Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8419643.1

Orthogroup ID

OG0002802

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1147

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8419643.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atggcactctccaccaccttcattacatgtccggtagtgatggccatttacagaccggcacgtggaatctctattcgcactcaccgcaaactttgtgatctctccacagctgatcaagccgccaaagacgagctccgaattcttgcatgtgttcatggtccaaacaatgcaccctcgctcataagcttaatagattcaattcgaagcaccaaaaaatcccaactcaaactcttcctaatgcaccttgttgaactcaccgagcgctcttcttcaatcgtgatggtccaacgggcccgaaaaaatgggtttcctttctttaatcgaacggctcgcggtgagtggtatgatagggtagctggggcattccaagcctatagtcaattgggccgagtcacggtccggcccacaactgcaatttctgctttgtccacaatgaatgaggatatttgccatgcggcggaagagaagagggcggcgatgatcgtcttgccattccacaagcaatggagatgtgatggtgatgatcatgagaaaaaagagattgatgtgggcaatgattggagaggggtcaaccaaagagtgctccaaaatgcgccgtgctcggttgcagtgcttgtggaccgtggatgtgataatttcaaaggccaaagtctcgagccggataaggttgtggccctaaggatttgtattgtgtttttgggtgggcctgatgatcgagaggccttggaattgggtggtcggatggctgaccacccagcggttaaagtgaaggttgtgaggttcgtcaagaaagaaggtctggagagtagtaatgggtctcatgggcttatgttaaagccttcacccaccaagtccaccgagaacaattgtagcttctccacagccataatggaccgagagaatgaaaaggaactagatgaggctgcagtggctgagttcaggagcaagttggtggaggatgggacggcagagtacactgagctagtggtggctaggaatattgtggagggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

337

Amino Acids

37.36

Weight (kDa)

8.04

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53720 AT3G53720
fragaria_vesca	FvH4_6g14141 FvH4_6g14141 FvH4_6g14150
malus_domestica	MD04G1124400.v1.1 MD04G1124500.v1.1 MD04G1124700.v1.1 MD12G1139700.v1.1
prunus_persica	Prupe.6G251600_v2.0.a1 Prupe.6G251700_v2.0.a1 Prupe.6G251700_v2.0.a1
pyrus_communis	pycom04g11220 pycom04g11230 pycom12g13420
rosa_chinensis	RchiOBHm_Chr3g0467061 RchiOBHm_Chr3g0467081 RchiOBHm_Chr3g0467091
rosa_laevigata	RLG00000024527 RLG00000024528 RLG00000024532
rosa_multiflora	Rmu_co8287377.1_g000001 Rmu_co8419643.1_g000001 Rmu_sc0012393.1_g000001 Rmu_ssc0000065.1_g000004
rosa_roxburghii	Rroxscaffold_6G00413900 Rroxscaffold_6G00413920
rosa_rugosa	Rorug03G0085100 Rorug03G0085400
rosa_samantha	Rh3AG133100 Rh3AG133400 Rh3BG154200 Rh3BG154600 Rh3CG154200 Rh3CG154300 Rh3DG155200 Rh3DG155400
rosa_wichuraiana	Rw3G012600 Rw3G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	333
AciI	CCGC	7 cut(s)	85, 120, 333, 455, 458, 473, 758
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	138
AcvI	CACGTG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	974
AfeI	AGCGCT	1 cut(s)	263
AfiI	CCNNNNNNNGG	4 cut(s)	62, 394, 457, 757
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	198, 251, 273, 640
AluBI	AGCT	6 cut(s)	110, 133, 186, 356, 873, 982
AluI	AGCT	6 cut(s)	110, 133, 186, 356, 873, 982
Alw21I	GWGCWC	3 cut(s)	135, 585, 602
Alw26I	GTCTC	2 cut(s)	656, 822
AlwNI	CAGNNNCTG	1 cut(s)	932
Ama87I	CYCGRG	1 cut(s)	653
Aor51HI	AGCGCT	1 cut(s)	263
AoxI	GGCC	8 cut(s)	42, 291, 385, 401, 643, 672, 704, 720
ApaI	GGGCCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	923
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	264, 595
AsuHPI	GGTGA	5 cut(s)	74, 247, 347, 530, 834
AsuII	TTCGAA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	653
AvaII	GGWCC	5 cut(s)	158, 283, 397, 619, 892
AxyI	CCTNAGG	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	135, 295
BbrPI	CACGTG	1 cut(s)	62
Bbv12I	GWGCWC	3 cut(s)	135, 585, 602
BbvI	GCAGC	1 cut(s)	910
BccI	CCATC	5 cut(s)	34, 274, 509, 736, 953
BceAI	ACGGC	3 cut(s)	342, 580, 981
BclI	TGATCA	2 cut(s)	112, 523
BcoDI	GTCTC	2 cut(s)	656, 822
BfaI	CTAG	3 cut(s)	914, 983, 993
BfmI	CTRYAG	2 cut(s)	373, 924
BfoI	RGCGCY	1 cut(s)	265
BisI	GCNGC	4 cut(s)	120, 456, 474, 924
BlsI	GCNGC	4 cut(s)	121, 457, 475, 925
Bme18I	GGWCC	5 cut(s)	158, 283, 397, 619, 892
BmeT110I	CYCGRG	1 cut(s)	653
BmiI	GGNNCC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	821
Bpu14I	TTCGAA	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	2 cut(s)	622, 723
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 394, 457, 757
Bse118I	RCCGGY	1 cut(s)	55
Bse21I	CCTNAGG	1 cut(s)	677
Bse3DI	GCAATG	2 cut(s)	509, 559
BseDI	CCNNGG	2 cut(s)	622, 723
BseGI	GGATG	3 cut(s)	632, 747, 964
BseLI	CCNNNNNNNGG	4 cut(s)	62, 394, 457, 757
BseMI	GCAATG	2 cut(s)	509, 559
BseMII	CTCAG	2 cut(s)	924, 969
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	910
BseYI	CCCAGC	2 cut(s)	356, 754
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	8 cut(s)	44, 293, 387, 403, 645, 674, 706, 722
BsiHKAI	GWGCWC	3 cut(s)	135, 585, 602
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	4 cut(s)	32, 56, 400, 659
BslFI	GGGAC	1 cut(s)	976
BslI	CCNNNNNNNGG	4 cut(s)	62, 394, 457, 757
BsmAI	GTCTC	2 cut(s)	656, 822
BsmFI	GGGAC	1 cut(s)	976
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	8 cut(s)	44, 293, 387, 403, 645, 674, 706, 722
Bso31I	GGTCTC	1 cut(s)	822
BsoBI	CYCGRG	1 cut(s)	653
Bsp119I	TTCGAA	1 cut(s)	202
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	4 cut(s)	135, 295, 585, 602
Bsp143I	GATC	5 cut(s)	97, 112, 480, 523, 712
BspACI	CCGC	7 cut(s)	85, 120, 333, 455, 458, 473, 758
BspANI	GGCC	8 cut(s)	44, 293, 387, 403, 645, 674, 706, 722
BspCNI	CTCAG	2 cut(s)	925, 970
BspFNI	CGCG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	293
BspMAI	CTGCAG	1 cut(s)	928
BspQI	GCTCTTC	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	822
BsrDI	GCAATG	2 cut(s)	509, 559
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	622, 723
BssMI	GATC	5 cut(s)	97, 112, 480, 523, 712
BssT1I	CCWWGG	1 cut(s)	723
Bst4CI	ACNGT	2 cut(s)	397, 623
Bst6I	CTCTTC	4 cut(s)	236, 271, 456, 461
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	3 cut(s)	677, 933, 978
BstDSI	CCRYGG	1 cut(s)	622
BstF5I	GGATG	3 cut(s)	632, 747, 964
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	264, 595
BstKTI	GATC	5 cut(s)	100, 115, 483, 526, 715
BstMAI	GTCTC	2 cut(s)	656, 822
BstMBI	GATC	5 cut(s)	97, 112, 480, 523, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 116, 368, 419, 929
BstNSI	RCATGY	2 cut(s)	30, 150
BstSFI	CTRYAG	2 cut(s)	373, 924
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	910
Bsu36I	CCTNAGG	1 cut(s)	677
BsuRI	GGCC	8 cut(s)	44, 293, 387, 403, 645, 674, 706, 722
BtgI	CCRYGG	1 cut(s)	622
BtgZI	GCGATG	1 cut(s)	491
BtsCI	GGATG	3 cut(s)	632, 747, 964
BtsI	GCAGTG	2 cut(s)	615, 933
BtsIMutI	CAGTG	3 cut(s)	615, 933, 975
Cac8I	GCNNGC	1 cut(s)	331
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	2 cut(s)	264, 595
Cfr10I	RCCGGY	1 cut(s)	55
CpoI	CGGWCCG	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	973
CspI	CGGWCCG	1 cut(s)	397
CviAII	CATG	6 cut(s)	27, 147, 155, 452, 527, 821
CviQI	GTAC	1 cut(s)	973
DdeI	CTNAG	3 cut(s)	677, 933, 978
DpnI	GATC	5 cut(s)	99, 114, 482, 525, 714
DpnII	GATC	5 cut(s)	97, 112, 480, 523, 712
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	4 cut(s)	236, 271, 456, 461
EarI	CTCTTC	4 cut(s)	236, 271, 456, 461
EciI	GGCGGA	1 cut(s)	473
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	723
Eco147I	AGGCCT	1 cut(s)	722
Eco24I	GRGCYC	2 cut(s)	135, 295
Eco31I	GGTCTC	1 cut(s)	822
Eco47I	GGWCC	5 cut(s)	158, 283, 397, 619, 892
Eco47III	AGCGCT	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	133
Eco72I	CACGTG	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	677
Eco88I	CYCGRG	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	723
EcoT38I	GRGCYC	2 cut(s)	135, 295
ErhI	CCWWGG	1 cut(s)	723
FaeI	CATG	6 cut(s)	30, 150, 158, 455, 530, 824
FaqI	GGGAC	1 cut(s)	976
FatI	CATG	6 cut(s)	26, 146, 154, 451, 526, 820
FbaI	TGATCA	2 cut(s)	112, 523
Fnu4HI	GCNGC	4 cut(s)	120, 456, 474, 924
FokI	GGATG	3 cut(s)	639, 754, 971
FriOI	GRGCYC	2 cut(s)	135, 295
Fsp4HI	GCNGC	4 cut(s)	120, 456, 474, 924
FspBI	CTAG	3 cut(s)	914, 983, 993
GlaI	GCGC	2 cut(s)	263, 594
GluI	GCNGC	4 cut(s)	120, 456, 474, 924
GsaI	CCCAGC	2 cut(s)	360, 758
GsuI	CTGGAG	1 cut(s)	821
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	8 cut(s)	44, 293, 387, 403, 645, 674, 706, 722
HapII	CCGG	4 cut(s)	32, 56, 400, 659
HhaI	GCGC	2 cut(s)	264, 595
Hin1II	CATG	6 cut(s)	30, 150, 158, 455, 530, 824
Hin6I	GCGC	2 cut(s)	262, 593
HinP1I	GCGC	2 cut(s)	262, 593
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	3 cut(s)	66, 194, 390
HpaII	CCGG	4 cut(s)	32, 56, 400, 659
HphI	GGTGA	5 cut(s)	74, 247, 347, 530, 834
Hpy166II	GTNNAC	5 cut(s)	429, 571, 619, 855, 975
Hpy188I	TCNGA	2 cut(s)	137, 741
Hpy188III	TCNNGA	7 cut(s)	277, 527, 653, 716, 787, 800, 940
Hpy8I	GTNNAC	5 cut(s)	429, 571, 619, 855, 975
HpyAV	CCTTC	4 cut(s)	28, 763, 788, 849
HpyCH4III	ACNGT	2 cut(s)	397, 623
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	6 cut(s)	146, 170, 241, 413, 608, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 116, 368, 419, 929
HpyF3I	CTNAG	3 cut(s)	677, 933, 978
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	6 cut(s)	30, 150, 158, 455, 530, 824
HspAI	GCGC	2 cut(s)	262, 593
Ksp22I	TGATCA	2 cut(s)	112, 523
Kzo9I	GATC	5 cut(s)	97, 112, 480, 523, 712
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	3 cut(s)	138, 588, 942
LpnPI	CCDG	9 cut(s)	45, 69, 342, 413, 672, 720, 768, 785, 925
Lsp1109I	GCAGC	1 cut(s)	910
MaeI	CTAG	3 cut(s)	914, 983, 993
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	5 cut(s)	99, 114, 482, 525, 714
MboI	GATC	5 cut(s)	97, 112, 480, 523, 712
MboII	GAAGA	5 cut(s)	223, 258, 261, 473, 478
MfeI	CAATTG	2 cut(s)	380, 865
MhlI	GDGCHC	4 cut(s)	135, 295, 585, 602
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	7 cut(s)	138, 198, 380, 414, 634, 728, 865
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	2 cut(s)	310, 719
MnlI	CCTC	9 cut(s)	184, 433, 462, 557, 712, 771, 913, 949, 1000
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	4 cut(s)	188, 318, 762, 833
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	2 cut(s)	110, 758
MspI	CCGG	4 cut(s)	32, 56, 400, 659
MunI	CAATTG	2 cut(s)	380, 865
Mva1269I	GAATGC	1 cut(s)	362
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	84, 116, 368, 419, 929
NdeII	GATC	5 cut(s)	97, 112, 480, 523, 712
NlaIII	CATG	6 cut(s)	30, 150, 158, 455, 530, 824
NlaIV	GGNNCC	1 cut(s)	293
NmeAIII	GCCGAG	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	2 cut(s)	30, 150
NspV	TTCGAA	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	653
PagI	TCATGA	1 cut(s)	526
PceI	AGGCCT	1 cut(s)	722
PciI	ACATGT	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	271
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	66, 194
PkrI	GCNGC	4 cut(s)	121, 457, 475, 925
PleI	GAGTC	1 cut(s)	398
PmaCI	CACGTG	1 cut(s)	62
PmlI	CACGTG	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	62
PscI	ACATGT	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	135
PspCI	CACGTG	1 cut(s)	62
PspFI	CCCAGC	2 cut(s)	356, 754
PspN4I	GGNNCC	1 cut(s)	293
PspOMI	GGGCCC	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	932
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	974
RsaNI	GTAC	1 cut(s)	973
Rsr2I	CGGWCCG	1 cut(s)	397
RsrII	CGGWCCG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	4 cut(s)	188, 318, 762, 833
SatI	GCNGC	4 cut(s)	120, 456, 474, 924
Sau3AI	GATC	5 cut(s)	97, 112, 480, 523, 712
SchI	GAGTC	1 cut(s)	399
SduI	GDGCHC	4 cut(s)	135, 295, 585, 602
SfcI	CTRYAG	2 cut(s)	373, 924
Sfr274I	CTCGAG	1 cut(s)	653
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	5 cut(s)	158, 283, 397, 619, 892
SlaI	CTCGAG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	7 cut(s)	138, 198, 380, 414, 634, 728, 865
SseBI	AGGCCT	1 cut(s)	722
SsiI	CCGC	7 cut(s)	85, 120, 333, 455, 458, 473, 758
SspI	AATATT	1 cut(s)	1000
SspMI	CTAG	3 cut(s)	914, 983, 993
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	722
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	2 cut(s)	397, 623
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	4 cut(s)	202, 322, 654, 715
TaqII	GACCGA	1 cut(s)	909
TasI	AATT	7 cut(s)	138, 198, 380, 414, 634, 728, 865
TatI	WGTACW	1 cut(s)	972
TauI	GCSGC	3 cut(s)	122, 458, 476
TfiI	GAWTC	2 cut(s)	66, 194
Tru1I	TTAA	4 cut(s)	188, 318, 762, 833
Tru9I	TTAA	4 cut(s)	188, 318, 762, 833
TscAI	CASTG	3 cut(s)	615, 933, 982
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	923
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	4 cut(s)	10, 143, 449, 918
TspRI	CASTG	3 cut(s)	615, 933, 982
VpaK11BI	GGWCC	5 cut(s)	158, 283, 397, 619, 892
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	2 cut(s)	30, 150
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XhoI	CTCGAG	1 cut(s)	653
XspI	CTAG	3 cut(s)	914, 983, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.