RchiOBHm_Chr3g0473201

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001542
Physical Location & Seq
Reverse (-)
19140802 .. 19143247
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43888

Sequence Viewer

Length: 2151 bp
ATGATTCCATTTTCATGTAGAAATGTAAAGCTTTTCCCAGAAAATTTCATTTGCACCCCTTTCTTTATGAATTTTCAACCCTTGCGCCTTTTTGGCGGCCAAATTCTGAAAGAGGAGTCGACCACCTTGGCCCAAGTCATCCAAAGCTACGCAAAAACCAAGCAGCTAAACAAAGGCAAAGAGCTCCACGCTCACCTCCTACGCACTCATTACCCACTATGCATTTTCCTCACCAACCACCTCCTCAACATGTACTCCAAATGCGGGCACGTCGATTATGCCCTCAAGGTTTTCGACCAAATGCCTCACCGAAACTTGGTTTCCTGGACTGCAATGGTCACTGGGTTTTCTCAGAACTTGAGGTTCTCCGAGAGTTTCAAGGCCTTTTCCCAGATGAGAATTGCTGGGGAGAGCCCGACCCAGTTTGCATTTGCAAGTGTCATCAGCGCTTGTGTGGTTCTTGGGTCGGTTGAGATTGGGAGGCAGCTGCATTCTCTTGCTTTGAAATTGGGCTTGGCTTGTGAGCTGTTTGTGGGTAGTAACTTGGCGGATATGTATTCGAAATGTGGGTTCATGGTTGAGGCTTGTAAGGTTTTCGAGGAAATGCCGAGTAAGGATGCTGTATCGTGGACTTCGATGATTGATGGGTATGCAAAGAGTGGGGATTTTGAGGCAGCTTTACTGACTTATAAGAGGATGGTTAGTGATGGGATTGGTATAGATAAACATGTTGTTTCTAGTGCATTGAGTGCTTGTTCTGCACTGGAGGCTTGTCAGTTTGGAAAGTGTGTCCATTCGACAGGTGTGAAGTTGGGATTGGAAGTAGAGGTTGCTGTGGGAAATGCTCTGGTTGATGTGTACTCGAAATCAGGTGATATGGAGAGTGCTTTAAATGTGTTTCGGGTTGACCCTGAGTGCAGAAATATTGTGTCGTATTCCTCTCTGATCAATGGTTATGTTGTGATGGATAAAATCGAGAAGGCTTTTAGTGTGTTTGTTGACTTACAGAGAAGGGGAGCTGAGCCTAATCAGTTCACTTTCTCTAGCTTGATCAAGGCTTGTGCCAACCAAGCTGCACTTGAACAAGGGATCCAACTTCATGCTCAGGTGGTCAAGTTTAATTTTGACAGAGATGATTTTGTGTCTTCTGTTCTTGTTGATATGTATGGGAGATGTGGGTTACTTGATCATTCAATACAAGTTTTTGACGAGGTACCCACCCCAACTGAAGTTGCGTGGAATTCATTGCTAAGTGTATTTGCAGTTCACGGCTTAGGAAATGACGCCTTGAAAACTTTTAGTAGAATGGTCCAGGCAGGAGTGAAACCAAATGCAATAACATTTATCAGTCTTTTAACAGGCTGTAGCCATTCTGGATTGGTAGAGGAAGGTTTAAAGTACTTTTACTCTCTGGAGAAAACATATGGCATAGTACCTAGAGCTGGACATTACTCTTGCGTTATTGATTTACTTGGCAGGGCTGGAAGGCTTGAAGAGGCCGAAGAATTCATTAACAGCATGCCAATGCAGCCAAATGCTTTTGGATGGTGCTCTTTTCTTGGTGCTTGCACAATTCATGGTGATAAAGAGAGGGGCAAACTGGCAGCGGAGAAATTGATACAGCTTGAACCTGAGAATAGTGGAGCACATGTGTTGCTTTCAACTATATATGCAAAGGAGCAGAAATGGGAAGATTTCAGGGGTGTGAGGAGGATAATGAGGGACAGCAGCATGAAGAAATTGCCCGGTTATAGTTGGATTGACATTGGAAACAAAACACACACATTTGGAGCCGAAGATTGGTCTCATCCTCAGAAGAAAGAAATATATGAGAAGCTTGATAGTCTTCTTGATCAGATAAAGAAAGCTGGATATGTTCCAAATACAGATCTTGTTCTTCGTGATATGGACGACAATTCAAAGGTAGAGCTTCTTCACCATCATAGTGAGAGGATAGCGATTGCATTTGCAATGATAAGTATGCCTGCTGGGAAGCCAATCATTGTGAAGAAAAATATAAGGGTGTGCTTGGATTGCCATTCTGCAATCAAGTACATCTCCTTGGTTGTTGGAAGAAAGATTATTGTTAGGGATAATACTCGGTTTCACCATTTCGCAGATGGGTTGTGTTCATGTGGAGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

716

Amino Acids

79.8

Weight (kDa)

7.08

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 206 - 252 4.8e-07 PPR repeat family
PPR PF01535 208 - 238 2.7e-08 PPR repeat
PPR_2 PF13041 307 - 356 6.1e-14 PPR repeat family
PPR_3 PF13812 308 - 356 4.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 408 - 456 5.6e-11 PPR repeat family
E_motif PF20431 526 - 588 1.3e-17 E motif
Eplus_motif PF20430 593 - 620 1.6e-09 E+ motif
DYW_deaminase PF14432 624 - 716 9.4e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 690
Acc65I GGTACC 1 cut(s) 1213
AccB1I GGYRCC 1 cut(s) 1213
AccI GTMKAC 1 cut(s) 119
AciI CCGC 4 cut(s) 96, 264, 548, 1607
AclWI GGATC 2 cut(s) 1084, 1097
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 5 cut(s) 43, 70, 102, 1240, 1505
AcuI CTGAAG 1 cut(s) 1248
AcyI GRCGYC 1 cut(s) 1284
AfaI GTAC 6 cut(s) 254, 860, 1215, 1400, 1434, 2054
AfeI AGCGCT 1 cut(s) 448
AfiI CCNNNNNNNGG 4 cut(s) 264, 316, 1442, 1800
AflIII ACRYGT 3 cut(s) 249, 727, 1648
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 323, 1311
AjuI GAANNNNNNNTTGG 4 cut(s) 497, 529, 800, 832
AloI GAACNNNNNNTCC 2 cut(s) 1074, 1106
Alw21I GWGCWC 3 cut(s) 186, 1553, 1648
Alw26I GTCTC 1 cut(s) 1809
AlwI GGATC 2 cut(s) 1084, 1097
Aor51HI AGCGCT 1 cut(s) 448
AoxI GGCC 4 cut(s) 97, 129, 381, 1497
ApeKI GCWGC 8 cut(s) 163, 484, 487, 674, 1073, 1528, 1604, 1728
ApoI RAATTY 5 cut(s) 43, 70, 102, 1240, 1505
Asp718I GGTACC 1 cut(s) 1213
AspLEI GCGC 2 cut(s) 87, 449
AspS9I GGNCC 2 cut(s) 130, 1309
AsuC2I CCSGG 1 cut(s) 1746
AsuHPI GGTGA 7 cut(s) 185, 223, 299, 884, 1592, 1928, 2099
AsuII TTCGAA 1 cut(s) 560
AvaII GGWCC 1 cut(s) 1309
BaeGI GKGCMC 1 cut(s) 270
BamHI GGATCC 1 cut(s) 1089
BanI GGYRCC 1 cut(s) 1213
BanII GRGCYC 2 cut(s) 186, 416
BarI GAAGNNNNNNTAC 2 cut(s) 1917, 1949
BbsI GAAGAC 2 cut(s) 1137, 1838
Bbv12I GWGCWC 3 cut(s) 186, 1553, 1648
BbvI GCAGC 8 cut(s) 175, 474, 496, 686, 1060, 1540, 1616, 1740
BccI CCATC 7 cut(s) 638, 691, 701, 958, 1539, 1947, 2114
BceAI ACGGC 1 cut(s) 1285
BciT130I CCWGG 2 cut(s) 325, 1313
BclI TGATCA 4 cut(s) 945, 1050, 1186, 1852
BcnI CCSGG 1 cut(s) 1746
BcoDI GTCTC 1 cut(s) 1809
BfaI CTAG 3 cut(s) 738, 1044, 1437
BfmI CTRYAG 1 cut(s) 1363
BfoI RGCGCY 1 cut(s) 450
BglI GCCNNNNNGGC 1 cut(s) 93
BglII AGATCT 1 cut(s) 1888
BisI GCNGC 9 cut(s) 97, 164, 485, 488, 675, 1074, 1529, 1605, 1729
BlpI GCTNAGC 1 cut(s) 1020
BlsI GCNGC 9 cut(s) 98, 165, 486, 489, 676, 1075, 1530, 1606, 1730
BmcAI AGTACT 1 cut(s) 1400
Bme1390I CCNGG 3 cut(s) 325, 1313, 1746
Bme18I GGWCC 1 cut(s) 1309
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 130, 1309
BmiI GGNNCC 3 cut(s) 1091, 1215, 1792
BmrFI CCNGG 3 cut(s) 325, 1313, 1746
BmrI ACTGGG 2 cut(s) 351, 415
BmsI GCATC 1 cut(s) 607
BmuI ACTGGG 2 cut(s) 351, 415
BpiI GAAGAC 2 cut(s) 1137, 1838
BpmI CTGGAG 2 cut(s) 785, 1433
Bpu10I CCTNAGC 2 cut(s) 1104, 1273
Bpu1102I GCTNAGC 1 cut(s) 1020
Bpu14I TTCGAA 1 cut(s) 560
BpuEI CTTGAG 2 cut(s) 269, 379
BpuMI CCSGG 1 cut(s) 1746
BsaHI GRCGYC 1 cut(s) 1284
BsaI GGTCTC 1 cut(s) 1809
BsaJI CCNNGG 2 cut(s) 126, 2061
BsaXI ACNNNNNCTCC 4 cut(s) 239, 269, 1635, 1665
Bsc4I CCNNNNNNNGG 4 cut(s) 264, 316, 1442, 1800
Bse1I ACTGG 5 cut(s) 346, 421, 768, 1605, 2150
Bse3DI GCAATG 3 cut(s) 339, 1244, 1977
BseBI CCWGG 2 cut(s) 325, 1313
BseDI CCNNGG 2 cut(s) 126, 2061
BseGI GGATG 5 cut(s) 138, 622, 702, 1550, 1807
BseLI CCNNNNNNNGG 4 cut(s) 264, 316, 1442, 1800
BseMI GCAATG 3 cut(s) 339, 1244, 1977
BseMII CTCAG 6 cut(s) 365, 903, 1011, 1118, 1623, 1826
BseNI ACTGG 5 cut(s) 346, 421, 768, 1605, 2150
BseRI GAGGAG 3 cut(s) 128, 233, 1723
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 8 cut(s) 175, 474, 496, 686, 1060, 1540, 1616, 1740
BseYI CCCAGC 2 cut(s) 404, 1988
BsgI GTGCAG 3 cut(s) 744, 937, 1059
BshFI GGCC 4 cut(s) 99, 131, 383, 1499
BshNI GGYRCC 1 cut(s) 1213
BsiHKAI GWGCWC 3 cut(s) 186, 1553, 1648
BsiSI CCGG 1 cut(s) 1746
BslFI GGGAC 1 cut(s) 1736
BslI CCNNNNNNNGG 4 cut(s) 264, 316, 1442, 1800
BsmAI GTCTC 1 cut(s) 1809
BsmFI GGGAC 1 cut(s) 1736
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 4 cut(s) 99, 131, 383, 1499
Bso31I GGTCTC 1 cut(s) 1809
Bsp119I TTCGAA 1 cut(s) 560
Bsp1286I GDGCHC 5 cut(s) 186, 270, 416, 1553, 1648
Bsp143I GATC 6 cut(s) 945, 1050, 1089, 1186, 1852, 1888
Bsp1720I GCTNAGC 1 cut(s) 1020
BspACI CCGC 4 cut(s) 96, 264, 548, 1607
BspANI GGCC 4 cut(s) 99, 131, 383, 1499
BspCNI CTCAG 6 cut(s) 364, 904, 1012, 1117, 1624, 1825
BspLI GGNNCC 3 cut(s) 1091, 1215, 1792
BspPI GGATC 2 cut(s) 1084, 1097
BspT104I TTCGAA 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 1213
BspTNI GGTCTC 1 cut(s) 1809
BsrDI GCAATG 3 cut(s) 339, 1244, 1977
BsrI ACTGG 5 cut(s) 346, 421, 768, 1605, 2150
BssECI CCNNGG 2 cut(s) 126, 2061
BssMI GATC 6 cut(s) 945, 1050, 1089, 1186, 1852, 1888
BssNI GRCGYC 1 cut(s) 1284
BssT1I CCWWGG 2 cut(s) 126, 2061
Bst2UI CCWGG 2 cut(s) 325, 1313
Bst6I CTCTTC 1 cut(s) 1488
BstACI GRCGYC 1 cut(s) 1284
BstAPI GCANNNNNTGC 1 cut(s) 749
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 4 cut(s) 266, 1520, 1567, 1986
BstDEI CTNAG 8 cut(s) 351, 912, 1020, 1104, 1250, 1273, 1632, 1812
BstF5I GGATG 5 cut(s) 138, 622, 702, 1550, 1807
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 2 cut(s) 87, 449
BstKTI GATC 6 cut(s) 948, 1053, 1092, 1189, 1855, 1891
BstMAI GTCTC 1 cut(s) 1809
BstMBI GATC 6 cut(s) 945, 1050, 1089, 1186, 1852, 1888
BstMWI GCNNNNNNNGC 7 cut(s) 93, 749, 758, 767, 1070, 1528, 2034
BstNI CCWGG 2 cut(s) 325, 1313
BstNSI RCATGY 4 cut(s) 253, 731, 1522, 1652
BstSCI CCNGG 3 cut(s) 323, 1311, 1744
BstSFI CTRYAG 1 cut(s) 1363
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 8 cut(s) 175, 474, 496, 686, 1060, 1540, 1616, 1740
BstV2I GAAGAC 2 cut(s) 1137, 1838
BstX2I RGATCY 2 cut(s) 1089, 1888
BstYI RGATCY 2 cut(s) 1089, 1888
BsuRI GGCC 4 cut(s) 99, 131, 383, 1499
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 5 cut(s) 138, 622, 702, 1550, 1807
BtsIMutI CAGTG 2 cut(s) 339, 761
Cac8I GCNNGC 4 cut(s) 266, 1520, 1567, 1986
CfoI GCGC 2 cut(s) 87, 449
Cfr13I GGNCC 2 cut(s) 130, 1309
CseI GACGC 1 cut(s) 1292
Csp6I GTAC 6 cut(s) 253, 859, 1214, 1399, 1433, 2053
CviQI GTAC 6 cut(s) 253, 859, 1214, 1399, 1433, 2053
DdeI CTNAG 8 cut(s) 351, 912, 1020, 1104, 1250, 1273, 1632, 1812
DpnI GATC 6 cut(s) 947, 1052, 1091, 1188, 1854, 1890
DpnII GATC 6 cut(s) 945, 1050, 1089, 1186, 1852, 1888
DraI TTTAAA 2 cut(s) 891, 1395
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 1488
EarI CTCTTC 1 cut(s) 1488
EciI GGCGGA 1 cut(s) 563
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 2 cut(s) 126, 2061
Eco147I AGGCCT 1 cut(s) 383
Eco24I GRGCYC 2 cut(s) 186, 416
Eco31I GGTCTC 1 cut(s) 1809
Eco47I GGWCC 1 cut(s) 1309
Eco47III AGCGCT 1 cut(s) 448
Eco53kI GAGCTC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 1248
EcoICRI GAGCTC 1 cut(s) 184
EcoRI GAATTC 2 cut(s) 1240, 1505
EcoRII CCWGG 2 cut(s) 323, 1311
EcoT14I CCWWGG 2 cut(s) 126, 2061
EcoT22I ATGCAT 1 cut(s) 224
EcoT38I GRGCYC 2 cut(s) 186, 416
ErhI CCWWGG 2 cut(s) 126, 2061
FalI AAGNNNNNCTT 2 cut(s) 1062, 1094
FaqI GGGAC 1 cut(s) 1736
FauI CCCGC 1 cut(s) 257
FauNDI CATATG 1 cut(s) 1423
FbaI TGATCA 4 cut(s) 945, 1050, 1186, 1852
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 9 cut(s) 97, 164, 485, 488, 675, 1074, 1529, 1605, 1729
FokI GGATG 5 cut(s) 125, 629, 709, 1557, 1794
FriOI GRGCYC 2 cut(s) 186, 416
Fsp4HI GCNGC 9 cut(s) 97, 164, 485, 488, 675, 1074, 1529, 1605, 1729
FspBI CTAG 3 cut(s) 738, 1044, 1437
GlaI GCGC 2 cut(s) 86, 448
GluI GCNGC 9 cut(s) 97, 164, 485, 488, 675, 1074, 1529, 1605, 1729
GsaI CCCAGC 2 cut(s) 408, 1992
GsuI CTGGAG 2 cut(s) 785, 1433
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 4 cut(s) 99, 131, 383, 1499
HapII CCGG 1 cut(s) 1746
HgaI GACGC 1 cut(s) 1292
HhaI GCGC 2 cut(s) 87, 449
Hin1I GRCGYC 1 cut(s) 1284
Hin6I GCGC 2 cut(s) 85, 447
HinP1I GCGC 2 cut(s) 85, 447
HincII GTYRAC 3 cut(s) 120, 907, 1000
HindII GTYRAC 3 cut(s) 120, 907, 1000
HindIII AAGCTT 2 cut(s) 29, 1835
HinfI GANTC 2 cut(s) 4, 116
HpaII CCGG 1 cut(s) 1746
HphI GGTGA 7 cut(s) 185, 223, 299, 884, 1592, 1928, 2099
Hpy166II GTNNAC 7 cut(s) 120, 630, 859, 907, 1000, 1035, 1267
Hpy188I TCNGA 6 cut(s) 108, 354, 370, 945, 1815, 1857
Hpy188III TCNNGA 5 cut(s) 976, 1374, 1412, 1850, 1901
Hpy8I GTNNAC 7 cut(s) 120, 630, 859, 907, 1000, 1035, 1267
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 4 cut(s) 973, 1005, 1382, 1479
HpyCH4IV ACGT 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 7 cut(s) 93, 749, 758, 767, 1070, 1528, 2034
HpyF3I CTNAG 8 cut(s) 351, 912, 1020, 1104, 1250, 1273, 1632, 1812
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 1284
HspAI GCGC 2 cut(s) 85, 447
KpnI GGTACC 1 cut(s) 1217
Ksp22I TGATCA 4 cut(s) 945, 1050, 1186, 1852
Kzo9I GATC 6 cut(s) 945, 1050, 1089, 1186, 1852, 1888
LmnI GCTCC 5 cut(s) 189, 1016, 1643, 1678, 1790
Lsp1109I GCAGC 8 cut(s) 175, 474, 496, 686, 1060, 1540, 1616, 1740
LweI GCATC 1 cut(s) 607
MaeI CTAG 3 cut(s) 738, 1044, 1437
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 3 cut(s) 337, 539, 1179
MalI GATC 6 cut(s) 947, 1052, 1091, 1188, 1854, 1890
MboI GATC 6 cut(s) 945, 1050, 1089, 1186, 1852, 1888
MflI RGATCY 2 cut(s) 1089, 1888
MhlI GDGCHC 5 cut(s) 186, 270, 416, 1553, 1648
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 3 cut(s) 1117, 1736, 2050
Mph1103I ATGCAT 1 cut(s) 224
MseI TTAA 5 cut(s) 890, 1119, 1355, 1394, 1512
MslI CAYNNNNRTG 3 cut(s) 13, 1523, 1944
MspA1I CMGCKG 2 cut(s) 487, 1607
MspI CCGG 1 cut(s) 1746
MspR9I CCNGG 3 cut(s) 325, 1313, 1746
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 2 cut(s) 325, 1313
MwoI GCNNNNNNNGC 7 cut(s) 93, 749, 758, 767, 1070, 1528, 2034
NciI CCSGG 1 cut(s) 1746
NdeI CATATG 1 cut(s) 1423
NdeII GATC 6 cut(s) 945, 1050, 1089, 1186, 1852, 1888
NlaIV GGNNCC 3 cut(s) 1091, 1215, 1792
NmeAIII GCCGAG 1 cut(s) 633
NmuCI GTSAC 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 4 cut(s) 253, 731, 1522, 1652
NspV TTCGAA 1 cut(s) 560
PaeI GCATGC 1 cut(s) 1522
PceI AGGCCT 1 cut(s) 383
PciI ACATGT 3 cut(s) 249, 727, 1648
PcsI WCGNNNNNNNCGW 1 cut(s) 632
PctI GAATGC 1 cut(s) 490
PfeI GAWTC 1 cut(s) 4
PfoI TCCNGGA 1 cut(s) 323
PkrI GCNGC 9 cut(s) 98, 165, 486, 489, 676, 1075, 1530, 1606, 1730
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PscI ACATGT 3 cut(s) 249, 727, 1648
PsiI TTATAA 1 cut(s) 690
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 323, 1311
PspFI CCCAGC 2 cut(s) 404, 1988
PspGI CCWGG 2 cut(s) 323, 1311
PspN4I GGNNCC 3 cut(s) 1091, 1215, 1792
PspPI GGNCC 2 cut(s) 130, 1309
PsrI GAACNNNNNNTAC 2 cut(s) 1248, 1280
PsuI RGATCY 2 cut(s) 1089, 1888
PvuII CAGCTG 1 cut(s) 487
RsaI GTAC 6 cut(s) 254, 860, 1215, 1400, 1434, 2054
RsaNI GTAC 6 cut(s) 253, 859, 1214, 1399, 1433, 2053
RseI CAYNNNNRTG 3 cut(s) 13, 1523, 1944
SacI GAGCTC 1 cut(s) 186
SalI GTCGAC 1 cut(s) 118
SaqAI TTAA 5 cut(s) 890, 1119, 1355, 1394, 1512
SatI GCNGC 9 cut(s) 97, 164, 485, 488, 675, 1074, 1529, 1605, 1729
Sau3AI GATC 6 cut(s) 945, 1050, 1089, 1186, 1852, 1888
Sau96I GGNCC 2 cut(s) 130, 1309
ScaI AGTACT 1 cut(s) 1400
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 3 cut(s) 325, 1313, 1746
SduI GDGCHC 5 cut(s) 186, 270, 416, 1553, 1648
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 1 cut(s) 1363
SfuI TTCGAA 1 cut(s) 560
SinI GGWCC 1 cut(s) 1309
SmiMI CAYNNNNRTG 3 cut(s) 13, 1523, 1944
SmlI CTYRAG 2 cut(s) 284, 358
SmoI CTYRAG 2 cut(s) 284, 358
SphI GCATGC 1 cut(s) 1522
SseBI AGGCCT 1 cut(s) 383
SsiI CCGC 4 cut(s) 96, 264, 548, 1607
SspI AATATT 1 cut(s) 925
SspMI CTAG 3 cut(s) 738, 1044, 1437
SstI GAGCTC 1 cut(s) 186
StuI AGGCCT 1 cut(s) 383
StyD4I CCNGG 3 cut(s) 323, 1311, 1744
StyI CCWWGG 2 cut(s) 126, 2061
TaiI ACGT 1 cut(s) 273
TaqI TCGA 9 cut(s) 119, 273, 294, 560, 597, 635, 797, 863, 975
TatI WGTACW 4 cut(s) 252, 858, 1398, 2052
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 5 cut(s) 890, 1119, 1355, 1394, 1512
Tru9I TTAA 5 cut(s) 890, 1119, 1355, 1394, 1512
TscAI CASTG 2 cut(s) 346, 768
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 8 cut(s) 163, 484, 487, 674, 1073, 1528, 1604, 1728
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 9 cut(s) 37, 83, 562, 1088, 1233, 1498, 1565, 1748, 2121
TspRI CASTG 2 cut(s) 346, 768
VpaK11BI GGWCC 1 cut(s) 1309
XapI RAATTY 5 cut(s) 43, 70, 102, 1240, 1505
XceI RCATGY 4 cut(s) 253, 731, 1522, 1652
XcmI CCANNNNNNNNNTGG 1 cut(s) 2117
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 3 cut(s) 738, 1044, 1437
ZrmI AGTACT 1 cut(s) 1400
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.