Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Reverse (-)

36722844 .. 36723656

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024528

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTTGACGACCTGGCAGTTAATGTGAAGGTTGTGAGGTTCGTCGAGAAAGAATGTTTGGAGAGTAATGGGCCTCATGGGCTTATGTTAAAGTCCTCACCCACCAAGTCCACCAAGAACAGTTATAGCTTCTCCACAGCCATAATGGACCGAGAGCAAGAAAAGGAACTAGATGAGGCTGCATGGAGATCAGGACCTAATAATAGTAAGAAAAGGACAGTTTCCACCAAGCATAATGGTGGCGGAATTAGCAGAGTGACAAGCCGAGCTGGGGGCCGTCAAACGGGCAAAGACCTTTTGACCTATCCCGGCCAGAGCGTGGTCTCATCAGTCCTTGTGATTCAACAGTATGATGTAGCTCATGCAGTGGAAGCTCCGGTGTCCAAGATGGTGCATGTTGAGTTGAAAAGTTTACCCCTGATGAATCCTCCAGTGTACAGGCCTGAGAATATTTCCAATGAATTTGTGCGATCAATATTAATGAAGCCGTGCATGTGTAAAAATGTGTCCATCTATACATGTTTCAATTTTCCTCCACAAATGTGGGATTGTTTTTTTCATGTCGGTACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

192

Amino Acids

21.27

Weight (kDa)

8.97

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	461
AfaI	GTAC	2 cut(s)	437, 568
AfiI	CCNNNNNNNGG	3 cut(s)	271, 283, 319
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	3 cut(s)	344, 406, 526
AjnI	CCWGG	1 cut(s)	12
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AleI	CACNNNNGTG	1 cut(s)	541
AluBI	AGCT	4 cut(s)	129, 269, 359, 374
AluI	AGCT	4 cut(s)	129, 269, 359, 374
Alw26I	GTCTC	1 cut(s)	328
AoxI	GGCC	4 cut(s)	71, 274, 310, 440
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	461
AseI	ATTAAT	1 cut(s)	479
AspS9I	GGNCC	4 cut(s)	71, 148, 194, 274
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	90
AvaII	GGWCC	2 cut(s)	148, 194
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	382, 518
BceAI	ACGGC	2 cut(s)	261, 472
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	14, 309
Bme18I	GGWCC	2 cut(s)	148, 194
BmgT120I	GGNCC	4 cut(s)	71, 148, 194, 274
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	14, 309
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 283, 319
Bse1I	ACTGG	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	3 cut(s)	271, 283, 319
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	4 cut(s)	73, 276, 312, 442
BsiSI	CCGG	2 cut(s)	309, 377
BslI	CCNNNNNNNGG	3 cut(s)	271, 283, 319
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	73, 276, 312, 442
Bso31I	GGTCTC	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	188, 470
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	4 cut(s)	73, 276, 312, 442
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	431
BssMI	GATC	2 cut(s)	188, 470
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	3 cut(s)	122, 220, 348
BstAUI	TGTACA	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	444
BstKTI	GATC	2 cut(s)	191, 473
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	2 cut(s)	188, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 249, 371
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	3 cut(s)	398, 496, 522
BstSCI	CCNGG	2 cut(s)	12, 307
BstV1I	GCAGC	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	543
BsuRI	GGCC	4 cut(s)	73, 276, 312, 442
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 438
Cfr13I	GGNCC	4 cut(s)	71, 148, 194, 274
Csp6I	GTAC	2 cut(s)	436, 567
CviAII	CATG	7 cut(s)	77, 183, 362, 395, 493, 519, 560
CviQI	GTAC	2 cut(s)	436, 567
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	2 cut(s)	190, 472
DpnII	GATC	2 cut(s)	188, 470
EaeI	YGGCCR	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	148, 194
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	12
FaeI	CATG	7 cut(s)	80, 186, 365, 398, 496, 522, 563
FatI	CATG	7 cut(s)	76, 182, 361, 394, 492, 518, 559
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	73, 276, 312, 442
HapII	CCGG	2 cut(s)	309, 377
Hin1II	CATG	7 cut(s)	80, 186, 365, 398, 496, 522, 563
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	340, 424
HpaII	CCGG	2 cut(s)	309, 377
HphI	GGTGA	1 cut(s)	90
Hpy166II	GTNNAC	4 cut(s)	7, 111, 413, 436
Hpy188III	TCNNGA	2 cut(s)	46, 192
Hpy8I	GTNNAC	4 cut(s)	7, 111, 413, 436
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	3 cut(s)	122, 220, 348
HpyCH4V	TGCA	4 cut(s)	182, 365, 394, 492
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 249, 371
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	7 cut(s)	80, 186, 365, 398, 496, 522, 563
Kzo9I	GATC	2 cut(s)	188, 470
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	190, 472
MboI	GATC	2 cut(s)	188, 470
MluCI	AATT	3 cut(s)	246, 461, 526
MnlI	CCTC	6 cut(s)	30, 84, 106, 169, 438, 543
MseI	TTAA	4 cut(s)	21, 89, 479, 574
MslI	CAYNNNNRTG	2 cut(s)	237, 541
MspI	CCGG	2 cut(s)	309, 377
MspR9I	CCNGG	2 cut(s)	14, 309
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	79, 249, 371
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	188, 470
NlaIII	CATG	7 cut(s)	80, 186, 365, 398, 496, 522, 563
NlaIV	GGNNCC	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	3 cut(s)	398, 496, 522
OliI	CACNNNNGTG	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	442
PciI	ACATGT	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	340, 424
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	194
PscI	ACATGT	1 cut(s)	518
PshBI	ATTAAT	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	4 cut(s)	71, 148, 194, 274
PspPPI	RGGWCCY	1 cut(s)	194
RsaI	GTAC	2 cut(s)	437, 568
RsaNI	GTAC	2 cut(s)	436, 567
RseI	CAYNNNNRTG	2 cut(s)	237, 541
SaqAI	TTAA	4 cut(s)	21, 89, 479, 574
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	188, 470
Sau96I	GGNCC	4 cut(s)	71, 148, 194, 274
ScrFI	CCNGG	2 cut(s)	14, 309
SinI	GGWCC	2 cut(s)	148, 194
SmiMI	CAYNNNNRTG	2 cut(s)	237, 541
Sse9I	AATT	3 cut(s)	246, 461, 526
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	1 cut(s)	243
SspI	AATATT	2 cut(s)	451, 477
SspMI	CTAG	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	2 cut(s)	12, 307
TaaI	ACNGT	3 cut(s)	122, 220, 348
TaqI	TCGA	1 cut(s)	45
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	3 cut(s)	246, 461, 526
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	340, 424
Tru1I	TTAA	4 cut(s)	21, 89, 479, 574
Tru9I	TTAA	4 cut(s)	21, 89, 479, 574
TscAI	CASTG	2 cut(s)	372, 438
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	4 cut(s)	437, 474, 497, 548
TspRI	CASTG	2 cut(s)	372, 438
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	148, 194
VspI	ATTAAT	1 cut(s)	479
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	3 cut(s)	398, 496, 522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.