Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Forward (+)

13151952 .. 13160875

Gene Structure 8924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG154600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGCTGCAGCAGCCTTCAACGACGTGGCTGCATGGATTCTGCTGGCCTTGGCCGTGGCCTTAGCAGGTGGGAACCTTAAAGGCCCTCTAGTCTCCATTTGGGTTCTCATTTCCGGCGTGGCTTTTGTTGCTTTTATGTTCATTCTGGTCCGTCCTTTGATGACTTGGGTTGCTAACCGCTGCTCATCTCAAATGGAGGACGAAGCTTATCTATGCTTCACCCTAGCCGGGGTCATGTTGTCCGGGTTCATGACTGACCTAATCGGTGTCCATGCCATCTTTGGGGCATTTATTTTTGGATTAACCATTCCGAAAGGGGGTGAATTTGCAGCCAAACTGACTAAAAGGATCGAGGATTTTGTGTCTGGTTTGCTTCTCCCTCTCTACTTTGCCTCGAGTGGTTTGAAGACTGACGTTACTAAAATACGTGGGATCAAGGCATGGGGTCTTTTGGCTTTGGTTATATCAGTTTCTTGCACTGGAAAAATTTTGGGAACGTTTTTGGTTGCAATGATGAGTATGATACCAGTGAGGGAGTCATTAGCTCTAGGTGTACTGATGAATACTAAAGGATTGGTGGAGCTTGTTGTTCTGAATATTGGCAAGGAGAAAAAGCTCTCGTCGAACTTGCTTAATTTACAGATTCTAAACGACGAGATGTTTGCTATTTTTGTGCTGATGGCACTTTTCACCACCTTCATGACGACACCAATAGTGATGGCCATTTACAAACCCTATGTCGTTGCTTCCCAATCTGAGAGTAGTTTAGAGAGACAGAATTCTCCCAGCAAGAACCCGAAGAAAAAGAAGGAACTTCTAATCCTTGCTTGTATTCATGGACCGGGAAGTGTACCCTCCCTTATCAACCTCATTGAGTCGACCGGAACCTCCTCCGAGAATTCTCTTCTCAAAGTTTACGTGATGCATCTTGTTGAACTTACTGATCGTTCATCCTCCATTATGATGGTACACAAAGTTCGGAAAAACGGCTTGCCCTTCATCAACCGCTTTTGTCTAGGGGTGGCACGCCATATCGCCTCAGCATTTGAAGCTTATAGTCAAGTTGGTCAAGTCACCATCCTTCACACAACAGCCATCTCGGCTTTGCCTACGATGTACGAGGATATTCTCCATGTTGCGGAAGCCAAGACGGTGTCCATCATTATCTTGCCTTTCAACAAACAGGGGAATAAACAGGGTGAAGAGACGATGGATAATTTAGAGCATCGCTGGAGAGCAGTCAATGAGAGAGTTCTAAAATGTGCTAATTGCTCAGTAGCATTGTTCGTGGATCGTGGACTCGGTGTTGGAGCTGGGAAGGGTGCAAAGACTACCAATCTGAAGAGGGTGTGCATTCTATTCTTGGGTGGAACCGATGACCGCAGGGCACTGCAGTATGTTGCGGGAATTGCAAATCAGAGCGTTGTAGTTACCGTTGTGAGGTGTTTTGAGCACAGCATTACTCCTCCAAGCTCCATCACCAACCCCGACAGGGATCTTGATGAGACTGCAGTGGCAGAGTTTCGAAGGCAGAATGGGTCGGTGGAATTCATAGAGAAGGTGGTAGTCGGCAACATTATAGAAACGGTGGCGGGCATAGTTCAGGGCAGGGAATACAACCTGGTGATCGTGGGGAAGCAGCACCACCCTTCAACAATTGTTGCAGAATTGGCTCACAATCAGCTGGAGCATACCGAACTGGGACCAATTGGAGACGCATTAGCTTCATCCTCACATGGGATTTCGTGCTCCGTGCTTGTGATACAAACACCACAGATTAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

595

Amino Acids

64.41

Weight (kDa)

8.68

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	2 - 239	7.7e-33	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	303 - 443	9.6e-31	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	450 - 590	1.6e-10	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	878
AciI	CCGC	6 cut(s)	178, 1006, 1139, 1381, 1403, 1592
AclI	AACGTT	1 cut(s)	497
AclWI	GGATC	4 cut(s)	356, 440, 1299, 1503
AcoI	YGGCCR	2 cut(s)	51, 720
AcsI	RAATTY	5 cut(s)	323, 486, 778, 898, 1547
AcuI	CTGAAG	1 cut(s)	1361
AfaI	GTAC	4 cut(s)	555, 852, 969, 1118
AfiI	CCNNNNNNNGG	8 cut(s)	228, 229, 282, 317, 1138, 1440, 1492, 1737
AgsI	TTSAA	6 cut(s)	19, 406, 935, 1049, 1177, 1653
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	1620
AloI	GAACNNNNNNTCC	2 cut(s)	804, 836
AluBI	AGCT	9 cut(s)	206, 545, 583, 616, 1052, 1313, 1473, 1684, 1724
AluI	AGCT	9 cut(s)	206, 545, 583, 616, 1052, 1313, 1473, 1684, 1724
Alw21I	GWGCWC	2 cut(s)	1455, 1751
Alw26I	GTCTC	5 cut(s)	97, 766, 1199, 1499, 1707
AlwI	GGATC	4 cut(s)	356, 440, 1299, 1503
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	5 cut(s)	45, 51, 57, 82, 720
ApeKI	GCWGC	7 cut(s)	5, 8, 11, 29, 180, 329, 1639
ApoI	RAATTY	5 cut(s)	323, 486, 778, 898, 1547
ArsI	GACNNNNNNTTYG	4 cut(s)	644, 676, 723, 755
AspS9I	GGNCC	4 cut(s)	83, 148, 839, 1703
AsuC2I	CCSGG	3 cut(s)	229, 244, 843
AsuHPI	GGTGA	7 cut(s)	211, 332, 682, 1066, 1211, 1471, 1636
AsuII	TTCGAA	1 cut(s)	1525
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	3 cut(s)	148, 839, 1703
BaeGI	GKGCMC	1 cut(s)	1390
BalI	TGGCCA	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	2 cut(s)	1455, 1751
BbvCI	CCTCAGC	1 cut(s)	1039
BbvI	GCAGC	6 cut(s)	16, 20, 23, 167, 341, 1651
BccI	CCATC	9 cut(s)	284, 673, 712, 958, 1085, 1103, 1166, 1204, 1484
BceAI	ACGGC	2 cut(s)	38, 1003
BcgI	CGANNNNNNTGC	4 cut(s)	11, 45, 644, 678
BciT130I	CCWGG	1 cut(s)	1622
BcnI	CCSGG	3 cut(s)	229, 244, 843
BcoDI	GTCTC	5 cut(s)	97, 766, 1199, 1499, 1707
BfaI	CTAG	4 cut(s)	89, 224, 548, 1016
BfmI	CTRYAG	3 cut(s)	6, 1391, 1509
BfuAI	ACCTGC	1 cut(s)	56
BglI	GCCNNNNNGGC	1 cut(s)	1100
BisI	GCNGC	7 cut(s)	6, 9, 12, 30, 181, 330, 1640
BlsI	GCNGC	7 cut(s)	7, 10, 13, 31, 182, 331, 1641
Bme1390I	CCNGG	4 cut(s)	229, 244, 843, 1622
Bme18I	GGWCC	3 cut(s)	148, 839, 1703
BmeT110I	CYCGRG	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	4 cut(s)	83, 148, 839, 1703
BmiI	GGNNCC	4 cut(s)	74, 886, 1372, 1704
BmrFI	CCNGG	4 cut(s)	229, 244, 843, 1622
BmrI	ACTGGG	1 cut(s)	1709
BmsI	GCATC	3 cut(s)	912, 934, 1234
BmuI	ACTGGG	1 cut(s)	1709
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	2 cut(s)	1252, 1706
Bpu10I	CCTNAGC	2 cut(s)	61, 1039
Bpu14I	TTCGAA	1 cut(s)	1525
BpuMI	CCSGG	3 cut(s)	229, 244, 843
BsaAI	YACGTR	2 cut(s)	428, 919
BsaJI	CCNNGG	3 cut(s)	48, 54, 228
BsaWI	WCCGGW	1 cut(s)	881
Bsc4I	CCNNNNNNNGG	8 cut(s)	228, 229, 282, 317, 1138, 1440, 1492, 1737
Bse1I	ACTGG	3 cut(s)	484, 527, 1704
Bse3DI	GCAATG	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	1622
BseDI	CCNNGG	3 cut(s)	48, 54, 228
BseGI	GGATG	3 cut(s)	950, 1077, 1727
BseLI	CCNNNNNNNGG	8 cut(s)	228, 229, 282, 317, 1138, 1440, 1492, 1737
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	747, 1053, 1287
BseNI	ACTGG	3 cut(s)	484, 527, 1704
BseRI	GAGGAG	2 cut(s)	880, 1455
BseSI	GKGCMC	1 cut(s)	1390
BseXI	GCAGC	6 cut(s)	16, 20, 23, 167, 341, 1651
BseYI	CCCAGC	2 cut(s)	785, 1313
Bsh1285I	CGRYCG	1 cut(s)	882
BshFI	GGCC	5 cut(s)	47, 53, 59, 84, 722
BsiEI	CGRYCG	1 cut(s)	882
BsiHKAI	GWGCWC	2 cut(s)	1455, 1751
BsiHKCI	CYCGRG	1 cut(s)	394
BsiSI	CCGG	5 cut(s)	114, 228, 243, 842, 882
BslFI	GGGAC	1 cut(s)	1716
BslI	CCNNNNNNNGG	8 cut(s)	228, 229, 282, 317, 1138, 1440, 1492, 1737
BsmAI	GTCTC	5 cut(s)	97, 766, 1199, 1499, 1707
BsmBI	CGTCTC	2 cut(s)	1199, 1707
BsmFI	GGGAC	1 cut(s)	1716
BsmI	GAATGC	1 cut(s)	1353
BsnI	GGCC	5 cut(s)	47, 53, 59, 84, 722
BsoBI	CYCGRG	1 cut(s)	394
Bsp119I	TTCGAA	1 cut(s)	1525
Bsp1286I	GDGCHC	3 cut(s)	1390, 1455, 1751
Bsp143I	GATC	6 cut(s)	348, 432, 943, 1291, 1495, 1626
BspACI	CCGC	6 cut(s)	178, 1006, 1139, 1381, 1403, 1592
BspANI	GGCC	5 cut(s)	47, 53, 59, 84, 722
BspCNI	CTCAG	3 cut(s)	748, 1052, 1286
BspHI	TCATGA	2 cut(s)	249, 699
BspLI	GGNNCC	4 cut(s)	74, 886, 1372, 1704
BspMAI	CTGCAG	3 cut(s)	10, 1395, 1513
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	4 cut(s)	356, 440, 1299, 1503
BspT104I	TTCGAA	1 cut(s)	1525
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	484, 527, 1704
BssECI	CCNNGG	3 cut(s)	48, 54, 228
BssMI	GATC	6 cut(s)	348, 432, 943, 1291, 1495, 1626
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	1622
Bst4CI	ACNGT	3 cut(s)	1153, 1435, 1588
Bst6I	CTCTTC	3 cut(s)	909, 1197, 1337
BstBAI	YACGTR	2 cut(s)	428, 919
BstBI	TTCGAA	1 cut(s)	1525
BstC8I	GCNNGC	4 cut(s)	45, 992, 1027, 1594
BstDEI	CTNAG	4 cut(s)	61, 756, 1039, 1273
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	950, 1077, 1727
BstKTI	GATC	6 cut(s)	351, 435, 946, 1294, 1498, 1629
BstMAI	GTCTC	5 cut(s)	97, 766, 1199, 1499, 1707
BstMBI	GATC	6 cut(s)	348, 432, 943, 1291, 1495, 1626
BstMCI	CGRYCG	1 cut(s)	882
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 128, 1049, 1100, 1409, 1670
BstNI	CCWGG	1 cut(s)	1622
BstSCI	CCNGG	4 cut(s)	227, 242, 841, 1620
BstSFI	CTRYAG	3 cut(s)	6, 1391, 1509
BstSLI	GKGCMC	1 cut(s)	1390
BstV1I	GCAGC	6 cut(s)	16, 20, 23, 167, 341, 1651
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	1 cut(s)	1495
BstXI	CCANNNNNNTGG	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	1495
BsuRI	GGCC	5 cut(s)	47, 53, 59, 84, 722
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	1211
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	950, 1077, 1727
BtsI	GCAGTG	2 cut(s)	1388, 1518
BtsIMutI	CAGTG	4 cut(s)	477, 534, 1388, 1518
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	4 cut(s)	45, 992, 1027, 1594
CciI	TCATGA	2 cut(s)	249, 699
Cfr13I	GGNCC	4 cut(s)	83, 148, 839, 1703
CseI	GACGC	1 cut(s)	1724
CsiI	ACCWGGT	1 cut(s)	1620
Csp6I	GTAC	4 cut(s)	554, 851, 968, 1117
CviAII	CATG	9 cut(s)	33, 235, 250, 272, 441, 700, 836, 1133, 1736
CviQI	GTAC	4 cut(s)	554, 851, 968, 1117
DdeI	CTNAG	4 cut(s)	61, 756, 1039, 1273
DpnI	GATC	6 cut(s)	350, 434, 945, 1293, 1497, 1628
DpnII	GATC	6 cut(s)	348, 432, 943, 1291, 1495, 1626
EaeI	YGGCCR	2 cut(s)	51, 720
Eam1104I	CTCTTC	3 cut(s)	909, 1197, 1337
EarI	CTCTTC	3 cut(s)	909, 1197, 1337
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	3 cut(s)	148, 839, 1703
Eco57I	CTGAAG	1 cut(s)	1361
Eco88I	CYCGRG	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRI	GAATTC	3 cut(s)	778, 898, 1547
EcoRII	CCWGG	1 cut(s)	1620
EcoT14I	CCWWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	48
Esp3I	CGTCTC	2 cut(s)	1199, 1707
FaeI	CATG	9 cut(s)	36, 238, 253, 275, 444, 703, 839, 1136, 1739
FaqI	GGGAC	1 cut(s)	1716
FatI	CATG	9 cut(s)	32, 234, 249, 271, 440, 699, 835, 1132, 1735
FauI	CCCGC	2 cut(s)	1396, 1585
FblI	GTMKAC	1 cut(s)	878
Fnu4HI	GCNGC	7 cut(s)	6, 9, 12, 30, 181, 330, 1640
FokI	GGATG	3 cut(s)	937, 1064, 1714
Fsp4HI	GCNGC	7 cut(s)	6, 9, 12, 30, 181, 330, 1640
FspBI	CTAG	4 cut(s)	89, 224, 548, 1016
GluI	GCNGC	7 cut(s)	6, 9, 12, 30, 181, 330, 1640
GsaI	CCCAGC	2 cut(s)	789, 1317
GsuI	CTGGAG	2 cut(s)	1252, 1706
HaeIII	GGCC	5 cut(s)	47, 53, 59, 84, 722
HapII	CCGG	5 cut(s)	114, 228, 243, 842, 882
HgaI	GACGC	1 cut(s)	1724
Hin1II	CATG	9 cut(s)	36, 238, 253, 275, 444, 703, 839, 1136, 1739
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	2 cut(s)	204, 1050
HinfI	GANTC	5 cut(s)	37, 536, 643, 875, 1299
HpaII	CCGG	5 cut(s)	114, 228, 243, 842, 882
HphI	GGTGA	7 cut(s)	211, 332, 682, 1066, 1211, 1471, 1636
Hpy166II	GTNNAC	6 cut(s)	554, 851, 879, 916, 970, 1298
Hpy188I	TCNGA	7 cut(s)	312, 594, 757, 895, 981, 1341, 1419
Hpy188III	TCNNGA	3 cut(s)	250, 700, 1499
Hpy8I	GTNNAC	6 cut(s)	554, 851, 879, 916, 970, 1298
Hpy99I	CGWCG	3 cut(s)	26, 625, 656
HpyAV	CCTTC	9 cut(s)	25, 706, 802, 1006, 1091, 1312, 1521, 1552, 1659
HpyCH4III	ACNGT	3 cut(s)	1153, 1435, 1588
HpyCH4IV	ACGT	5 cut(s)	24, 414, 427, 497, 918
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 128, 1049, 1100, 1409, 1670
HpyF3I	CTNAG	4 cut(s)	61, 756, 1039, 1273
HpySE526I	ACGT	5 cut(s)	24, 414, 427, 497, 918
Hsp92II	CATG	9 cut(s)	36, 238, 253, 275, 444, 703, 839, 1136, 1739
Kzo9I	GATC	6 cut(s)	348, 432, 943, 1291, 1495, 1626
LmnI	GCTCC	5 cut(s)	580, 1310, 1478, 1687, 1754
Lsp1109I	GCAGC	6 cut(s)	16, 20, 23, 167, 341, 1651
LweI	GCATC	3 cut(s)	912, 934, 1234
MabI	ACCWGGT	1 cut(s)	1620
MaeI	CTAG	4 cut(s)	89, 224, 548, 1016
MaeII	ACGT	5 cut(s)	24, 414, 427, 497, 918
MaeIII	GTNAC	3 cut(s)	415, 1072, 1429
MalI	GATC	6 cut(s)	350, 434, 945, 1293, 1497, 1628
MboI	GATC	6 cut(s)	348, 432, 943, 1291, 1495, 1626
MboII	GAAGA	5 cut(s)	418, 811, 896, 1214, 1354
MfeI	CAATTG	2 cut(s)	1656, 1707
MflI	RGATCY	1 cut(s)	1495
MhlI	GDGCHC	3 cut(s)	1390, 1455, 1751
MlsI	TGGCCA	1 cut(s)	722
MluNI	TGGCCA	1 cut(s)	722
MlyI	GAGTC	3 cut(s)	545, 884, 1293
MmeI	TCCRAC	1 cut(s)	1288
Mox20I	TGGCCA	1 cut(s)	722
Mph1103I	ATGCAT	1 cut(s)	927
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	3 cut(s)	78, 302, 633
MslI	CAYNNNNRTG	2 cut(s)	698, 962
Msp20I	TGGCCA	1 cut(s)	722
MspA1I	CMGCKG	2 cut(s)	180, 1684
MspI	CCGG	5 cut(s)	114, 228, 243, 842, 882
MspR9I	CCNGG	4 cut(s)	229, 244, 843, 1622
MunI	CAATTG	2 cut(s)	1656, 1707
Mva1269I	GAATGC	1 cut(s)	1353
MvaI	CCWGG	1 cut(s)	1622
MwoI	GCNNNNNNNGC	6 cut(s)	11, 128, 1049, 1100, 1409, 1670
NciI	CCSGG	3 cut(s)	229, 244, 843
NdeII	GATC	6 cut(s)	348, 432, 943, 1291, 1495, 1626
NlaIII	CATG	9 cut(s)	36, 238, 253, 275, 444, 703, 839, 1136, 1739
NlaIV	GGNNCC	4 cut(s)	74, 886, 1372, 1704
NmeAIII	GCCGAG	1 cut(s)	1079
NmuCI	GTSAC	1 cut(s)	1072
NsiI	ATGCAT	1 cut(s)	927
NspV	TTCGAA	1 cut(s)	1525
PaeR7I	CTCGAG	1 cut(s)	394
PagI	TCATGA	2 cut(s)	249, 699
PaqCI	CACCTGC	1 cut(s)	56
PctI	GAATGC	1 cut(s)	1353
PfeI	GAWTC	2 cut(s)	37, 643
PflFI	GACNNNGTC	1 cut(s)	1153
PkrI	GCNGC	7 cut(s)	7, 10, 13, 31, 182, 331, 1641
PleI	GAGTC	3 cut(s)	544, 883, 1293
PpsI	GAGTC	3 cut(s)	544, 883, 1293
Ppu21I	YACGTR	2 cut(s)	428, 919
Psp1406I	AACGTT	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	1620
PspFI	CCCAGC	2 cut(s)	785, 1313
PspGI	CCWGG	1 cut(s)	1620
PspN4I	GGNNCC	4 cut(s)	74, 886, 1372, 1704
PspPI	GGNCC	4 cut(s)	83, 148, 839, 1703
PspXI	VCTCGAGB	1 cut(s)	394
PsrI	GAACNNNNNNTAC	2 cut(s)	960, 992
PstI	CTGCAG	3 cut(s)	10, 1395, 1513
PsuI	RGATCY	1 cut(s)	1495
PsyI	GACNNNGTC	1 cut(s)	1153
PvuII	CAGCTG	1 cut(s)	1684
RsaI	GTAC	4 cut(s)	555, 852, 969, 1118
RsaNI	GTAC	4 cut(s)	554, 851, 968, 1117
RseI	CAYNNNNRTG	2 cut(s)	698, 962
SalI	GTCGAC	1 cut(s)	877
SaqAI	TTAA	3 cut(s)	78, 302, 633
SatI	GCNGC	7 cut(s)	6, 9, 12, 30, 181, 330, 1640
Sau3AI	GATC	6 cut(s)	348, 432, 943, 1291, 1495, 1626
Sau96I	GGNCC	4 cut(s)	83, 148, 839, 1703
SchI	GAGTC	3 cut(s)	545, 884, 1293
ScrFI	CCNGG	4 cut(s)	229, 244, 843, 1622
SduI	GDGCHC	3 cut(s)	1390, 1455, 1751
SexAI	ACCWGGT	1 cut(s)	1620
SfaNI	GCATC	3 cut(s)	912, 934, 1234
SfcI	CTRYAG	3 cut(s)	6, 1391, 1509
Sfr274I	CTCGAG	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	1525
SinI	GGWCC	3 cut(s)	148, 839, 1703
SlaI	CTCGAG	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	698, 962
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
SsiI	CCGC	6 cut(s)	178, 1006, 1139, 1381, 1403, 1592
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	4 cut(s)	89, 224, 548, 1016
StyD4I	CCNGG	4 cut(s)	227, 242, 841, 1620
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	3 cut(s)	1153, 1435, 1588
TaiI	ACGT	5 cut(s)	27, 417, 430, 500, 921
TaqI	TCGA	5 cut(s)	351, 395, 623, 878, 1525
TatI	WGTACW	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	37, 643
Tru1I	TTAA	3 cut(s)	78, 302, 633
Tru9I	TTAA	3 cut(s)	78, 302, 633
TscAI	CASTG	4 cut(s)	484, 534, 1395, 1518
TseFI	GTSAC	1 cut(s)	1072
TseI	GCWGC	7 cut(s)	5, 8, 11, 29, 180, 329, 1639
Tsp45I	GTSAC	1 cut(s)	1072
TspDTI	ATGAA	9 cut(s)	130, 238, 575, 688, 824, 939, 988, 1540, 1716
TspGWI	ACGGA	2 cut(s)	140, 1741
TspRI	CASTG	4 cut(s)	484, 534, 1395, 1518
Tth111I	GACNNNGTC	1 cut(s)	1153
VpaK11BI	GGWCC	3 cut(s)	148, 839, 1703
XapI	RAATTY	5 cut(s)	323, 486, 778, 898, 1547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	878
XspI	CTAG	4 cut(s)	89, 224, 548, 1016
Zsp2I	ATGCAT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.