Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Reverse (-)

36241159 .. 36245520

Gene Structure 4362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2367 bp

ATGGAACCTATGGTTCCGAACCTAACCAGCATCAGAACTTCTTCAGATGGAGCTTGGCAGGGTGACAATCCTCTGAACCATGCCTTCCCGTTGTTGATAGTTCAAACCACTCTCGTCCTCTTCATCAGTCGCTTCCTTGCCTTCATTCTCAAACCACTCCGCCAACCTAAGGTCATTGCCGAGATTTTAGGTGGGATTTTGCTAGGACCTTCTGCACTTGGCCGGATCAAAGATTTCTCCCACATCATATTCCCTTCATGGAGCACTCCCATACTCGAATCTGTAGGAAGCATCGGCCTCCTCTTCTACCTATTCCTCGTAGGCCTCGAGCTCGACTTGAGCTCCATTCGCCGCAGTGGCAGAAGCGCCATCACCATAGCACTCGCAGGCATTTCCCTCCCTTTCCTTATCGCAGTAGGAGTCACATTCCTCATGCGCAAGGCCATCAACGGTGAGAACAAAGTAGGGTACCCTCAGTTCCTCATGTTCATAGGGGTAGCCCTCTCCATCACCGCCTTCCCTGTCCTCGCACGCATCTTAGCAGAGCTCAAACTGCTCACCACACGCATAGGTGAGACGGCAATGGCTGCGGCAGCCTTCAACGACGTGGCTGCATGGATTCTGCTGGCCTTGGCCGTGGCCTTAGCCGGTGGTAACCATAAAGGCCCTCTAGTCTCCATTTGGATTCTCATTTCCGGCGTGGCTTTTGTTGCTTTTATGTTCATTCTGGTCCGTCCTATGATGACTTGGGTTGCTAACCGTTGCTCATCTCAAATTGAGGACGAAGCTTATATATGCTTAACCCTAGCCGCGGTCATGCTGTCCGGGTTCATGACTGACCTAATTGGTGTCCATGCCATCTTTGGGGCATTTGTTTTCGGATTAACCATTCCGAAAGGGGGTGAATTCGCAGCCAAACTGACTATGAGGATCGAGGATTTTGTGTCCGGTTTGCTTCTCCCTCTCTACTTTGCCTCGAGTGGTTTGAAGACTGACGTTACTAAAATACATGGGATCAAGGCATGGGGTCTTGTGGCTCTGGTTATATCAGTTTCTTGCAGTGGAAAAATTCTGGGAACGTTTTTGGTTGCAATGATGTGTACGATACCAGTGAGGGAATCATTAGCTCTAGGTGTGCTGATGAATACTAAAGGATTGGTGGAGCTTATTGTTCTGAATATTGGCAAGGAGAAAAAGATTCTAAACGACGAGATGTTTGCGATTTTAGTGCTGATGGCACTTTTTACCACCTTCATGACGACGCCAACAGTGATGGCCATTTACAAACCCTATGTCTTTGCTTCCCAATCTCAGAGTAGTTTAGAGAGACAGAATTCTCCCACCAAGAACTCGAAGAAACAGAAGGAACTTCGAATCCTTGCTTGTATTCATGGACCGGGAAGTGTACCCTCCCTTATCAACCTCATTGAGTCGACCGGAACCTCCTCCGAGAATTCTCTTCTCAAAGTTTACGTGATGCATCTTGTTGAACTCACTGATCGTTCATCCTCCATTATGATGGTACATAAAGTTCGGAAAAACGGCTTGCCCTTCATCAACCGCTTTTGTCTAGGGGTGGCACACCATATCGCCTCAGGGGTGGCACACCATATCGCCTCAGCATTTGAAGCTTATAGTCAAGTTGGTCAAGTCGCCATCCGTCACACAACAGCCATCTCGGGTTTGTCTACGATGCACGAGGATATTCTCCATGTTGCGGAAGCTAAGAAGGTGTCCATCATTATCTTGCCTTTCAACAAACAGTGGATTAAACAGGGTGAAGAGACGATGGATAATTTAGAGCATGGCTGGAAAGCAGTCAATGAGAGTGTTCTAAAATGTGCTAATTGCTCAGTAGCATTGTTTGTGGATCGTGGACTCGGTGTTGGAGCTGGGAAGGGTGCAAATACTACCAGTCTGAAGAGGGTGTGCATTCTATTCTTAGGTGGACCCGATGACCGCAGGGCACTGGAGTATGTTGGGGGAATTGCAAATCAAAGCGTTGTAGTTACTGTTGTGAGGTGTTTGGAGCAGAGCACTACTCCTCTGAGCCCCATCATCAACCCCGACAGGGAACTTGACGAGACTGCAGTGGCAGAGTTTCAAAGGCGGAATGGGTCGGTGGAATTTGTAGAGAAGGCGGTAGTCGGCAACGTTATAGACACGGTGGCGGGCATAGCTCAGAGCAGGGAATACAACCTGGTGATCGTGGGAAAGCAGCACCACCCTTCAACAATTGTACCAGAATTGGCTCACAGTCAGCTGGAGCATACCGAACTGGGACCAATTGGAGACACATTAGCTTCATCCTTGCACGGAATTTCTTGCTCCGTGCTTGTGATACAAGCACCACAGAATAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

788

Amino Acids

85.05

Weight (kDa)

8.72

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	41 - 424	2.7e-61	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	488 - 632	2.3e-30	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	643 - 782	7.3e-10	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	468
AccI	GTMKAC	2 cut(s)	1433, 1688
AccII	CGCG	1 cut(s)	812
AclI	AACGTT	2 cut(s)	1079, 2154
AclWI	GGATC	4 cut(s)	233, 938, 1022, 1878
AcoI	YGGCCR	3 cut(s)	220, 633, 1275
AcsI	RAATTY	6 cut(s)	905, 1068, 1333, 1453, 2126, 2319
AcuI	CTGAAG	2 cut(s)	27, 1940
AcyI	GRCGYC	1 cut(s)	1262
AfaI	GTAC	5 cut(s)	470, 1102, 1407, 1524, 2241
AfiI	CCNNNNNNNGG	6 cut(s)	169, 811, 864, 899, 1717, 2071
AgsI	TTSAA	8 cut(s)	104, 601, 988, 1490, 1628, 1756, 2105, 2232
AjiI	CACGTC	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	2199
AloI	GAACNNNNNNTCC	2 cut(s)	1359, 1391
Alw21I	GWGCWC	5 cut(s)	266, 333, 344, 549, 2039
Alw26I	GTCTC	6 cut(s)	569, 679, 1321, 1778, 2078, 2286
AlwI	GGATC	4 cut(s)	233, 938, 1022, 1878
Ama87I	CYCGRG	3 cut(s)	326, 976, 1678
AoxI	GGCC	9 cut(s)	220, 295, 322, 441, 627, 633, 639, 664, 1275
ApeKI	GCWGC	5 cut(s)	587, 593, 611, 911, 2218
ApoI	RAATTY	6 cut(s)	905, 1068, 1333, 1453, 2126, 2319
ArsI	GACNNNNNNTTYG	4 cut(s)	1199, 1231, 1278, 1310
Asp700I	GAANNNNTTC	1 cut(s)	40
Asp718I	GGTACC	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	368, 438
AspS9I	GGNCC	6 cut(s)	206, 665, 730, 1394, 1949, 2282
AsuC2I	CCSGG	2 cut(s)	826, 1398
AsuHPI	GGTGA	9 cut(s)	74, 364, 464, 502, 550, 584, 914, 1790, 2215
AsuII	TTCGAA	1 cut(s)	1372
AvaI	CYCGRG	3 cut(s)	326, 976, 1678
AvaII	GGWCC	5 cut(s)	206, 730, 1394, 1949, 2282
AxyI	CCTNAGG	2 cut(s)	168, 1594
BaeGI	GKGCMC	1 cut(s)	1969
BaeI	ACNNNNGTAYC	2 cut(s)	2223, 2256
BalI	TGGCCA	1 cut(s)	1277
BanI	GGYRCC	1 cut(s)	468
BanII	GRGCYC	4 cut(s)	333, 344, 549, 2054
BauI	CACGAG	1 cut(s)	1697
BbsI	GAAGAC	1 cut(s)	995
Bbv12I	GWGCWC	5 cut(s)	266, 333, 344, 549, 2039
BbvCI	CCTCAGC	1 cut(s)	1618
BbvI	GCAGC	5 cut(s)	574, 598, 605, 923, 2230
BceAI	ACGGC	3 cut(s)	594, 620, 1558
BcgI	CGANNNNNNTGC	6 cut(s)	593, 627, 1199, 1210, 1233, 1244
BciT130I	CCWGG	1 cut(s)	2201
BcnI	CCSGG	2 cut(s)	826, 1398
BcoDI	GTCTC	6 cut(s)	569, 679, 1321, 1778, 2078, 2286
BfaI	CTAG	5 cut(s)	203, 671, 806, 1130, 1571
BfmI	CTRYAG	2 cut(s)	282, 2088
BfoI	RGCGCY	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	357
BisI	GCNGC	8 cut(s)	352, 588, 591, 594, 612, 810, 912, 2219
BlsI	GCNGC	8 cut(s)	353, 589, 592, 595, 613, 811, 913, 2220
Bme1390I	CCNGG	3 cut(s)	826, 1398, 2201
Bme18I	GGWCC	5 cut(s)	206, 730, 1394, 1949, 2282
BmeT110I	CYCGRG	3 cut(s)	326, 976, 1678
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	6 cut(s)	206, 665, 730, 1394, 1949, 2282
BmiI	GGNNCC	6 cut(s)	6, 15, 470, 1441, 1951, 2283
BmrFI	CCNGG	3 cut(s)	826, 1398, 2201
BmrI	ACTGGG	1 cut(s)	2288
BmsI	GCATC	6 cut(s)	39, 300, 543, 1467, 1489, 1683
BmuI	ACTGGG	1 cut(s)	2288
BpiI	GAAGAC	1 cut(s)	995
BplI	GAGNNNNNCTC	2 cut(s)	2026, 2058
BpmI	CTGGAG	2 cut(s)	1991, 2285
Bpu10I	CCTNAGC	2 cut(s)	643, 1618
Bpu14I	TTCGAA	1 cut(s)	1372
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	2 cut(s)	826, 1398
BsaAI	YACGTR	1 cut(s)	1474
BsaHI	GRCGYC	1 cut(s)	1262
BsaJI	CCNNGG	3 cut(s)	630, 636, 810
BsaWI	WCCGGW	2 cut(s)	947, 1436
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	6 cut(s)	169, 811, 864, 899, 1717, 2071
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	4 cut(s)	1109, 1914, 1974, 2283
Bse21I	CCTNAGG	2 cut(s)	168, 1594
Bse3DI	GCAATG	3 cut(s)	174, 588, 1098
BseBI	CCWGG	1 cut(s)	2201
BseDI	CCNNGG	3 cut(s)	630, 636, 810
BseGI	GGATG	3 cut(s)	1505, 1656, 2306
BseLI	CCNNNNNNNGG	6 cut(s)	169, 811, 864, 899, 1717, 2071
BseMI	GCAATG	3 cut(s)	174, 588, 1098
BseMII	CTCAG	7 cut(s)	488, 1325, 1608, 1632, 1866, 2039, 2195
BseNI	ACTGG	4 cut(s)	1109, 1914, 1974, 2283
BseRI	GAGGAG	3 cut(s)	290, 1435, 2034
BseSI	GKGCMC	1 cut(s)	1969
BseXI	GCAGC	5 cut(s)	574, 598, 605, 923, 2230
BseYI	CCCAGC	1 cut(s)	1892
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	812
Bsh1285I	CGRYCG	1 cut(s)	1437
BshFI	GGCC	9 cut(s)	222, 297, 324, 443, 629, 635, 641, 666, 1277
BshNI	GGYRCC	1 cut(s)	468
BsiEI	CGRYCG	1 cut(s)	1437
BsiHKAI	GWGCWC	5 cut(s)	266, 333, 344, 549, 2039
BsiHKCI	CYCGRG	3 cut(s)	326, 976, 1678
BsiSI	CCGG	7 cut(s)	223, 648, 696, 825, 948, 1397, 1437
BslFI	GGGAC	1 cut(s)	2295
BslI	CCNNNNNNNGG	6 cut(s)	169, 811, 864, 899, 1717, 2071
BsmAI	GTCTC	6 cut(s)	569, 679, 1321, 1778, 2078, 2286
BsmBI	CGTCTC	2 cut(s)	569, 1778
BsmFI	GGGAC	1 cut(s)	2295
BsmI	GAATGC	1 cut(s)	1932
BsnI	GGCC	9 cut(s)	222, 297, 324, 443, 629, 635, 641, 666, 1277
BsoBI	CYCGRG	3 cut(s)	326, 976, 1678
Bsp119I	TTCGAA	1 cut(s)	1372
Bsp1286I	GDGCHC	7 cut(s)	266, 333, 344, 549, 1969, 2039, 2054
Bsp143I	GATC	6 cut(s)	225, 930, 1014, 1498, 1870, 2205
BspANI	GGCC	9 cut(s)	222, 297, 324, 443, 629, 635, 641, 666, 1277
BspCNI	CTCAG	7 cut(s)	487, 1324, 1607, 1631, 1865, 2040, 2194
BspFNI	CGCG	1 cut(s)	812
BspHI	TCATGA	2 cut(s)	831, 1254
BspLI	GGNNCC	6 cut(s)	6, 15, 470, 1441, 1951, 2283
BspMAI	CTGCAG	1 cut(s)	2092
BspPI	GGATC	4 cut(s)	233, 938, 1022, 1878
BspT104I	TTCGAA	1 cut(s)	1372
BspT107I	GGYRCC	1 cut(s)	468
BsrDI	GCAATG	3 cut(s)	174, 588, 1098
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	4 cut(s)	1109, 1914, 1974, 2283
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	3 cut(s)	630, 636, 810
BssMI	GATC	6 cut(s)	225, 930, 1014, 1498, 1870, 2205
BssNI	GRCGYC	1 cut(s)	1262
BssSI	CACGAG	1 cut(s)	1697
BssT1I	CCWWGG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	1697
Bst2UI	CCWGG	1 cut(s)	2201
Bst4CI	ACNGT	7 cut(s)	452, 761, 1270, 1764, 2014, 2167, 2258
Bst6I	CTCTTC	5 cut(s)	125, 308, 1464, 1776, 1916
BstACI	GRCGYC	1 cut(s)	1262
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	1474
BstBI	TTCGAA	1 cut(s)	1372
BstC8I	GCNNGC	5 cut(s)	388, 532, 627, 1547, 2173
BstDSI	CCRYGG	2 cut(s)	636, 810
BstEII	GGTNACC	1 cut(s)	653
BstF5I	GGATG	3 cut(s)	1505, 1656, 2306
BstFNI	CGCG	1 cut(s)	812
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	2 cut(s)	368, 438
BstKTI	GATC	6 cut(s)	228, 933, 1017, 1501, 1873, 2208
BstMAI	GTCTC	6 cut(s)	569, 679, 1321, 1778, 2078, 2286
BstMBI	GATC	6 cut(s)	225, 930, 1014, 1498, 1870, 2205
BstMCI	CGRYCG	1 cut(s)	1437
BstMWI	GCNNNNNNNGC	8 cut(s)	348, 357, 553, 587, 593, 710, 1628, 2177
BstNI	CCWGG	1 cut(s)	2201
BstPI	GGTNACC	1 cut(s)	653
BstSCI	CCNGG	3 cut(s)	824, 1396, 2199
BstSFI	CTRYAG	2 cut(s)	282, 2088
BstSLI	GKGCMC	1 cut(s)	1969
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	5 cut(s)	574, 598, 605, 923, 2230
BstV2I	GAAGAC	1 cut(s)	995
BstXI	CCANNNNNNTGG	1 cut(s)	1519
Bsu36I	CCTNAGG	2 cut(s)	168, 1594
BsuRI	GGCC	9 cut(s)	222, 297, 324, 443, 629, 635, 641, 666, 1277
BtgI	CCRYGG	2 cut(s)	636, 810
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	3 cut(s)	1505, 1656, 2306
BtsI	GCAGTG	3 cut(s)	361, 1066, 2097
BtsIMutI	CAGTG	8 cut(s)	361, 1066, 1116, 1275, 1494, 1769, 1967, 2097
Cac8I	GCNNGC	5 cut(s)	388, 532, 627, 1547, 2173
CciI	TCATGA	2 cut(s)	831, 1254
CfoI	GCGC	2 cut(s)	368, 438
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	6 cut(s)	206, 665, 730, 1394, 1949, 2282
Cfr42I	CCGCGG	1 cut(s)	813
CseI	GACGC	1 cut(s)	1270
CsiI	ACCWGGT	1 cut(s)	2199
Csp6I	GTAC	5 cut(s)	469, 1101, 1406, 1523, 2240
CviQI	GTAC	5 cut(s)	469, 1101, 1406, 1523, 2240
DpnI	GATC	6 cut(s)	227, 932, 1016, 1500, 1872, 2207
DpnII	GATC	6 cut(s)	225, 930, 1014, 1498, 1870, 2205
EaeI	YGGCCR	3 cut(s)	220, 633, 1275
Eam1104I	CTCTTC	5 cut(s)	125, 308, 1464, 1776, 1916
EarI	CTCTTC	5 cut(s)	125, 308, 1464, 1776, 1916
EciI	GGCGGA	2 cut(s)	149, 2125
Ecl136II	GAGCTC	3 cut(s)	331, 342, 547
Eco130I	CCWWGG	1 cut(s)	630
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	4 cut(s)	333, 344, 549, 2054
Eco47I	GGWCC	5 cut(s)	206, 730, 1394, 1949, 2282
Eco53kI	GAGCTC	3 cut(s)	331, 342, 547
Eco57I	CTGAAG	2 cut(s)	27, 1940
Eco81I	CCTNAGG	2 cut(s)	168, 1594
Eco88I	CYCGRG	3 cut(s)	326, 976, 1678
Eco91I	GGTNACC	1 cut(s)	653
EcoICRI	GAGCTC	3 cut(s)	331, 342, 547
EcoO109I	RGGNCCY	2 cut(s)	206, 665
EcoO65I	GGTNACC	1 cut(s)	653
EcoRI	GAATTC	3 cut(s)	905, 1333, 1453
EcoRII	CCWGG	1 cut(s)	2199
EcoT14I	CCWWGG	1 cut(s)	630
EcoT22I	ATGCAT	1 cut(s)	1482
EcoT38I	GRGCYC	4 cut(s)	333, 344, 549, 2054
ErhI	CCWWGG	1 cut(s)	630
Esp3I	CGTCTC	2 cut(s)	569, 1778
FaqI	GGGAC	1 cut(s)	2295
FauI	CCCGC	1 cut(s)	2164
FblI	GTMKAC	2 cut(s)	1433, 1688
Fnu4HI	GCNGC	8 cut(s)	352, 588, 591, 594, 612, 810, 912, 2219
FokI	GGATG	3 cut(s)	1492, 1643, 2293
FriOI	GRGCYC	4 cut(s)	333, 344, 549, 2054
Fsp4HI	GCNGC	8 cut(s)	352, 588, 591, 594, 612, 810, 912, 2219
FspBI	CTAG	5 cut(s)	203, 671, 806, 1130, 1571
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	2 cut(s)	367, 437
GluI	GCNGC	8 cut(s)	352, 588, 591, 594, 612, 810, 912, 2219
GsaI	CCCAGC	1 cut(s)	1896
GsuI	CTGGAG	2 cut(s)	1991, 2285
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	9 cut(s)	222, 297, 324, 443, 629, 635, 641, 666, 1277
HapII	CCGG	7 cut(s)	223, 648, 696, 825, 948, 1397, 1437
HgaI	GACGC	1 cut(s)	1270
HhaI	GCGC	2 cut(s)	368, 438
Hin1I	GRCGYC	1 cut(s)	1262
Hin6I	GCGC	2 cut(s)	366, 436
HinP1I	GCGC	2 cut(s)	366, 436
HincII	GTYRAC	1 cut(s)	1434
HindII	GTYRAC	1 cut(s)	1434
HindIII	AAGCTT	2 cut(s)	786, 1629
HinfI	GANTC	9 cut(s)	278, 420, 619, 685, 1118, 1198, 1374, 1430, 1878
HpaII	CCGG	7 cut(s)	223, 648, 696, 825, 948, 1397, 1437
HphI	GGTGA	9 cut(s)	74, 364, 464, 502, 550, 584, 914, 1790, 2215
Hpy166II	GTNNAC	7 cut(s)	1101, 1406, 1434, 1471, 1689, 1877, 1949
Hpy188III	TCNNGA	2 cut(s)	832, 1255
Hpy8I	GTNNAC	7 cut(s)	1101, 1406, 1434, 1471, 1689, 1877, 1949
Hpy99I	CGWCG	3 cut(s)	608, 1211, 1264
HpyCH4III	ACNGT	7 cut(s)	452, 761, 1270, 1764, 2014, 2167, 2258
HpyCH4IV	ACGT	5 cut(s)	606, 996, 1079, 1473, 2154
HpyF10VI	GCNNNNNNNGC	8 cut(s)	348, 357, 553, 587, 593, 710, 1628, 2177
HpySE526I	ACGT	5 cut(s)	606, 996, 1079, 1473, 2154
Hsp92I	GRCGYC	1 cut(s)	1262
HspAI	GCGC	2 cut(s)	366, 436
KpnI	GGTACC	1 cut(s)	472
KspI	CCGCGG	1 cut(s)	813
Kzo9I	GATC	6 cut(s)	225, 930, 1014, 1498, 1870, 2205
LmnI	GCTCC	8 cut(s)	50, 261, 347, 1162, 1889, 2029, 2266, 2333
Lsp1109I	GCAGC	5 cut(s)	574, 598, 605, 923, 2230
LweI	GCATC	6 cut(s)	39, 300, 543, 1467, 1489, 1683
MabI	ACCWGGT	1 cut(s)	2199
MaeI	CTAG	5 cut(s)	203, 671, 806, 1130, 1571
MaeII	ACGT	5 cut(s)	606, 996, 1079, 1473, 2154
MaeIII	GTNAC	6 cut(s)	62, 421, 653, 997, 1661, 2008
MalI	GATC	6 cut(s)	227, 932, 1016, 1500, 1872, 2207
MboI	GATC	6 cut(s)	225, 930, 1014, 1498, 1870, 2205
MboII	GAAGA	8 cut(s)	33, 112, 295, 1000, 1366, 1451, 1793, 1933
MfeI	CAATTG	2 cut(s)	2235, 2286
MhlI	GDGCHC	7 cut(s)	266, 333, 344, 549, 1969, 2039, 2054
MlsI	TGGCCA	1 cut(s)	1277
MluNI	TGGCCA	1 cut(s)	1277
MlyI	GAGTC	3 cut(s)	429, 1439, 1872
MmeI	TCCRAC	1 cut(s)	1867
Mox20I	TGGCCA	1 cut(s)	1277
Mph1103I	ATGCAT	1 cut(s)	1482
MroXI	GAANNNNTTC	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	1277
MseI	TTAA	3 cut(s)	800, 884, 1770
MslI	CAYNNNNRTG	2 cut(s)	1253, 1517
Msp20I	TGGCCA	1 cut(s)	1277
MspA1I	CMGCKG	2 cut(s)	812, 2263
MspI	CCGG	7 cut(s)	223, 648, 696, 825, 948, 1397, 1437
MspR9I	CCNGG	3 cut(s)	826, 1398, 2201
MunI	CAATTG	2 cut(s)	2235, 2286
Mva1269I	GAATGC	1 cut(s)	1932
MvaI	CCWGG	1 cut(s)	2201
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	8 cut(s)	348, 357, 553, 587, 593, 710, 1628, 2177
NciI	CCSGG	2 cut(s)	826, 1398
NdeII	GATC	6 cut(s)	225, 930, 1014, 1498, 1870, 2205
NlaIV	GGNNCC	6 cut(s)	6, 15, 470, 1441, 1951, 2283
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	3 cut(s)	62, 421, 1661
NsbI	TGCGCA	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	1482
NspV	TTCGAA	1 cut(s)	1372
PaeR7I	CTCGAG	2 cut(s)	326, 976
PagI	TCATGA	2 cut(s)	831, 1254
PceI	AGGCCT	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PctI	GAATGC	1 cut(s)	1932
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	6 cut(s)	278, 619, 685, 1118, 1198, 1374
PkrI	GCNGC	8 cut(s)	353, 589, 592, 595, 613, 811, 913, 2220
PleI	GAGTC	3 cut(s)	428, 1438, 1872
PpsI	GAGTC	3 cut(s)	428, 1438, 1872
Ppu21I	YACGTR	1 cut(s)	1474
PpuMI	RGGWCCY	1 cut(s)	206
Psp124BI	GAGCTC	3 cut(s)	333, 344, 549
Psp1406I	AACGTT	2 cut(s)	1079, 2154
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	2199
PspEI	GGTNACC	1 cut(s)	653
PspFI	CCCAGC	1 cut(s)	1892
PspGI	CCWGG	1 cut(s)	2199
PspN4I	GGNNCC	6 cut(s)	6, 15, 470, 1441, 1951, 2283
PspPI	GGNCC	6 cut(s)	206, 665, 730, 1394, 1949, 2282
PspPPI	RGGWCCY	1 cut(s)	206
PspXI	VCTCGAGB	2 cut(s)	326, 976
PsrI	GAACNNNNNNTAC	4 cut(s)	461, 493, 1515, 1547
PstI	CTGCAG	1 cut(s)	2092
PvuII	CAGCTG	1 cut(s)	2263
RsaI	GTAC	5 cut(s)	470, 1102, 1407, 1524, 2241
RsaNI	GTAC	5 cut(s)	469, 1101, 1406, 1523, 2240
RseI	CAYNNNNRTG	2 cut(s)	1253, 1517
SacI	GAGCTC	3 cut(s)	333, 344, 549
SacII	CCGCGG	1 cut(s)	813
SalI	GTCGAC	1 cut(s)	1432
SaqAI	TTAA	3 cut(s)	800, 884, 1770
SatI	GCNGC	8 cut(s)	352, 588, 591, 594, 612, 810, 912, 2219
Sau3AI	GATC	6 cut(s)	225, 930, 1014, 1498, 1870, 2205
Sau96I	GGNCC	6 cut(s)	206, 665, 730, 1394, 1949, 2282
SchI	GAGTC	3 cut(s)	429, 1439, 1872
ScrFI	CCNGG	3 cut(s)	826, 1398, 2201
SduI	GDGCHC	7 cut(s)	266, 333, 344, 549, 1969, 2039, 2054
SexAI	ACCWGGT	1 cut(s)	2199
SfaNI	GCATC	6 cut(s)	39, 300, 543, 1467, 1489, 1683
SfcI	CTRYAG	2 cut(s)	282, 2088
Sfr274I	CTCGAG	2 cut(s)	326, 976
Sfr303I	CCGCGG	1 cut(s)	813
SfuI	TTCGAA	1 cut(s)	1372
SgrBI	CCGCGG	1 cut(s)	813
SinI	GGWCC	5 cut(s)	206, 730, 1394, 1949, 2282
SlaI	CTCGAG	2 cut(s)	326, 976
SmiMI	CAYNNNNRTG	2 cut(s)	1253, 1517
SmlI	CTYRAG	3 cut(s)	326, 337, 976
SmoI	CTYRAG	3 cut(s)	326, 337, 976
SseBI	AGGCCT	1 cut(s)	324
SspI	AATATT	1 cut(s)	1180
SspMI	CTAG	5 cut(s)	203, 671, 806, 1130, 1571
SstI	GAGCTC	3 cut(s)	333, 344, 549
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	824, 1396, 2199
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	7 cut(s)	452, 761, 1270, 1764, 2014, 2167, 2258
TaiI	ACGT	5 cut(s)	609, 999, 1082, 1476, 2157
TaqI	TCGA	8 cut(s)	276, 327, 333, 933, 977, 1352, 1372, 1433
TauI	GCSGC	3 cut(s)	354, 593, 812
TfiI	GAWTC	6 cut(s)	278, 619, 685, 1118, 1198, 1374
Tru1I	TTAA	3 cut(s)	800, 884, 1770
Tru9I	TTAA	3 cut(s)	800, 884, 1770
TscAI	CASTG	8 cut(s)	361, 1066, 1116, 1275, 1501, 1769, 1974, 2097
TseFI	GTSAC	3 cut(s)	62, 421, 1661
TseI	GCWGC	5 cut(s)	587, 593, 611, 911, 2218
Tsp45I	GTSAC	3 cut(s)	62, 421, 1661
TspGWI	ACGGA	4 cut(s)	722, 1649, 2320, 2331
TspRI	CASTG	8 cut(s)	361, 1066, 1116, 1275, 1501, 1769, 1974, 2097
VpaK11BI	GGWCC	5 cut(s)	206, 730, 1394, 1949, 2282
XapI	RAATTY	6 cut(s)	905, 1068, 1333, 1453, 2126, 2319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XhoI	CTCGAG	2 cut(s)	326, 976
XmiI	GTMKAC	2 cut(s)	1433, 1688
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	5 cut(s)	203, 671, 806, 1130, 1571
Zsp2I	ATGCAT	1 cut(s)	1482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.