	3 cut(s)	618, 842, 1173
MslI	CAYNNNNRTG	2 cut(s)	1238, 1502
Msp20I	TGGCCA	1 cut(s)	1262
MspA1I	CMGCKG	2 cut(s)	720, 2224
MspI	CCGG	5 cut(s)	654, 768, 783, 1382, 1422
MspR9I	CCNGG	4 cut(s)	769, 784, 1383, 2162
MunI	CAATTG	2 cut(s)	2196, 2247
Mva1269I	GAATGC	1 cut(s)	1893
MvaI	CCWGG	1 cut(s)	2162
NciI	CCSGG	3 cut(s)	769, 784, 1383
NdeII	GATC	8 cut(s)	183, 225, 888, 972, 1483, 1831, 2035, 2166
NlaIV	GGNNCC	5 cut(s)	6, 614, 1426, 1912, 2244
NmeAIII	GCCGAG	2 cut(s)	205, 1619
NmuCI	GTSAC	2 cut(s)	421, 1612
NsbI	TGCGCA	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	1467
NspV	TTCGAA	1 cut(s)	2065
PaeR7I	CTCGAG	2 cut(s)	326, 934
PagI	TCATGA	2 cut(s)	789, 1239
PaqCI	CACCTGC	1 cut(s)	596
PceI	AGGCCT	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PctI	GAATGC	1 cut(s)	1893
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	278, 577, 1183
PflFI	GACNNNGTC	1 cut(s)	1693
PkrI	GCNGC	8 cut(s)	353, 547, 550, 553, 571, 722, 871, 2181
PleI	GAGTC	4 cut(s)	428, 1084, 1423, 1833
PpsI	GAGTC	4 cut(s)	428, 1084, 1423, 1833
Ppu21I	YACGTR	2 cut(s)	968, 1459
PpuMI	RGGWCCY	1 cut(s)	206
Psp124BI	GAGCTC	2 cut(s)	333, 507
Psp1406I	AACGTT	1 cut(s)	1037
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	2160
PspFI	CCCAGC	2 cut(s)	1325, 1853
PspGI	CCWGG	1 cut(s)	2160
PspN4I	GGNNCC	5 cut(s)	6, 614, 1426, 1912, 2244
PspPI	GGNCC	6 cut(s)	115, 206, 623, 688, 1379, 2243
PspPPI	RGGWCCY	1 cut(s)	206
PspXI	VCTCGAGB	2 cut(s)	326, 934
PsrI	GAACNNNNNNTAC	2 cut(s)	1500, 1532
PstI	CTGCAG	3 cut(s)	550, 1935, 2053
PsuI	RGATCY	2 cut(s)	183, 2035
PsyI	GACNNNGTC	1 cut(s)	1693
PvuII	CAGCTG	1 cut(s)	2224
RsaI	GTAC	4 cut(s)	1095, 1392, 1509, 1658
RsaNI	GTAC	4 cut(s)	1094, 1391, 1508, 1657
RseI	CAYNNNNRTG	2 cut(s)	1238, 1502
SacI	GAGCTC	2 cut(s)	333, 507
SalI	GTCGAC	1 cut(s)	1417
SaqAI	TTAA	3 cut(s)	618, 842, 1173
SatI	GCNGC	8 cut(s)	352, 546, 549, 552, 570, 721, 870, 2180
Sau3AI	GATC	8 cut(s)	183, 225, 888, 972, 1483, 1831, 2035, 2166
Sau96I	GGNCC	6 cut(s)	115, 206, 623, 688, 1379, 2243
SchI	GAGTC	4 cut(s)	429, 1085, 1424, 1833
ScrFI	CCNGG	4 cut(s)	769, 784, 1383, 2162
SduI	GDGCHC	6 cut(s)	266, 333, 507, 1930, 1995, 2291
SexAI	ACCWGGT	1 cut(s)	2160
SfaNI	GCATC	5 cut(s)	300, 501, 1452, 1474, 1774
SfcI	CTRYAG	4 cut(s)	414, 546, 1931, 2049
Sfr274I	CTCGAG	2 cut(s)	326, 934
SfuI	TTCGAA	1 cut(s)	2065
SinI	GGWCC	5 cut(s)	115, 206, 688, 1379, 2243
SlaI	CTCGAG	2 cut(s)	326, 934
SmiMI	CAYNNNNRTG	2 cut(s)	1238, 1502
SmlI	CTYRAG	2 cut(s)	326, 934
SmoI	CTYRAG	2 cut(s)	326, 934
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	9 cut(s)	160, 352, 471, 718, 1546, 1679, 1921, 1943, 2132
SspI	AATATT	1 cut(s)	1138
SspMI	CTAG	5 cut(s)	203, 629, 764, 1088, 1556
SstI	GAGCTC	2 cut(s)	333, 507
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	4 cut(s)	767, 782, 1381, 2160
StyI	CCWWGG	2 cut(s)	168, 588
TaaI	ACNGT	3 cut(s)	1693, 1975, 2128
TaiI	ACGT	5 cut(s)	567, 957, 970, 1040, 1461
TaqI	TCGA	8 cut(s)	276, 327, 333, 891, 935, 1163, 1418, 2065
TatI	WGTACW	1 cut(s)	1093
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	278, 577, 1183
Tru1I	TTAA	3 cut(s)	618, 842, 1173
Tru9I	TTAA	3 cut(s)	618, 842, 1173
TscAI	CASTG	5 cut(s)	361, 1024, 1074, 1935, 2058
TseFI	GTSAC	2 cut(s)	421, 1612
TseI	GCWGC	7 cut(s)	545, 548, 551, 569, 720, 869, 2179
Tsp45I	GTSAC	2 cut(s)	421, 1612
TspGWI	ACGGA	2 cut(s)	680, 2281
TspRI	CASTG	5 cut(s)	361, 1024, 1074, 1935, 2058
Tth111I	GACNNNGTC	1 cut(s)	1693
VpaK11BI	GGWCC	5 cut(s)	115, 206, 688, 1379, 2243
XapI	RAATTY	5 cut(s)	863, 1026, 1318, 1438, 2087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XhoI	CTCGAG	2 cut(s)	326, 934
XmiI	GTMKAC	1 cut(s)	1418
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	5 cut(s)	203, 629, 764, 1088, 1556
Zsp2I	ATGCAT	1 cut(s)	1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.