Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001542

Physical Location & Seq

Genomic Coordinates Reverse (-)

19189762 .. 19191342

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGAGTTTTCAACCCTTGCGCCTTTTTGGCGGCCAAATTCTGAAAGCGGAGTCCGCCACTTTGGCGCAAGTCATCCAAACCTACGCAAAAACCAAGCAGCTAAACAAAGGCAAAGAGCTCCACGCTCACCTCCTCCGCACTCATTACCCACTATGCATTTTCCTCACCAACCACCTCCTCAATATGTACTCCAAATGCGGGCACGTCGATTATGCCCTCAAGCTTTTCGACCAAATGCCTCACCGAAACTTGGTTTCCTGGACTGCAATGGTAACTGGGTTTTCTCAGAACATGAGGTTCTCGGAGAGTTTCAAGAATGCTGGGGAGAGCCCGACCCAGTTTGCATTTGCAAGTGTCATCAGAGCTTGTGTGGTTATTGGGTCGGTTGAGATTGGGAGGCAGCTGCATTCTCTTGCTTTGAAATTGGGCTTGGCTTGTGAGCTGTTTGTGGGCAGTAGCTTGGCGGATATGTATTCGAAATGTGGGTTCATGGTTGAGGCTTGTAAGGTTTTCGAGGAAATGCCGAGTAAGGATGCTGTATCGTGGACTTCGATGATTGATGGGTATGCAAAAAGTGGGGATTTTGAGGCAGCTTTACTGAGTTATCAGAGGATGATCAATGATGGGATTGGTGTAGATAAATATGTTGTTTCCAGTGCATTGAGATTGGAAGTAGAGGTTGCTGTGGGAAATGCTCTGGTTGATATGTACTCGAAATCAGGTGATATGGAGAGTGCTTTAAATGTGTTTCGGGTTGACCCTGAGAGTAGAAATATTGTGTCGTATTCCTCTCTGATCAATGGTTATGTCGAGATGGATGAAATCGAGAAGGCTTTTGTGTGTTTGTTGACCTGCAGAGGGGGGGGAGTTGAGCCCAATCAGTTCACTTTCTCTAGCTTGGTCAAGGCCTGTGCCAACCAAGCTGCACTTGAACAAGGGATTCAACTTCAGGCTCAGGTGATCAAGTTTAATTTTGATAGAGACAATTTTGTGTCTTCTGTTCTTGTTGATATGTATGGAAAATGTGGGTTACTTGATCACTCAATACAAGTGTTTGACGAGATAGTAAACCCGACTGAAGTTGCATGGAATTCGTTGCTAAGTGTATTTGCAGTTCATGGCTTAGGAAATGACGCCTTGAAAACTTTTAGTAGAATGGTCGGGGCAGGAGTGAAACCAAATGCAATAACATTTATCAGCCTTTTAACAGGTTGTAGCCATTCTGGATCGGTAGAGGAAGGTTTAACGTACTTTTACTTTATGGAGAAAACATATGGCATAGTACCTAGAGCTGGACATTACTCTTGCGTTATTGATTTACTTGGCCGGGCTGGAAGGCTTGAAGAGGCCGAAGAATTCATTAACAGCATGCCAGTGCAGCCAAATGCTTTTGGATGGTGCTCTTTTCTTGGCGCTTGCACAATTCGTGGTGATAAAGAAAGGGGCAAACTGGCAGCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

487

Amino Acids

53.56

Weight (kDa)

5.83

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	53 - 94	1e-05	PPR repeat family
PPR_2	PF13041	177 - 216	8.8e-06	PPR repeat family
PPR	PF01535	180 - 210	3.5e-07	PPR repeat
PPR_2	PF13041	257 - 306	2.2e-09	PPR repeat family
PPR_2	PF13041	358 - 406	1.9e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18620
malus_domestica	MD12G1035700.v1.1
prunus_persica	Prupe.7G110800_v2.0.a1
pyrus_communis	pycom12g02350
rosa_chinensis	RchiOBHm_Chr3g0473201 RchiOBHm_Chr3g0473271 RchiOBHm_Chr3g0473331 RchiOBHm_Chr3g0473361 RchiOBHm_Chr3g0473371 RchiOBHm_Chr3g0473431 RchiOBHm_Chr3g0473471 RchiOBHm_Chr3g0473501 RchiOBHm_Chr3g0473511 RchiOBHm_Chr3g0473551 RchiOBHm_Chr7g0233141
rosa_laevigata	RLG00000001293 RLG00000024007 RLG00000024017
rosa_multiflora	Rmu_sc0000908.1_g000014 Rmu_sc0000908.1_g000027 Rmu_sc0003069.1_g000052 Rmu_sc0003069.1_g000057 Rmu_sc0004463.1_g000001 Rmu_sc0010262.1_g000001 Rmu_sc0016164.1_g000017
rosa_roxburghii	Rroxscaffold_6G00408080 Rroxscaffold_6G00408190 Rroxscaffold_6G00408210
rosa_rugosa	Rorug03G0132200 Rorug03G0132500 Rorug07G0278700
rosa_samantha	Rh3BG210400 Rh3BG210700 Rh3BG211000 Rh3BG211100 Rh3BG211300 Rh3BG211900 Rh3BG212100 Rh3BG212300 Rh3CG207600 Rh3CG207800 Rh3CG208300 Rh3CG208400 Rh3CG208600 Rh3CG208800 Rh3DG207500 Rh3DG207900 Rh7BG406800 Rh7BG406900
rosa_wichuraiana	Rw0G008140 Rw0G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	860
AciI	CCGC	6 cut(s)	30, 47, 54, 136, 198, 464
AclWI	GGATC	1 cut(s)	1234
AcoI	YGGCCR	2 cut(s)	31, 1324
AcsI	RAATTY	3 cut(s)	36, 1090, 1355
AcuI	CTGAAG	2 cut(s)	932, 1098
AcyI	GRCGYC	1 cut(s)	1134
AfaI	GTAC	4 cut(s)	188, 710, 1250, 1284
AfiI	CCNNNNNNNGG	4 cut(s)	198, 250, 858, 1292
AgsI	TTSAA	7 cut(s)	11, 313, 421, 932, 944, 1141, 1343
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
Alw21I	GWGCWC	2 cut(s)	120, 1403
Alw26I	GTCTC	1 cut(s)	975
AlwI	GGATC	1 cut(s)	1234
AoxI	GGCC	4 cut(s)	31, 906, 1324, 1347
ApeKI	GCWGC	7 cut(s)	97, 400, 403, 590, 923, 1378, 1454
ApoI	RAATTY	3 cut(s)	36, 1090, 1355
AspLEI	GCGC	3 cut(s)	21, 67, 1415
AsuC2I	CCSGG	1 cut(s)	1328
AsuHPI	GGTGA	6 cut(s)	119, 157, 233, 734, 970, 1442
AsuII	TTCGAA	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	3 cut(s)	120, 332, 876
BbsI	GAAGAC	1 cut(s)	987
Bbv12I	GWGCWC	2 cut(s)	120, 1403
BbvI	GCAGC	6 cut(s)	109, 390, 412, 602, 910, 1390
BccI	CCATC	4 cut(s)	554, 617, 808, 1389
BcgI	CGANNNNNNTGC	2 cut(s)	1074, 1108
BciT130I	CCWGG	1 cut(s)	259
BclI	TGATCA	4 cut(s)	615, 795, 960, 1036
BcnI	CCSGG	1 cut(s)	1328
BcoDI	GTCTC	1 cut(s)	975
BfaI	CTAG	2 cut(s)	894, 1287
BfmI	CTRYAG	1 cut(s)	853
BfoI	RGCGCY	1 cut(s)	1416
BfuAI	ACCTGC	1 cut(s)	860
BglI	GCCNNNNNGGC	2 cut(s)	27, 62
BisI	GCNGC	8 cut(s)	31, 98, 401, 404, 591, 924, 1379, 1455
BlsI	GCNGC	8 cut(s)	32, 99, 402, 405, 592, 925, 1380, 1456
Bme1390I	CCNGG	2 cut(s)	259, 1328
BmgBI	CACGTC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	259, 1328
BmrI	ACTGGG	2 cut(s)	285, 331
BmsI	GCATC	1 cut(s)	523
BmuI	ACTGGG	2 cut(s)	285, 331
BpiI	GAAGAC	1 cut(s)	987
Bpu10I	CCTNAGC	2 cut(s)	954, 1123
Bpu14I	TTCGAA	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	1328
BsaHI	GRCGYC	1 cut(s)	1134
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 250, 858, 1292
Bse1I	ACTGG	5 cut(s)	280, 337, 654, 1373, 1455
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	259
BseGI	GGATG	5 cut(s)	72, 538, 618, 823, 1400
BseLI	CCNNNNNNNGG	4 cut(s)	198, 250, 858, 1292
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	4 cut(s)	299, 590, 753, 968
BseNI	ACTGG	5 cut(s)	280, 337, 654, 1373, 1455
BseRI	GAGGAG	2 cut(s)	122, 167
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	6 cut(s)	109, 390, 412, 602, 910, 1390
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	2 cut(s)	909, 1397
BshFI	GGCC	4 cut(s)	33, 908, 1326, 1349
BsiHKAI	GWGCWC	2 cut(s)	120, 1403
BsiSI	CCGG	1 cut(s)	1327
BslI	CCNNNNNNNGG	4 cut(s)	198, 250, 858, 1292
BsmAI	GTCTC	1 cut(s)	975
BsmI	GAATGC	2 cut(s)	322, 406
BsnI	GGCC	4 cut(s)	33, 908, 1326, 1349
Bsp119I	TTCGAA	1 cut(s)	476
Bsp1286I	GDGCHC	5 cut(s)	120, 204, 332, 876, 1403
Bsp143I	GATC	5 cut(s)	615, 795, 960, 1036, 1226
BspACI	CCGC	6 cut(s)	30, 47, 54, 136, 198, 464
BspANI	GGCC	4 cut(s)	33, 908, 1326, 1349
BspCNI	CTCAG	4 cut(s)	298, 591, 754, 967
BspMAI	CTGCAG	1 cut(s)	857
BspMI	ACCTGC	1 cut(s)	860
BspPI	GGATC	1 cut(s)	1234
BspT104I	TTCGAA	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	5 cut(s)	280, 337, 654, 1373, 1455
BssMI	GATC	5 cut(s)	615, 795, 960, 1036, 1226
BssNI	GRCGYC	1 cut(s)	1134
Bst2UI	CCWGG	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	1338
BstACI	GRCGYC	1 cut(s)	1134
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	200, 1370, 1417
BstDEI	CTNAG	6 cut(s)	285, 599, 762, 954, 1100, 1123
BstF5I	GGATG	5 cut(s)	72, 538, 618, 823, 1400
BstH2I	RGCGCY	1 cut(s)	1416
BstHHI	GCGC	3 cut(s)	21, 67, 1415
BstKTI	GATC	5 cut(s)	618, 798, 963, 1039, 1229
BstMAI	GTCTC	1 cut(s)	975
BstMBI	GATC	5 cut(s)	615, 795, 960, 1036, 1226
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 53, 62, 920, 1378
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	1372
BstSCI	CCNGG	2 cut(s)	257, 1326
BstSFI	CTRYAG	1 cut(s)	853
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	6 cut(s)	109, 390, 412, 602, 910, 1390
BstV2I	GAAGAC	1 cut(s)	987
BsuRI	GGCC	4 cut(s)	33, 908, 1326, 1349
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	5 cut(s)	72, 538, 618, 823, 1400
BtsIMutI	CAGTG	2 cut(s)	661, 1380
BveI	ACCTGC	1 cut(s)	860
Cac8I	GCNNGC	3 cut(s)	200, 1370, 1417
CfoI	GCGC	3 cut(s)	21, 67, 1415
CseI	GACGC	1 cut(s)	1142
Csp6I	GTAC	4 cut(s)	187, 709, 1249, 1283
CviAII	CATG	5 cut(s)	292, 490, 1086, 1118, 1369
CviQI	GTAC	4 cut(s)	187, 709, 1249, 1283
DdeI	CTNAG	6 cut(s)	285, 599, 762, 954, 1100, 1123
DpnI	GATC	5 cut(s)	617, 797, 962, 1038, 1228
DpnII	GATC	5 cut(s)	615, 795, 960, 1036, 1226
DraI	TTTAAA	1 cut(s)	741
EaeI	YGGCCR	2 cut(s)	31, 1324
Eam1104I	CTCTTC	1 cut(s)	1338
EarI	CTCTTC	1 cut(s)	1338
EciI	GGCGGA	2 cut(s)	43, 479
Ecl136II	GAGCTC	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	908
Eco24I	GRGCYC	3 cut(s)	120, 332, 876
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	2 cut(s)	932, 1098
EcoICRI	GAGCTC	1 cut(s)	118
EcoRI	GAATTC	2 cut(s)	1090, 1355
EcoRII	CCWGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	158
EcoT38I	GRGCYC	3 cut(s)	120, 332, 876
FaeI	CATG	5 cut(s)	295, 493, 1089, 1121, 1372
FalI	AAGNNNNNCTT	2 cut(s)	912, 944
FatI	CATG	5 cut(s)	291, 489, 1085, 1117, 1368
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	1273
FbaI	TGATCA	4 cut(s)	615, 795, 960, 1036
Fnu4HI	GCNGC	8 cut(s)	31, 98, 401, 404, 591, 924, 1379, 1455
FokI	GGATG	5 cut(s)	59, 545, 625, 830, 1407
FriOI	GRGCYC	3 cut(s)	120, 332, 876
Fsp4HI	GCNGC	8 cut(s)	31, 98, 401, 404, 591, 924, 1379, 1455
FspBI	CTAG	2 cut(s)	894, 1287
GlaI	GCGC	3 cut(s)	20, 66, 1414
GluI	GCNGC	8 cut(s)	31, 98, 401, 404, 591, 924, 1379, 1455
GsaI	CCCAGC	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	1416
HaeIII	GGCC	4 cut(s)	33, 908, 1326, 1349
HapII	CCGG	1 cut(s)	1327
HgaI	GACGC	1 cut(s)	1142
HhaI	GCGC	3 cut(s)	21, 67, 1415
Hin1I	GRCGYC	1 cut(s)	1134
Hin1II	CATG	5 cut(s)	295, 493, 1089, 1121, 1372
Hin6I	GCGC	3 cut(s)	19, 65, 1413
HinP1I	GCGC	3 cut(s)	19, 65, 1413
HincII	GTYRAC	2 cut(s)	757, 849
HindII	GTYRAC	2 cut(s)	757, 849
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	2 cut(s)	50, 940
HpaII	CCGG	1 cut(s)	1327
HphI	GGTGA	6 cut(s)	119, 157, 233, 734, 970, 1442
Hpy166II	GTNNAC	5 cut(s)	546, 757, 849, 885, 1069
Hpy188I	TCNGA	6 cut(s)	42, 288, 304, 362, 609, 795
Hpy188III	TCNNGA	4 cut(s)	313, 811, 826, 1224
Hpy8I	GTNNAC	5 cut(s)	546, 757, 849, 885, 1069
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	823, 1232, 1329
HpyCH4IV	ACGT	2 cut(s)	204, 1247
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 53, 62, 920, 1378
HpyF3I	CTNAG	6 cut(s)	285, 599, 762, 954, 1100, 1123
HpySE526I	ACGT	2 cut(s)	204, 1247
Hsp92I	GRCGYC	1 cut(s)	1134
Hsp92II	CATG	5 cut(s)	295, 493, 1089, 1121, 1372
HspAI	GCGC	3 cut(s)	19, 65, 1413
Ksp22I	TGATCA	4 cut(s)	615, 795, 960, 1036
Kzo9I	GATC	5 cut(s)	615, 795, 960, 1036, 1226
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	6 cut(s)	109, 390, 412, 602, 910, 1390
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	2 cut(s)	894, 1287
MaeII	ACGT	2 cut(s)	204, 1247
MaeIII	GTNAC	2 cut(s)	271, 1029
MalI	GATC	5 cut(s)	617, 797, 962, 1038, 1228
MboI	GATC	5 cut(s)	615, 795, 960, 1036, 1226
MboII	GAAGA	3 cut(s)	987, 1355, 1364
MhlI	GDGCHC	5 cut(s)	120, 204, 332, 876, 1403
MluCI	AATT	7 cut(s)	36, 422, 970, 985, 1090, 1355, 1422
MlyI	GAGTC	1 cut(s)	59
Mph1103I	ATGCAT	1 cut(s)	158
MseI	TTAA	5 cut(s)	740, 969, 1205, 1244, 1362
MslI	CAYNNNNRTG	1 cut(s)	1373
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	1 cut(s)	1327
MspR9I	CCNGG	2 cut(s)	259, 1328
Mva1269I	GAATGC	2 cut(s)	322, 406
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	5 cut(s)	27, 53, 62, 920, 1378
NciI	CCSGG	1 cut(s)	1328
NdeI	CATATG	1 cut(s)	1273
NdeII	GATC	5 cut(s)	615, 795, 960, 1036, 1226
NlaIII	CATG	5 cut(s)	295, 493, 1089, 1121, 1372
NmeAIII	GCCGAG	1 cut(s)	549
NsiI	ATGCAT	1 cut(s)	158
NspI	RCATGY	1 cut(s)	1372
NspV	TTCGAA	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	1372
PceI	AGGCCT	1 cut(s)	908
PcsI	WCGNNNNNNNCGW	1 cut(s)	548
PctI	GAATGC	2 cut(s)	322, 406
PfeI	GAWTC	1 cut(s)	940
PfoI	TCCNGGA	1 cut(s)	257
PkrI	GCNGC	8 cut(s)	32, 99, 402, 405, 592, 925, 1380, 1456
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	257
PsrI	GAACNNNNNNTAC	2 cut(s)	1098, 1130
PstI	CTGCAG	1 cut(s)	857
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	4 cut(s)	188, 710, 1250, 1284
RsaNI	GTAC	4 cut(s)	187, 709, 1249, 1283
RseI	CAYNNNNRTG	1 cut(s)	1373
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	5 cut(s)	740, 969, 1205, 1244, 1362
SatI	GCNGC	8 cut(s)	31, 98, 401, 404, 591, 924, 1379, 1455
Sau3AI	GATC	5 cut(s)	615, 795, 960, 1036, 1226
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	259, 1328
SduI	GDGCHC	5 cut(s)	120, 204, 332, 876, 1403
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	1 cut(s)	853
SfuI	TTCGAA	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	1373
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SphI	GCATGC	1 cut(s)	1372
Sse9I	AATT	7 cut(s)	36, 422, 970, 985, 1090, 1355, 1422
SseBI	AGGCCT	1 cut(s)	908
SsiI	CCGC	6 cut(s)	30, 47, 54, 136, 198, 464
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	2 cut(s)	894, 1287
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	908
StyD4I	CCNGG	2 cut(s)	257, 1326
TaiI	ACGT	2 cut(s)	207, 1250
TaqI	TCGA	8 cut(s)	207, 228, 476, 513, 551, 713, 810, 825
TasI	AATT	7 cut(s)	36, 422, 970, 985, 1090, 1355, 1422
TatI	WGTACW	2 cut(s)	186, 708
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	940
Tru1I	TTAA	5 cut(s)	740, 969, 1205, 1244, 1362
Tru9I	TTAA	5 cut(s)	740, 969, 1205, 1244, 1362
TscAI	CASTG	2 cut(s)	661, 1380
TseI	GCWGC	7 cut(s)	97, 400, 403, 590, 923, 1378, 1454
TspDTI	ATGAA	4 cut(s)	478, 834, 1106, 1348
TspRI	CASTG	2 cut(s)	661, 1380
XapI	RAATTY	3 cut(s)	36, 1090, 1355
XceI	RCATGY	1 cut(s)	1372
XspI	CTAG	2 cut(s)	894, 1287
Zsp2I	ATGCAT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.