Rmu_sc0012393.1_g000001

Cation H( ) antiporter

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012393.1
Physical Location & Seq
Reverse (-)
1 .. 2024
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012393.1_g000001.1.cds

Sequence Viewer

Length: 1200 bp
atggtgaatataaccaccatcagagcagcatcaaatggcctgtggcaaggtgacaaccctttaaacttcgccttcccactcctaatagttcagaccaccttgatcatcgtcgtcagccgcttccttgctttcctactgaaacccctccaccaacccaaagtcattgcagagattgtcggtggaattctgcttggtccttcagctttcggacgaaacatagattacttgcacaaaatctttccttcatggggcactccaatattagaatcagtggcaagtattggtcttctattttacttgttccttgtaggcttagagctcgacctgagctccactcgccgaagtggcagaaggggtttcagcatagccctcgccggcataacgctccctttcctcttcggcatcggcgtcgctctggtcttccgcaaaacaattgatggagctgacaaagcagggttcactcagttccttgtcttcatgggagttgccctctccatcaccgccttccctgtgcttgcccgcatcttagcggagctcaaactgttaacaactcagattggggagactgccatggcggctgctgccgtcaacgacgttggtgcatggatcttgctggccgtggccgtggccctggcaggtgacagtgctggtggccacaacaagagccctttgatatgcatttgggtcctcctatcaggtgttgcctttgtggccttcatgatggtcgtgatccgacctgccatgaaatgggtcgccagccggtgcacaccggagcaagatgtcttggacgaagcctatatttgcttaaccttaaccggagtaatggtggccgggttcatgactgacataattggaattcattccatatttggagctttcgtcttcggactcacaattccgaaaggacagtttgcagatagattaatatcgaggattgaagactttgtgtccggcttgttgcttccgctttactttgcatcaagtgggttgaaaacagatgtggctaaaatacgtggcggcagggcatgggggttgttggctctggttataaccactgcttgcgctgggaagattctcgggacgtttgtggtggcaatgatgtttatgattccggccagagagtcattgacgcttggtgtgctcatgaacactaaaggcttggtagagctcattgttctaaacattggcaaggagcagaag

Protein Analysis

400

Amino Acids

42.79

Weight (kDa)

9.32

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1049
AarI CACCTGC 1 cut(s) 626
Acc36I ACCTGC 2 cut(s) 626, 745
AccB7I CCANNNNNTGG 1 cut(s) 747
AciI CCGC 8 cut(s) 118, 424, 501, 520, 530, 575, 965, 1017
AclWI GGATC 2 cut(s) 614, 724
AcoI YGGCCR 5 cut(s) 615, 621, 652, 828, 1113
AcsI RAATTY 2 cut(s) 183, 855
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 408
AfiI CCNNNNNNNGG 2 cut(s) 248, 747
AgsI TTSAA 2 cut(s) 938, 991
AhdI GACNNNNNGTC 1 cut(s) 946
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 7 cut(s) 203, 319, 330, 443, 535, 875, 1168
AluI AGCT 7 cut(s) 203, 319, 330, 443, 535, 875, 1168
Alw21I GWGCWC 6 cut(s) 321, 332, 537, 767, 1143, 1170
Alw26I GTCTC 1 cut(s) 557
Alw44I GTGCAC 1 cut(s) 763
AlwI GGATC 2 cut(s) 614, 724
Ama87I CYCGRG 1 cut(s) 1076
AoxI GGCC 8 cut(s) 37, 615, 621, 627, 652, 711, 828, 1113
ApaLI GTGCAC 1 cut(s) 763
ApeKI GCWGC 3 cut(s) 26, 578, 581
ApoI RAATTY 2 cut(s) 183, 855
AseI ATTAAT 1 cut(s) 923
Asp700I GAANNNNTTC 1 cut(s) 859
AspLEI GCGC 1 cut(s) 1064
AspS9I GGNCC 3 cut(s) 194, 628, 685
AsuC2I CCSGG 1 cut(s) 832
AsuHPI GGTGA 4 cut(s) 16, 62, 490, 650
AvaI CYCGRG 1 cut(s) 1076
AvaII GGWCC 2 cut(s) 194, 685
BaeGI GKGCMC 2 cut(s) 254, 767
BalI TGGCCA 1 cut(s) 654
BanII GRGCYC 5 cut(s) 321, 332, 537, 668, 1170
BbsI GAAGAC 5 cut(s) 278, 412, 466, 874, 945
Bbv12I GWGCWC 6 cut(s) 321, 332, 537, 767, 1143, 1170
BbvI GCAGC 3 cut(s) 38, 565, 568
BccI CCATC 4 cut(s) 26, 431, 503, 715
BceAI ACGGC 3 cut(s) 569, 602, 608
BcgI CGANNNNNNTGC 6 cut(s) 352, 386, 391, 425, 581, 615
BciT130I CCWGG 1 cut(s) 632
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 1 cut(s) 557
BfuAI ACCTGC 2 cut(s) 626, 745
BglI GCCNNNNNGGC 3 cut(s) 345, 575, 710
BisI GCNGC 6 cut(s) 27, 118, 576, 579, 582, 1018
BlsI GCNGC 6 cut(s) 28, 119, 577, 580, 583, 1019
Bme1390I CCNGG 2 cut(s) 632, 832
Bme18I GGWCC 2 cut(s) 194, 685
BmeRI GACNNNNNGTC 1 cut(s) 946
BmeT110I CYCGRG 1 cut(s) 1076
BmgT120I GGNCC 3 cut(s) 194, 628, 685
BmiI GGNNCC 1 cut(s) 686
BmrFI CCNGG 2 cut(s) 632, 832
BmsI GCATC 4 cut(s) 38, 411, 531, 986
BpiI GAAGAC 5 cut(s) 278, 412, 466, 874, 945
BplI GAGNNNNNCTC 4 cut(s) 319, 351, 474, 506
Bpu10I CCTNAGC 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 832
BsaAI YACGTR 1 cut(s) 1013
BsaBI GATNNNNATC 1 cut(s) 925
BsaHI GRCGYC 1 cut(s) 408
BsaJI CCNNGG 4 cut(s) 570, 618, 624, 630
BsaWI WCCGGW 2 cut(s) 769, 815
BsaXI ACNNNNNCTCC 6 cut(s) 314, 344, 810, 840, 864, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 747
Bse118I RCCGGY 2 cut(s) 374, 759
Bse3DI GCAATG 2 cut(s) 162, 1101
Bse8I GATNNNNATC 1 cut(s) 925
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 4 cut(s) 570, 618, 624, 630
BseJI GATNNNNATC 1 cut(s) 925
BseLI CCNNNNNNNGG 2 cut(s) 248, 747
BseMI GCAATG 2 cut(s) 162, 1101
BseMII CTCAG 3 cut(s) 317, 476, 566
BseSI GKGCMC 2 cut(s) 254, 767
BseXI GCAGC 3 cut(s) 38, 565, 568
BseYI CCCAGC 1 cut(s) 1064
BshFI GGCC 8 cut(s) 39, 617, 623, 629, 654, 713, 830, 1115
BsiHKAI GWGCWC 6 cut(s) 321, 332, 537, 767, 1143, 1170
BsiHKCI CYCGRG 1 cut(s) 1076
BsiSI CCGG 7 cut(s) 375, 760, 770, 816, 831, 951, 1112
BslFI GGGAC 1 cut(s) 1093
BslI CCNNNNNNNGG 2 cut(s) 248, 747
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 1093
BsnI GGCC 8 cut(s) 39, 617, 623, 629, 654, 713, 830, 1115
BsoBI CYCGRG 1 cut(s) 1076
Bsp1286I GDGCHC 8 cut(s) 254, 321, 332, 537, 668, 767, 1143, 1170
Bsp143I GATC 3 cut(s) 102, 606, 729
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 8 cut(s) 118, 424, 501, 520, 530, 575, 965, 1017
BspANI GGCC 8 cut(s) 39, 617, 623, 629, 654, 713, 830, 1115
BspCNI CTCAG 3 cut(s) 318, 475, 565
BspHI TCATGA 3 cut(s) 717, 837, 1143
BspLI GGNNCC 1 cut(s) 686
BspMI ACCTGC 2 cut(s) 626, 745
BspPI GGATC 2 cut(s) 614, 724
BsrDI GCAATG 2 cut(s) 162, 1101
BsrFI RCCGGY 2 cut(s) 374, 759
BssAI RCCGGY 2 cut(s) 374, 759
BssECI CCNNGG 4 cut(s) 570, 618, 624, 630
BssMI GATC 3 cut(s) 102, 606, 729
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 3 cut(s) 543, 644, 909
Bst6I CTCTTC 1 cut(s) 401
BstACI GRCGYC 1 cut(s) 408
BstBAI YACGTR 1 cut(s) 1013
BstC8I GCNNGC 6 cut(s) 376, 516, 520, 615, 757, 1060
BstDEI CTNAG 5 cut(s) 313, 326, 462, 526, 552
BstDSI CCRYGG 3 cut(s) 570, 618, 624
BstHHI GCGC 1 cut(s) 1064
BstKTI GATC 3 cut(s) 105, 609, 732
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 3 cut(s) 102, 606, 729
BstMWI GCNNNNNNNGC 7 cut(s) 336, 345, 449, 575, 581, 710, 1138
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 2 cut(s) 630, 830
BstSLI GKGCMC 2 cut(s) 254, 767
BstV1I GCAGC 3 cut(s) 38, 565, 568
BstV2I GAAGAC 5 cut(s) 278, 412, 466, 874, 945
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
BsuRI GGCC 8 cut(s) 39, 617, 623, 629, 654, 713, 830, 1115
BtgI CCRYGG 3 cut(s) 570, 618, 624
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 3 cut(s) 276, 649, 1053
BveI ACCTGC 2 cut(s) 626, 745
Cac8I GCNNGC 6 cut(s) 376, 516, 520, 615, 757, 1060
CciI TCATGA 3 cut(s) 717, 837, 1143
CfoI GCGC 1 cut(s) 1064
Cfr10I RCCGGY 2 cut(s) 374, 759
Cfr13I GGNCC 3 cut(s) 194, 628, 685
CseI GACGC 2 cut(s) 397, 1138
CviAII CATG 9 cut(s) 246, 478, 571, 603, 718, 742, 838, 1026, 1144
DdeI CTNAG 5 cut(s) 313, 326, 462, 526, 552
DpnI GATC 3 cut(s) 104, 608, 731
DpnII GATC 3 cut(s) 102, 606, 729
DraI TTTAAA 1 cut(s) 63
DriI GACNNNNNGTC 1 cut(s) 946
EaeI YGGCCR 5 cut(s) 615, 621, 652, 828, 1113
Eam1104I CTCTTC 1 cut(s) 401
Eam1105I GACNNNNNGTC 1 cut(s) 946
EarI CTCTTC 1 cut(s) 401
Ecl136II GAGCTC 4 cut(s) 319, 330, 535, 1168
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 5 cut(s) 321, 332, 537, 668, 1170
Eco47I GGWCC 2 cut(s) 194, 685
Eco53kI GAGCTC 4 cut(s) 319, 330, 535, 1168
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 1076
EcoICRI GAGCTC 4 cut(s) 319, 330, 535, 1168
EcoO109I RGGNCCY 1 cut(s) 685
EcoRI GAATTC 2 cut(s) 183, 855
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 570
EcoT22I ATGCAT 1 cut(s) 680
EcoT38I GRGCYC 5 cut(s) 321, 332, 537, 668, 1170
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 9 cut(s) 249, 481, 574, 606, 721, 745, 841, 1029, 1147
FaqI GGGAC 1 cut(s) 1093
FatI CATG 9 cut(s) 245, 477, 570, 602, 717, 741, 837, 1025, 1143
FauI CCCGC 1 cut(s) 527
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 6 cut(s) 27, 118, 576, 579, 582, 1018
FriOI GRGCYC 5 cut(s) 321, 332, 537, 668, 1170
Fsp4HI GCNGC 6 cut(s) 27, 118, 576, 579, 582, 1018
GlaI GCGC 1 cut(s) 1063
GluI GCNGC 6 cut(s) 27, 118, 576, 579, 582, 1018
GsaI CCCAGC 1 cut(s) 1068
HaeIII GGCC 8 cut(s) 39, 617, 623, 629, 654, 713, 830, 1115
HapII CCGG 7 cut(s) 375, 760, 770, 816, 831, 951, 1112
HgaI GACGC 2 cut(s) 397, 1138
HhaI GCGC 1 cut(s) 1064
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 9 cut(s) 249, 481, 574, 606, 721, 745, 841, 1029, 1147
Hin6I GCGC 1 cut(s) 1062
HinP1I GCGC 1 cut(s) 1062
HincII GTYRAC 2 cut(s) 546, 589
HindII GTYRAC 2 cut(s) 546, 589
HinfI GANTC 5 cut(s) 266, 888, 1072, 1108, 1121
HpaI GTTAAC 1 cut(s) 546
HpaII CCGG 7 cut(s) 375, 760, 770, 816, 831, 951, 1112
HphI GGTGA 4 cut(s) 16, 62, 490, 650
Hpy166II GTNNAC 4 cut(s) 459, 546, 589, 765
Hpy188I TCNGA 7 cut(s) 23, 93, 209, 555, 734, 887, 900
Hpy188III TCNNGA 5 cut(s) 718, 727, 838, 1078, 1144
Hpy8I GTNNAC 4 cut(s) 459, 546, 589, 765
Hpy99I CGWCG 3 cut(s) 113, 413, 596
HpyAV CCTTC 6 cut(s) 82, 207, 252, 345, 514, 724
HpyCH4III ACNGT 3 cut(s) 543, 644, 909
HpyCH4IV ACGT 3 cut(s) 594, 1012, 1082
HpyCH4V TGCA 7 cut(s) 167, 229, 602, 678, 765, 914, 977
HpyF10VI GCNNNNNNNGC 7 cut(s) 336, 345, 449, 575, 581, 710, 1138
HpyF3I CTNAG 5 cut(s) 313, 326, 462, 526, 552
HpySE526I ACGT 3 cut(s) 594, 1012, 1082
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 9 cut(s) 249, 481, 574, 606, 721, 745, 841, 1029, 1147
HspAI GCGC 1 cut(s) 1062
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 102
KspAI GTTAAC 1 cut(s) 546
Kzo9I GATC 3 cut(s) 102, 606, 729
LmnI GCTCC 7 cut(s) 335, 390, 440, 532, 772, 872, 1192
Lsp1109I GCAGC 3 cut(s) 38, 565, 568
LweI GCATC 4 cut(s) 38, 411, 531, 986
MaeII ACGT 3 cut(s) 594, 1012, 1082
MaeIII GTNAC 2 cut(s) 50, 638
MalI GATC 3 cut(s) 104, 608, 731
MboI GATC 3 cut(s) 102, 606, 729
MboII GAAGA 7 cut(s) 278, 388, 412, 466, 874, 950, 1081
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 8 cut(s) 254, 321, 332, 537, 668, 767, 1143, 1170
MlsI TGGCCA 1 cut(s) 654
MluCI AATT 5 cut(s) 183, 432, 849, 855, 894
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 2 cut(s) 882, 1130
MmeI TCCRAC 1 cut(s) 757
MnlI CCTC 6 cut(s) 155, 380, 404, 500, 698, 924
Mox20I TGGCCA 1 cut(s) 654
Mph1103I ATGCAT 1 cut(s) 680
MroNI GCCGGC 1 cut(s) 374
MroXI GAANNNNTTC 1 cut(s) 859
MscI TGGCCA 1 cut(s) 654
MseI TTAA 5 cut(s) 62, 545, 806, 812, 923
Msp20I TGGCCA 1 cut(s) 654
MspI CCGG 7 cut(s) 375, 760, 770, 816, 831, 951, 1112
MspR9I CCNGG 2 cut(s) 632, 832
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 632
MwoI GCNNNNNNNGC 7 cut(s) 336, 345, 449, 575, 581, 710, 1138
NaeI GCCGGC 1 cut(s) 376
NciI CCSGG 1 cut(s) 832
NcoI CCATGG 1 cut(s) 570
NdeII GATC 3 cut(s) 102, 606, 729
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 9 cut(s) 249, 481, 574, 606, 721, 745, 841, 1029, 1147
NlaIV GGNNCC 1 cut(s) 686
NmuCI GTSAC 2 cut(s) 50, 638
NsiI ATGCAT 1 cut(s) 680
PagI TCATGA 3 cut(s) 717, 837, 1143
PaqCI CACCTGC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PdiI GCCGGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 859
PfeI GAWTC 3 cut(s) 266, 1072, 1108
PflMI CCANNNNNTGG 1 cut(s) 747
PkrI GCNGC 6 cut(s) 28, 119, 577, 580, 583, 1019
PleI GAGTC 2 cut(s) 882, 1129
PpsI GAGTC 2 cut(s) 882, 1129
Ppu21I YACGTR 1 cut(s) 1013
PpuMI RGGWCCY 1 cut(s) 685
PshBI ATTAAT 1 cut(s) 923
PsiI TTATAA 1 cut(s) 1049
Psp124BI GAGCTC 4 cut(s) 321, 332, 537, 1170
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 1 cut(s) 630
PspFI CCCAGC 1 cut(s) 1064
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 1 cut(s) 686
PspPI GGNCC 3 cut(s) 194, 628, 685
PspPPI RGGWCCY 1 cut(s) 685
PsuI RGATCY 1 cut(s) 606
SacI GAGCTC 4 cut(s) 321, 332, 537, 1170
SaqAI TTAA 5 cut(s) 62, 545, 806, 812, 923
SatI GCNGC 6 cut(s) 27, 118, 576, 579, 582, 1018
Sau3AI GATC 3 cut(s) 102, 606, 729
Sau96I GGNCC 3 cut(s) 194, 628, 685
SchI GAGTC 2 cut(s) 882, 1130
ScrFI CCNGG 2 cut(s) 632, 832
SduI GDGCHC 8 cut(s) 254, 321, 332, 537, 668, 767, 1143, 1170
SfaNI GCATC 4 cut(s) 38, 411, 531, 986
SinI GGWCC 2 cut(s) 194, 685
Sse9I AATT 5 cut(s) 183, 432, 849, 855, 894
SsiI CCGC 8 cut(s) 118, 424, 501, 520, 530, 575, 965, 1017
SspI AATATT 1 cut(s) 261
SstI GAGCTC 4 cut(s) 321, 332, 537, 1170
StyD4I CCNGG 2 cut(s) 630, 830
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 3 cut(s) 543, 644, 909
TaiI ACGT 3 cut(s) 597, 1015, 1085
TaqI TCGA 2 cut(s) 321, 929
TasI AATT 5 cut(s) 183, 432, 849, 855, 894
TauI GCSGC 3 cut(s) 120, 578, 1020
TfiI GAWTC 3 cut(s) 266, 1072, 1108
Tru1I TTAA 5 cut(s) 62, 545, 806, 812, 923
Tru9I TTAA 5 cut(s) 62, 545, 806, 812, 923
TscAI CASTG 3 cut(s) 276, 649, 1060
TseFI GTSAC 2 cut(s) 50, 638
TseI GCWGC 3 cut(s) 26, 578, 581
Tsp45I GTSAC 2 cut(s) 50, 638
TspDTI ATGAA 7 cut(s) 234, 466, 706, 758, 826, 848, 1160
TspRI CASTG 3 cut(s) 276, 649, 1060
Van91I CCANNNNNTGG 1 cut(s) 747
VneI GTGCAC 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 194, 685
VspI ATTAAT 1 cut(s) 923
XapI RAATTY 2 cut(s) 183, 855
XmnI GAANNNNTTC 1 cut(s) 859
Zsp2I ATGCAT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.