Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Forward (+)

12874261 .. 12879733

Gene Structure 5473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG154200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGGTGAATATAACCACCATCAGAACAGCATCAAATGGCCTGTGGCAAGGCGACAACCCTTTAAACTTCGCCTTCCCACTCCTAATAGTTCAGACCACCTTGATCATCGTCGTCAGCCGCTTCCTTGGTTTCCTACTGAAACCCCTCCACCAACCCAAAGTCATTGCAGAGATTGTCGGTGGAATTCTGCTTGGTCCTTCAGCTTTCGGACGAAACATATATTACTTGCACAAAATCTTTCCTTCATGGGGCACTCCAATATTAGAATCAGTGGCAAGTATTGGTCTTCTATTTTACTTGTTCCTTGTAGGCTTAGAGGTCGACCTGAGCTCCACTCGCCGAAGTGGCAGAAGGGGTTTCAGCATAGCCCTCGCCGGCATAACGCTCCCTTTCCTCTGCGGCATCGGCGTCGCTCTGGTCTTCCGCAAAACAATTGATGGAGCTGACAAAGCAGGGTTCACTCAGTTCCTTGTCTTCATGGGAGTTGCCCTCTCCATCACCGCCTTCCCTGTGCTTGCCCGCATCTTAGCGGAGCTCAAACTTTTAACAACTCAGATTGGGGAGACTGCCATGGCGGCTGCTGCCGTCAACGACGTTGGTGCATGGATCTTGCTGGCCGTGGCCGTGGCCCTGGCAGGTGACGGTGCTGGTGGCCACAACAAGAGCCCTTTGATATCCATTTGGGTCCTCCTTTCAGGTGTTGCCTTTGTGGCCTTCATGATGGTCGTGATCCGACCTGCCATGAAATGGGTCGCCAGCCGGTGCCCACCGGAGCAAGATGTCGTGGACGAAGCCTATATTTGCTTAACCTTAACCGGAGTAATGGTGGCCGGGTTCATGACTGACATAATTGGAATTCATTCCATATTTGGAGCTTTCATCTTCGGACTCACAATTCCGAAAGGACAGTTTGCAGATAGATTAATATCGAGGATTGAAGACTTTGTGTCCGGCTTGTTGCTTCCGCTTTACTTTGCATCAAGTGGGTTGAAAACAGATGTGGCTAAAATACGTGGCGGCAGGGCATGGGGGTTGTTGGCTCTGGTTATAACCACGGCTTGCGCTGGGAAGATTCTCGGGACGTTTGTGGTGGCAATGATGTTTATGATTCCGGCCAGAGAGTCATTGACGCTTGGTGTGCTCATGAACACTAAAGGGTTGGTGGAGCTCATTGTTCTAAACATTGGCAAGGAGCAGAAGGTGCTAAATGACGAGTCATTTGCAATTCTAGTCCTCATGGCACTCTTCACCACCTTCATTACATGTCCGGTAGTGATGGCCATTTACAGACCGGCACGTGGAGACTCTATTCGCACTCACCGTAAACTTTGTGACCTCTCCACAGCTGATCCAGCCGCCAAAGACGAGCTCCGAATTCTTGCATGTGTTCATGGTCCAAACAATGCACCCTCGCTCATAAGCTTAATAGATTCAATTCGAAGCACCAAAAAATCCGAACTCAAACTCTTTCTAATGCACCTTGTTGAACTCACCGAGCGCTCTTCTTCAATTGTTATGGTTCAACGGGCTCGAAAAAATGGGTTTCCTTTCTTTCGTCGAACGCCTCGAGGTGAGTGGTATGGTAGGGTTGCTGGGGCATTCCAAGCCTATAGTCAATTGGGCCGAGTCACGGTCCGGCCCACAACCGCAATTTCGGCGTTGTCCACAATGTATGAGGATATTTGCCATGCGGCGGACGAGAAGAGGGCGGCGATGATCGTCTTGCCATTCCACAAGCAATGGAGATGTGATGGTGATGATCATGAGAAAAAAGAGGTCAATGTGGGCAATGATTGGAGAGGGGTCAACCAAAGAGTGCTCCAAAATGCGCCGTGCTCGGTTGCAGTGCTTGTGGACCGTGGATTTGATAATTTCAAAGCCCAAAGTCTCGAGCCGGATAAGGTTGTGGCCCTACGGATTTGTATTGTGTTTTTGGGTGGGCCTGATGATCGAGAGGCCTTGGAATTGGGTGGTCGGATGGCTGACCACCCGGCGGTTAAAGTGAAGGTTGTGAGGTTCGTCGAGAAAGAAGGTCTGGAGAGTAGTATTGGCTCTCATGGGCTTATGTTAAAGCCTTCACCCACCAAGTCCACCGAGAACAGTTGTAGCTTCTCCACAGCCATAATGGACCGAGAGAAAGAAAAGGAACTAGATGAGGCTGCAGTGGCTGAGTTCAGGAGCAAGTTGGTGGAGGATGGGACGGCAGAGTACACTGAGCTAGTGGTGGCTAGGAATATTCTGGAGGGGGTGTTGGCAATTGGAAGCAGTGGAGATCAGGATCTAATAATAGTAGGAAAAGGACGGTTCCCATCAAGTTTGGTAGCGGAATTGGCAGACCGACAAGCGGAGCACGCTGAGCTGGGGCCTGTCGGAGACATTTTGGCCTATTCCGGCCATGGTGTGGTCTCATCAATCCTTGTGATTCAACAGCACAACGTAGCTCATGCGGTGGAAGCTCCAGTGTCCAAGATGGTGCGTGGTGAGTGTGAAAAGTTTGCCCCTGATGAATCCTCCAGTGTACTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

842

Amino Acids

91.13

Weight (kDa)

7.89

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	39 - 421	1.7e-54	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	487 - 623	2.4e-37	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	638 - 811	8.7e-09	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1049
AarI	CACCTGC	1 cut(s)	626
AbsI	CCTCGAGG	1 cut(s)	1566
Acc36I	ACCTGC	2 cut(s)	626, 745
AccB1I	GGYRCC	1 cut(s)	762
AccB7I	CCANNNNNTGG	2 cut(s)	747, 2401
AccI	GTMKAC	1 cut(s)	321
AclWI	GGATC	4 cut(s)	614, 724, 1343, 2286
AcoI	YGGCCR	7 cut(s)	615, 621, 652, 828, 1113, 1278, 2392
AcsI	RAATTY	3 cut(s)	183, 855, 1374
AcuI	CTGAAG	1 cut(s)	183
AcvI	CACGTG	1 cut(s)	1298
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	2 cut(s)	2210, 2520
AfeI	AGCGCT	1 cut(s)	1499
AfiI	CCNNNNNNNGG	8 cut(s)	248, 747, 1298, 1630, 1693, 1993, 2344, 2401
AflIII	ACRYGT	1 cut(s)	1262
AgsI	TTSAA	8 cut(s)	938, 991, 1434, 1487, 1509, 1523, 1876, 2426
AhdI	GACNNNNNGTC	1 cut(s)	946
AjnI	CCWGG	1 cut(s)	630
Alw21I	GWGCWC	8 cut(s)	332, 537, 1143, 1170, 1371, 1821, 1838, 2352
Alw26I	GTCTC	5 cut(s)	557, 1296, 1892, 2367, 2410
AlwI	GGATC	4 cut(s)	614, 724, 1343, 2286
AlwNI	CAGNNNCTG	1 cut(s)	2168
Ama87I	CYCGRG	3 cut(s)	1076, 1566, 1889
Aor51HI	AGCGCT	1 cut(s)	1499
ApeKI	GCWGC	3 cut(s)	578, 581, 2159
ApoI	RAATTY	3 cut(s)	183, 855, 1374
ArsI	GACNNNNNNTTYG	4 cut(s)	1202, 1234, 1847, 1879
AseI	ATTAAT	1 cut(s)	923
Asp700I	GAANNNNTTC	1 cut(s)	859
AspLEI	GCGC	3 cut(s)	1064, 1500, 1831
AsuC2I	CCSGG	2 cut(s)	832, 1991
AsuII	TTCGAA	1 cut(s)	1438
AvaI	CYCGRG	3 cut(s)	1076, 1566, 1889
AvaII	GGWCC	6 cut(s)	194, 685, 1394, 1633, 1855, 2128
BaeGI	GKGCMC	2 cut(s)	254, 767
BalI	TGGCCA	2 cut(s)	654, 1280
BanI	GGYRCC	1 cut(s)	762
BanII	GRGCYC	6 cut(s)	332, 537, 668, 1170, 1371, 1531
BbrPI	CACGTG	1 cut(s)	1298
BbsI	GAAGAC	4 cut(s)	278, 412, 466, 945
Bbv12I	GWGCWC	8 cut(s)	332, 537, 1143, 1170, 1371, 1821, 1838, 2352
BbvI	GCAGC	3 cut(s)	565, 568, 2146
BceAI	ACGGC	6 cut(s)	569, 602, 608, 1071, 1816, 2217
BcgI	CGANNNNNNTGC	8 cut(s)	352, 386, 391, 425, 581, 615, 1202, 1236
BciT130I	CCWGG	1 cut(s)	632
BclI	TGATCA	2 cut(s)	102, 1759
BcnI	CCSGG	2 cut(s)	832, 1991
BcoDI	GTCTC	5 cut(s)	557, 1296, 1892, 2367, 2410
BfaI	CTAG	4 cut(s)	1229, 2150, 2219, 2229
BfmI	CTRYAG	2 cut(s)	1609, 2160
BfoI	RGCGCY	1 cut(s)	1501
BfuAI	ACCTGC	2 cut(s)	626, 745
BglI	GCCNNNNNGGC	3 cut(s)	345, 575, 710
BlpI	GCTNAGC	1 cut(s)	2355
Bme1390I	CCNGG	3 cut(s)	632, 832, 1991
Bme18I	GGWCC	6 cut(s)	194, 685, 1394, 1633, 1855, 2128
BmeRI	GACNNNNNGTC	1 cut(s)	946
BmeT110I	CYCGRG	3 cut(s)	1076, 1566, 1889
BmiI	GGNNCC	4 cut(s)	686, 764, 2306, 2364
BmrFI	CCNGG	3 cut(s)	632, 832, 1991
BmsI	GCATC	4 cut(s)	38, 411, 531, 986
BpiI	GAAGAC	4 cut(s)	278, 412, 466, 945
BplI	GAGNNNNNCTC	4 cut(s)	319, 351, 474, 506
BpmI	CTGGAG	4 cut(s)	2057, 2261, 2442, 2497
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	2355
Bpu14I	TTCGAA	1 cut(s)	1438
BpuMI	CCSGG	2 cut(s)	832, 1991
BsaAI	YACGTR	2 cut(s)	1013, 1298
BsaBI	GATNNNNATC	2 cut(s)	925, 2277
BsaHI	GRCGYC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	2410
BsaJI	CCNNGG	9 cut(s)	124, 570, 618, 624, 630, 1053, 1858, 1959, 2395
BsaWI	WCCGGW	3 cut(s)	769, 815, 1267
BsaXI	ACNNNNNCTCC	6 cut(s)	314, 344, 810, 840, 2234, 2264
Bsc4I	CCNNNNNNNGG	8 cut(s)	248, 747, 1298, 1630, 1693, 1993, 2344, 2401
Bse118I	RCCGGY	3 cut(s)	374, 759, 1291
Bse1I	ACTGG	3 cut(s)	2459, 2514, 2526
Bse3DI	GCAATG	4 cut(s)	162, 1101, 1745, 1795
Bse8I	GATNNNNATC	2 cut(s)	925, 2277
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	9 cut(s)	124, 570, 618, 624, 630, 1053, 1858, 1959, 2395
BseGI	GGATG	2 cut(s)	1983, 2200
BseJI	GATNNNNATC	2 cut(s)	925, 2277
BseLI	CCNNNNNNNGG	8 cut(s)	248, 747, 1298, 1630, 1693, 1993, 2344, 2401
BseMI	GCAATG	4 cut(s)	162, 1101, 1745, 1795
BseMII	CTCAG	6 cut(s)	317, 476, 566, 2160, 2205, 2346
BseNI	ACTGG	3 cut(s)	2459, 2514, 2526
BseSI	GKGCMC	2 cut(s)	254, 767
BseXI	GCAGC	3 cut(s)	565, 568, 2146
BseYI	CCCAGC	3 cut(s)	1064, 1592, 2359
BshNI	GGYRCC	1 cut(s)	762
BsiHKAI	GWGCWC	8 cut(s)	332, 537, 1143, 1170, 1371, 1821, 1838, 2352
BsiHKCI	CYCGRG	3 cut(s)	1076, 1566, 1889
BslFI	GGGAC	2 cut(s)	1093, 2212
BslI	CCNNNNNNNGG	8 cut(s)	248, 747, 1298, 1630, 1693, 1993, 2344, 2401
BsmAI	GTCTC	5 cut(s)	557, 1296, 1892, 2367, 2410
BsmFI	GGGAC	2 cut(s)	1093, 2212
BsmI	GAATGC	1 cut(s)	1598
Bso31I	GGTCTC	1 cut(s)	2410
BsoBI	CYCGRG	3 cut(s)	1076, 1566, 1889
Bsp119I	TTCGAA	1 cut(s)	1438
Bsp143I	GATC	9 cut(s)	102, 606, 729, 1348, 1716, 1759, 1948, 2272, 2278
Bsp1720I	GCTNAGC	1 cut(s)	2355
Bsp19I	CCATGG	2 cut(s)	570, 2395
BspCNI	CTCAG	6 cut(s)	318, 475, 565, 2161, 2206, 2347
BspHI	TCATGA	4 cut(s)	717, 837, 1143, 1762
BspLI	GGNNCC	4 cut(s)	686, 764, 2306, 2364
BspMAI	CTGCAG	1 cut(s)	2164
BspMI	ACCTGC	2 cut(s)	626, 745
BspPI	GGATC	4 cut(s)	614, 724, 1343, 2286
BspQI	GCTCTTC	1 cut(s)	1507
BspT104I	TTCGAA	1 cut(s)	1438
BspT107I	GGYRCC	1 cut(s)	762
BspTNI	GGTCTC	1 cut(s)	2410
BsrDI	GCAATG	4 cut(s)	162, 1101, 1745, 1795
BsrFI	RCCGGY	3 cut(s)	374, 759, 1291
BsrI	ACTGG	3 cut(s)	2459, 2514, 2526
BssAI	RCCGGY	3 cut(s)	374, 759, 1291
BssECI	CCNNGG	9 cut(s)	124, 570, 618, 624, 630, 1053, 1858, 1959, 2395
BssMI	GATC	9 cut(s)	102, 606, 729, 1348, 1716, 1759, 1948, 2272, 2278
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	4 cut(s)	124, 570, 1959, 2395
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	7 cut(s)	644, 909, 1322, 1633, 1859, 2102, 2304
Bst6I	CTCTTC	3 cut(s)	1250, 1507, 1697
BstACI	GRCGYC	1 cut(s)	408
BstAPI	GCANNNNNTGC	1 cut(s)	1201
BstBAI	YACGTR	2 cut(s)	1013, 1298
BstBI	TTCGAA	1 cut(s)	1438
BstC8I	GCNNGC	7 cut(s)	376, 516, 520, 615, 757, 1060, 2352
BstDEI	CTNAG	8 cut(s)	313, 326, 462, 526, 552, 2169, 2214, 2355
BstDSI	CCRYGG	6 cut(s)	570, 618, 624, 1053, 1858, 2395
BstF5I	GGATG	2 cut(s)	1983, 2200
BstH2I	RGCGCY	1 cut(s)	1501
BstHHI	GCGC	3 cut(s)	1064, 1500, 1831
BstKTI	GATC	9 cut(s)	105, 609, 732, 1351, 1719, 1762, 1951, 2275, 2281
BstMAI	GTCTC	5 cut(s)	557, 1296, 1892, 2367, 2410
BstMBI	GATC	9 cut(s)	102, 606, 729, 1348, 1716, 1759, 1948, 2272, 2278
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	2 cut(s)	1266, 1386
BstSCI	CCNGG	3 cut(s)	630, 830, 1989
BstSFI	CTRYAG	2 cut(s)	1609, 2160
BstSLI	GKGCMC	2 cut(s)	254, 767
BstV1I	GCAGC	3 cut(s)	565, 568, 2146
BstV2I	GAAGAC	4 cut(s)	278, 412, 466, 945
BstX2I	RGATCY	2 cut(s)	606, 2278
BstXI	CCANNNNNNTGG	1 cut(s)	2521
BstYI	RGATCY	2 cut(s)	606, 2278
BtgI	CCRYGG	6 cut(s)	570, 618, 624, 1053, 1858, 2395
BtgZI	GCGATG	1 cut(s)	1727
BtsCI	GGATG	2 cut(s)	1983, 2200
BtsI	GCAGTG	3 cut(s)	1851, 2169, 2272
BtsIMutI	CAGTG	7 cut(s)	276, 1851, 2169, 2211, 2272, 2466, 2521
BveI	ACCTGC	2 cut(s)	626, 745
Cac8I	GCNNGC	7 cut(s)	376, 516, 520, 615, 757, 1060, 2352
CaiI	CAGNNNCTG	1 cut(s)	2168
CciI	TCATGA	4 cut(s)	717, 837, 1143, 1762
CfoI	GCGC	3 cut(s)	1064, 1500, 1831
Cfr10I	RCCGGY	3 cut(s)	374, 759, 1291
CpoI	CGGWCCG	1 cut(s)	1633
CseI	GACGC	2 cut(s)	397, 1138
Csp6I	GTAC	2 cut(s)	2209, 2519
CspI	CGGWCCG	1 cut(s)	1633
CviQI	GTAC	2 cut(s)	2209, 2519
DdeI	CTNAG	8 cut(s)	313, 326, 462, 526, 552, 2169, 2214, 2355
DpnI	GATC	9 cut(s)	104, 608, 731, 1350, 1718, 1761, 1950, 2274, 2280
DpnII	GATC	9 cut(s)	102, 606, 729, 1348, 1716, 1759, 1948, 2272, 2278
DraI	TTTAAA	1 cut(s)	63
DriI	GACNNNNNGTC	1 cut(s)	946
EaeI	YGGCCR	7 cut(s)	615, 621, 652, 828, 1113, 1278, 2392
Eam1104I	CTCTTC	3 cut(s)	1250, 1507, 1697
Eam1105I	GACNNNNNGTC	1 cut(s)	946
EarI	CTCTTC	3 cut(s)	1250, 1507, 1697
EciI	GGCGGA	1 cut(s)	1709
Ecl136II	GAGCTC	4 cut(s)	330, 535, 1168, 1369
Eco130I	CCWWGG	4 cut(s)	124, 570, 1959, 2395
Eco147I	AGGCCT	1 cut(s)	1958
Eco24I	GRGCYC	6 cut(s)	332, 537, 668, 1170, 1371, 1531
Eco31I	GGTCTC	1 cut(s)	2410
Eco32I	GATATC	1 cut(s)	675
Eco47I	GGWCC	6 cut(s)	194, 685, 1394, 1633, 1855, 2128
Eco47III	AGCGCT	1 cut(s)	1499
Eco53kI	GAGCTC	4 cut(s)	330, 535, 1168, 1369
Eco57I	CTGAAG	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	1298
Eco88I	CYCGRG	3 cut(s)	1076, 1566, 1889
EcoICRI	GAGCTC	4 cut(s)	330, 535, 1168, 1369
EcoO109I	RGGNCCY	2 cut(s)	685, 2363
EcoRI	GAATTC	3 cut(s)	183, 855, 1374
EcoRII	CCWGG	1 cut(s)	630
EcoRV	GATATC	1 cut(s)	675
EcoT14I	CCWWGG	4 cut(s)	124, 570, 1959, 2395
EcoT38I	GRGCYC	6 cut(s)	332, 537, 668, 1170, 1371, 1531
ErhI	CCWWGG	4 cut(s)	124, 570, 1959, 2395
FaqI	GGGAC	2 cut(s)	1093, 2212
FauI	CCCGC	1 cut(s)	527
FbaI	TGATCA	2 cut(s)	102, 1759
FblI	GTMKAC	1 cut(s)	321
FokI	GGATG	2 cut(s)	1990, 2207
FriOI	GRGCYC	6 cut(s)	332, 537, 668, 1170, 1371, 1531
FspBI	CTAG	4 cut(s)	1229, 2150, 2219, 2229
GlaI	GCGC	3 cut(s)	1063, 1499, 1830
GsaI	CCCAGC	3 cut(s)	1068, 1596, 2363
GsuI	CTGGAG	4 cut(s)	2057, 2261, 2442, 2497
HaeII	RGCGCY	1 cut(s)	1501
HgaI	GACGC	2 cut(s)	397, 1138
HhaI	GCGC	3 cut(s)	1064, 1500, 1831
Hin1I	GRCGYC	1 cut(s)	408
Hin6I	GCGC	3 cut(s)	1062, 1498, 1829
HinP1I	GCGC	3 cut(s)	1062, 1498, 1829
HincII	GTYRAC	3 cut(s)	322, 589, 1807
HindII	GTYRAC	3 cut(s)	322, 589, 1807
HindIII	AAGCTT	1 cut(s)	1420
Hpy99I	CGWCG	5 cut(s)	113, 413, 596, 1560, 2024
HpyCH4III	ACNGT	7 cut(s)	644, 909, 1322, 1633, 1859, 2102, 2304
HpyCH4IV	ACGT	5 cut(s)	594, 1012, 1082, 1297, 2436
HpyF3I	CTNAG	8 cut(s)	313, 326, 462, 526, 552, 2169, 2214, 2355
HpySE526I	ACGT	5 cut(s)	594, 1012, 1082, 1297, 2436
Hsp92I	GRCGYC	1 cut(s)	408
HspAI	GCGC	3 cut(s)	1062, 1498, 1829
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Ksp22I	TGATCA	2 cut(s)	102, 1759
Kzo9I	GATC	9 cut(s)	102, 606, 729, 1348, 1716, 1759, 1948, 2272, 2278
LguI	GCTCTTC	1 cut(s)	1507
Lsp1109I	GCAGC	3 cut(s)	565, 568, 2146
LweI	GCATC	4 cut(s)	38, 411, 531, 986
MaeI	CTAG	4 cut(s)	1229, 2150, 2219, 2229
MaeII	ACGT	5 cut(s)	594, 1012, 1082, 1297, 2436
MaeIII	GTNAC	3 cut(s)	638, 1331, 1627
MalI	GATC	9 cut(s)	104, 608, 731, 1350, 1718, 1761, 1950, 2274, 2280
MboI	GATC	9 cut(s)	102, 606, 729, 1348, 1716, 1759, 1948, 2272, 2278
MfeI	CAATTG	4 cut(s)	432, 1509, 1616, 2256
MflI	RGATCY	2 cut(s)	606, 2278
MlsI	TGGCCA	2 cut(s)	654, 1280
MluNI	TGGCCA	2 cut(s)	654, 1280
MlyI	GAGTC	5 cut(s)	882, 1130, 1223, 1298, 1635
MmeI	TCCRAC	3 cut(s)	757, 1955, 2350
Mox20I	TGGCCA	2 cut(s)	654, 1280
MroNI	GCCGGC	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	859
MscI	TGGCCA	2 cut(s)	654, 1280
MseI	TTAA	8 cut(s)	62, 545, 806, 812, 923, 1424, 1998, 2069
Msp20I	TGGCCA	2 cut(s)	654, 1280
MspA1I	CMGCKG	1 cut(s)	1346
MspR9I	CCNGG	3 cut(s)	632, 832, 1991
MunI	CAATTG	4 cut(s)	432, 1509, 1616, 2256
Mva1269I	GAATGC	1 cut(s)	1598
MvaI	CCWGG	1 cut(s)	632
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	2 cut(s)	832, 1991
NcoI	CCATGG	2 cut(s)	570, 2395
NdeII	GATC	9 cut(s)	102, 606, 729, 1348, 1716, 1759, 1948, 2272, 2278
NgoMIV	GCCGGC	1 cut(s)	374
NlaIV	GGNNCC	4 cut(s)	686, 764, 2306, 2364
NmeAIII	GCCGAG	1 cut(s)	1649
NmuCI	GTSAC	3 cut(s)	638, 1331, 1627
NspI	RCATGY	2 cut(s)	1266, 1386
NspV	TTCGAA	1 cut(s)	1438
PaeR7I	CTCGAG	2 cut(s)	1566, 1889
PagI	TCATGA	4 cut(s)	717, 837, 1143, 1762
PaqCI	CACCTGC	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	1958
PciI	ACATGT	1 cut(s)	1262
PciSI	GCTCTTC	1 cut(s)	1507
PcsI	WCGNNNNNNNCGW	2 cut(s)	1318, 1564
PctI	GAATGC	1 cut(s)	1598
PdiI	GCCGGC	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	859
PfeI	GAWTC	6 cut(s)	266, 1072, 1108, 1430, 2422, 2507
PflMI	CCANNNNNTGG	2 cut(s)	747, 2401
PleI	GAGTC	5 cut(s)	882, 1129, 1222, 1298, 1634
PmaCI	CACGTG	1 cut(s)	1298
PmlI	CACGTG	1 cut(s)	1298
PpsI	GAGTC	5 cut(s)	882, 1129, 1222, 1298, 1634
Ppu21I	YACGTR	2 cut(s)	1013, 1298
PpuMI	RGGWCCY	1 cut(s)	685
PscI	ACATGT	1 cut(s)	1262
PshBI	ATTAAT	1 cut(s)	923
PsiI	TTATAA	1 cut(s)	1049
Psp124BI	GAGCTC	4 cut(s)	332, 537, 1170, 1371
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	630
PspCI	CACGTG	1 cut(s)	1298
PspFI	CCCAGC	3 cut(s)	1064, 1592, 2359
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	4 cut(s)	686, 764, 2306, 2364
PspPPI	RGGWCCY	1 cut(s)	685
PspXI	VCTCGAGB	1 cut(s)	1566
PstI	CTGCAG	1 cut(s)	2164
PstNI	CAGNNNCTG	1 cut(s)	2168
PsuI	RGATCY	2 cut(s)	606, 2278
PvuII	CAGCTG	1 cut(s)	1346
RsaI	GTAC	2 cut(s)	2210, 2520
RsaNI	GTAC	2 cut(s)	2209, 2519
Rsr2I	CGGWCCG	1 cut(s)	1633
RsrII	CGGWCCG	1 cut(s)	1633
SacI	GAGCTC	4 cut(s)	332, 537, 1170, 1371
SalI	GTCGAC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	1507
SaqAI	TTAA	8 cut(s)	62, 545, 806, 812, 923, 1424, 1998, 2069
Sau3AI	GATC	9 cut(s)	102, 606, 729, 1348, 1716, 1759, 1948, 2272, 2278
SchI	GAGTC	5 cut(s)	882, 1130, 1223, 1298, 1635
ScrFI	CCNGG	3 cut(s)	632, 832, 1991
SfaNI	GCATC	4 cut(s)	38, 411, 531, 986
SfcI	CTRYAG	2 cut(s)	1609, 2160
Sfr274I	CTCGAG	2 cut(s)	1566, 1889
SfuI	TTCGAA	1 cut(s)	1438
SinI	GGWCC	6 cut(s)	194, 685, 1394, 1633, 1855, 2128
SlaI	CTCGAG	2 cut(s)	1566, 1889
SmlI	CTYRAG	2 cut(s)	1566, 1889
SmoI	CTYRAG	2 cut(s)	1566, 1889
SseBI	AGGCCT	1 cut(s)	1958
SspI	AATATT	2 cut(s)	261, 2236
SspMI	CTAG	4 cut(s)	1229, 2150, 2219, 2229
SstI	GAGCTC	4 cut(s)	332, 537, 1170, 1371
StuI	AGGCCT	1 cut(s)	1958
StyD4I	CCNGG	3 cut(s)	630, 830, 1989
StyI	CCWWGG	4 cut(s)	124, 570, 1959, 2395
TaaI	ACNGT	7 cut(s)	644, 909, 1322, 1633, 1859, 2102, 2304
TaiI	ACGT	5 cut(s)	597, 1015, 1085, 1300, 2439
TaqI	TCGA	9 cut(s)	321, 929, 1438, 1531, 1558, 1567, 1890, 1951, 2022
TaqII	GACCGA	2 cut(s)	2145, 2352
TatI	WGTACW	2 cut(s)	2208, 2518
TauI	GCSGC	7 cut(s)	120, 402, 578, 1020, 1358, 1694, 1712
TfiI	GAWTC	6 cut(s)	266, 1072, 1108, 1430, 2422, 2507
Tru1I	TTAA	8 cut(s)	62, 545, 806, 812, 923, 1424, 1998, 2069
Tru9I	TTAA	8 cut(s)	62, 545, 806, 812, 923, 1424, 1998, 2069
TscAI	CASTG	7 cut(s)	276, 1851, 2169, 2218, 2272, 2466, 2521
TseFI	GTSAC	3 cut(s)	638, 1331, 1627
TseI	GCWGC	3 cut(s)	578, 581, 2159
Tsp45I	GTSAC	3 cut(s)	638, 1331, 1627
TspGWI	ACGGA	1 cut(s)	1930
TspRI	CASTG	7 cut(s)	276, 1851, 2169, 2218, 2272, 2466, 2521
Van91I	CCANNNNNTGG	2 cut(s)	747, 2401
VpaK11BI	GGWCC	6 cut(s)	194, 685, 1394, 1633, 1855, 2128
VspI	ATTAAT	1 cut(s)	923
XapI	RAATTY	3 cut(s)	183, 855, 1374
XceI	RCATGY	2 cut(s)	1266, 1386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2122
XhoI	CTCGAG	2 cut(s)	1566, 1889
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	859
XspI	CTAG	4 cut(s)	1229, 2150, 2219, 2229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.