Rroxscaffold_6G00408210

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001542
Physical Location & Seq
Forward (+)
30712317 .. 30714435
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408210.1

Sequence Viewer

Length: 2085 bp
ATGCATTTGCACCGCTTTCTTTATGAGTTTTCAACCCTTGCGCCTTTTTGGCGGCCAAAAATTCTGAAAGATGAGTCCACCAGCTTGGCGCAAGTCATCCAAACTTACGCAAAAACCAAGCAGCTAAACAAAGGCAAAGAGCTCCACGCTCACCTCCTACGCACTCATTACCCACTATGCATTTTCCTCACCAACCACCTCCTCAACATGTACTCCAAATGTGGGCACGTCGATTACGCCCTCAAGGTTTTCGACCAAATGCCTCACCGAAACTTGGTTTCCTGGACTGCAATGGTAACTGGGTTTTCTCAGAACTTGAGGTTCTCCGAGAGTTTCAAGGCCTTTTCCCAGATGAGAAGTGCTTGGGAGAGCCCGACCCAGTTTGCATTTGCAAGTGTCATCAGAGCTTGTGTGGTTCTTGGGTCGGTTGAGATAGGGAGGCAGCTGCATTCTCTTGCTTTGAAATTGGGCTTGGCTTGTGAGCTGTTTGTGGGTAGTAACTTGGCGGATATGTATTCGAAATGTGGGTTTATGGTTGAGGCTTGTAAGGTTTTCGAGGAAATGCCGAGTAAGGATGCTGTGTCGTGGACTTCGATGATTGATGGGTATGCAAAGAGTGGGGATTTTGAGGCAGCTTTACTGACTTATAAGAGGATGGTTAGTGATGGGATTGGTATAGATAAACATGTTGTTTCTAGTGCATTGAGTGCTTGTTCTGCATTGAAGGCTTGTCAGTTTGGAAAGTGTGTCCATTCGACGGTTGTGAAGTTGGGATTGGAAGTAGAGGTTGCTGTGGGAAATGCTCTGGTTGATATGTACTCGAAATCAGGTGATATGGAGAGTGCTTTAAATGTGTTTCGGGTTGACCCTGAGTGCAGAAATATTGTGTCGTATTCCTCTCTGATCAATGGTTATGTTGAGATGGATGAAATCGAGAAGGCTTTTAGTGTGTTTGTTGACTTACAGAGAAGGGGAGCTGAGCCTAATCAGCTTGTGCCAACCAAAGCTGCACTTGAACAAGGGATCCAACTTCATGCTCAGGTGGTCAAGTTTAATTTTGATAGAGATGATTTTGTGTCTTCTGTTCTTGTTGATATGTATGGGAAATGTGGGTTACTTGATCATTCAATACAAGTTTTTGACAAGGTAGCCACCCCAACTGAAGTTGCATGGAATTCATTGCTATGTGTATTTGCAGTTCACGGCTTAGGAAATGACGCCTTGAAAATTTTTAGTAGAATGGTCCAGGCAGGAGTGAAACCAAATGCAATAACATTTATCAGTCTTTTAACAGGCTGTAGCCATTCTGGATTGGTAGAGGAAGGTTTAAAGTACTTTTACTCTCTGGAGAAAACATATGGCATTGTACCTAGAGCTGGACATTACTCTTGCGTTATTGATTTACTTGGCAGGGCTGGAAGGCTTGAAGAGGCCGAAGAATTCATTAACAGCATGCCAATGCAGCCAAATGCTTTTGGATGGTGCTCTTTTCTTGGTGCTTGCACAATTCATGGTGATAAAGAGAGGGGCAAACTGGCAGCGGAGAAATTGATACAGCTTGAACCTGAGAATAGTGGAGCACATGTGTTGCTTTCAACTATATATGCAAAGGAGCAGAAATGGGAAGATTTCAGGGGTGTGAGGAGGATAATGAGGGACAGCAGCATGAAGAAATTGCCTGGTTATAGTTGGATTGACATTGGAAACAAAACACACACATTTGGAGCCGAAGATTGGTCTCATCCTCAGAAGAAAGAAATATATGAGAAGCTTGATAGTCTTCTTGATCAGATAAAGAAGGCTGGATATGTTCCAAATACAGATCTTGTTCTTCATGATATGGACGACAATTCAAAGGTAGAGCTTCTTCACCATCATAGTGAGAGGATAGCGATTGCATTTGCACTGATAAGTATGCCTGCTGGGAAGCCAATCATTGTGAAGAAAAATATAAGGGTGTGCTTGGATTGTCATTCTGCAATCAAGTACATCTCCTTGGTTGTTGGAAGAAAGATTATTGTTAGGGATAATACTCGGTTTCACCATTTCGCAGATGGGTTGTGTTCATGTGGAGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

694

Amino Acids

77.66

Weight (kDa)

7.32

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 192 - 238 4.6e-07 PPR repeat family
PPR PF01535 194 - 224 2.6e-08 PPR repeat
PPR_2 PF13041 293 - 330 1e-07 PPR repeat family
PPR_2 PF13041 386 - 434 4.5e-11 PPR repeat family
E_motif PF20431 504 - 566 1.2e-17 E motif
Eplus_motif PF20430 571 - 598 1.5e-09 E+ motif
DYW_deaminase PF14432 602 - 694 1.4e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AciI CCGC 4 cut(s) 13, 52, 506, 1541
AclWI GGATC 2 cut(s) 1018, 1031
AcoI YGGCCR 1 cut(s) 53
AcsI RAATTY 4 cut(s) 60, 1174, 1227, 1439
AcuI CTGAAG 1 cut(s) 1182
AcyI GRCGYC 1 cut(s) 1218
AfaI GTAC 5 cut(s) 212, 818, 1334, 1368, 1988
AfiI CCNNNNNNNGG 5 cut(s) 222, 274, 757, 1376, 1734
AflIII ACRYGT 3 cut(s) 207, 685, 1582
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 3 cut(s) 281, 1245, 1678
AjuI GAANNNNNNNTTGG 4 cut(s) 455, 487, 758, 790
AloI GAACNNNNNNTCC 2 cut(s) 1008, 1040
Alw21I GWGCWC 3 cut(s) 144, 1487, 1582
Alw26I GTCTC 1 cut(s) 1743
AlwI GGATC 2 cut(s) 1018, 1031
AoxI GGCC 3 cut(s) 53, 339, 1431
ApeKI GCWGC 8 cut(s) 121, 442, 445, 632, 1007, 1462, 1538, 1662
ApoI RAATTY 4 cut(s) 60, 1174, 1227, 1439
AspLEI GCGC 2 cut(s) 43, 91
AspS9I GGNCC 1 cut(s) 1243
AsuHPI GGTGA 7 cut(s) 143, 181, 257, 842, 1526, 1862, 2033
AsuII TTCGAA 1 cut(s) 518
AvaII GGWCC 1 cut(s) 1243
BaeGI GKGCMC 1 cut(s) 228
BamHI GGATCC 1 cut(s) 1023
BanII GRGCYC 2 cut(s) 144, 374
BarI GAAGNNNNNNTAC 2 cut(s) 1851, 1883
BbsI GAAGAC 2 cut(s) 1071, 1772
Bbv12I GWGCWC 3 cut(s) 144, 1487, 1582
BbvI GCAGC 8 cut(s) 133, 432, 454, 644, 994, 1474, 1550, 1674
BccI CCATC 7 cut(s) 596, 649, 659, 916, 1473, 1881, 2048
BceAI ACGGC 1 cut(s) 1219
BciT130I CCWGG 3 cut(s) 283, 1247, 1680
BclI TGATCA 3 cut(s) 903, 1120, 1786
BcoDI GTCTC 1 cut(s) 1743
BfaI CTAG 2 cut(s) 696, 1371
BfmI CTRYAG 1 cut(s) 1297
BglI GCCNNNNNGGC 1 cut(s) 49
BglII AGATCT 1 cut(s) 1822
BisI GCNGC 9 cut(s) 53, 122, 443, 446, 633, 1008, 1463, 1539, 1663
BlpI GCTNAGC 1 cut(s) 978
BlsI GCNGC 9 cut(s) 54, 123, 444, 447, 634, 1009, 1464, 1540, 1664
BmcAI AGTACT 1 cut(s) 1334
Bme1390I CCNGG 3 cut(s) 283, 1247, 1680
Bme18I GGWCC 1 cut(s) 1243
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 1243
BmiI GGNNCC 2 cut(s) 1025, 1726
BmrFI CCNGG 3 cut(s) 283, 1247, 1680
BmrI ACTGGG 2 cut(s) 309, 373
BmsI GCATC 1 cut(s) 565
BmuI ACTGGG 2 cut(s) 309, 373
BpiI GAAGAC 2 cut(s) 1071, 1772
BpmI CTGGAG 1 cut(s) 1367
Bpu10I CCTNAGC 2 cut(s) 1038, 1207
Bpu1102I GCTNAGC 1 cut(s) 978
Bpu14I TTCGAA 1 cut(s) 518
BpuEI CTTGAG 2 cut(s) 227, 337
BsaHI GRCGYC 1 cut(s) 1218
BsaI GGTCTC 1 cut(s) 1743
BsaJI CCNNGG 1 cut(s) 1995
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 1569, 1599
Bsc4I CCNNNNNNNGG 5 cut(s) 222, 274, 757, 1376, 1734
Bse1I ACTGG 4 cut(s) 304, 379, 1539, 2084
Bse3DI GCAATG 2 cut(s) 297, 1178
BseBI CCWGG 3 cut(s) 283, 1247, 1680
BseDI CCNNGG 1 cut(s) 1995
BseGI GGATG 6 cut(s) 96, 580, 660, 931, 1484, 1741
BseLI CCNNNNNNNGG 5 cut(s) 222, 274, 757, 1376, 1734
BseMI GCAATG 2 cut(s) 297, 1178
BseMII CTCAG 6 cut(s) 323, 861, 969, 1052, 1557, 1760
BseNI ACTGG 4 cut(s) 304, 379, 1539, 2084
BseRI GAGGAG 2 cut(s) 191, 1657
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 8 cut(s) 133, 432, 454, 644, 994, 1474, 1550, 1674
BseYI CCCAGC 1 cut(s) 1922
BsgI GTGCAG 2 cut(s) 895, 993
BshFI GGCC 3 cut(s) 55, 341, 1433
BsiHKAI GWGCWC 3 cut(s) 144, 1487, 1582
BslFI GGGAC 1 cut(s) 1670
BslI CCNNNNNNNGG 5 cut(s) 222, 274, 757, 1376, 1734
BsmAI GTCTC 1 cut(s) 1743
BsmFI GGGAC 1 cut(s) 1670
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 3 cut(s) 55, 341, 1433
Bso31I GGTCTC 1 cut(s) 1743
Bsp119I TTCGAA 1 cut(s) 518
Bsp1286I GDGCHC 5 cut(s) 144, 228, 374, 1487, 1582
Bsp143I GATC 5 cut(s) 903, 1023, 1120, 1786, 1822
Bsp1720I GCTNAGC 1 cut(s) 978
BspACI CCGC 4 cut(s) 13, 52, 506, 1541
BspANI GGCC 3 cut(s) 55, 341, 1433
BspCNI CTCAG 6 cut(s) 322, 862, 970, 1051, 1558, 1759
BspHI TCATGA 1 cut(s) 1834
BspLI GGNNCC 2 cut(s) 1025, 1726
BspPI GGATC 2 cut(s) 1018, 1031
BspT104I TTCGAA 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 1743
BsrDI GCAATG 2 cut(s) 297, 1178
BsrI ACTGG 4 cut(s) 304, 379, 1539, 2084
BssECI CCNNGG 1 cut(s) 1995
BssMI GATC 5 cut(s) 903, 1023, 1120, 1786, 1822
BssNI GRCGYC 1 cut(s) 1218
BssT1I CCWWGG 1 cut(s) 1995
Bst2UI CCWGG 3 cut(s) 283, 1247, 1680
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 1 cut(s) 1422
BstACI GRCGYC 1 cut(s) 1218
BstAPI GCANNNNNTGC 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 1454, 1501, 1920
BstDEI CTNAG 7 cut(s) 309, 870, 978, 1038, 1207, 1566, 1746
BstF5I GGATG 6 cut(s) 96, 580, 660, 931, 1484, 1741
BstHHI GCGC 2 cut(s) 43, 91
BstKTI GATC 5 cut(s) 906, 1026, 1123, 1789, 1825
BstMAI GTCTC 1 cut(s) 1743
BstMBI GATC 5 cut(s) 903, 1023, 1120, 1786, 1822
BstMWI GCNNNNNNNGC 6 cut(s) 49, 707, 716, 725, 988, 1462
BstNI CCWGG 3 cut(s) 283, 1247, 1680
BstNSI RCATGY 4 cut(s) 211, 689, 1456, 1586
BstSCI CCNGG 3 cut(s) 281, 1245, 1678
BstSFI CTRYAG 1 cut(s) 1297
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 8 cut(s) 133, 432, 454, 644, 994, 1474, 1550, 1674
BstV2I GAAGAC 2 cut(s) 1071, 1772
BstX2I RGATCY 2 cut(s) 1023, 1822
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 2 cut(s) 1023, 1822
BsuRI GGCC 3 cut(s) 55, 341, 1433
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 6 cut(s) 96, 580, 660, 931, 1484, 1741
BtsIMutI CAGTG 1 cut(s) 1904
Cac8I GCNNGC 3 cut(s) 1454, 1501, 1920
CciI TCATGA 1 cut(s) 1834
CfoI GCGC 2 cut(s) 43, 91
Cfr13I GGNCC 1 cut(s) 1243
CseI GACGC 1 cut(s) 1226
Csp6I GTAC 5 cut(s) 211, 817, 1333, 1367, 1987
CviQI GTAC 5 cut(s) 211, 817, 1333, 1367, 1987
DdeI CTNAG 7 cut(s) 309, 870, 978, 1038, 1207, 1566, 1746
DpnI GATC 5 cut(s) 905, 1025, 1122, 1788, 1824
DpnII GATC 5 cut(s) 903, 1023, 1120, 1786, 1822
DraI TTTAAA 2 cut(s) 849, 1329
EaeI YGGCCR 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 1422
EarI CTCTTC 1 cut(s) 1422
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 1995
Eco147I AGGCCT 1 cut(s) 341
Eco24I GRGCYC 2 cut(s) 144, 374
Eco31I GGTCTC 1 cut(s) 1743
Eco47I GGWCC 1 cut(s) 1243
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 1182
EcoICRI GAGCTC 1 cut(s) 142
EcoRI GAATTC 2 cut(s) 1174, 1439
EcoRII CCWGG 3 cut(s) 281, 1245, 1678
EcoT14I CCWWGG 1 cut(s) 1995
EcoT22I ATGCAT 2 cut(s) 6, 182
EcoT38I GRGCYC 2 cut(s) 144, 374
ErhI CCWWGG 1 cut(s) 1995
FalI AAGNNNNNCTT 2 cut(s) 996, 1028
FaqI GGGAC 1 cut(s) 1670
FauNDI CATATG 1 cut(s) 1357
FbaI TGATCA 3 cut(s) 903, 1120, 1786
Fnu4HI GCNGC 9 cut(s) 53, 122, 443, 446, 633, 1008, 1463, 1539, 1663
FokI GGATG 6 cut(s) 83, 587, 667, 938, 1491, 1728
FriOI GRGCYC 2 cut(s) 144, 374
Fsp4HI GCNGC 9 cut(s) 53, 122, 443, 446, 633, 1008, 1463, 1539, 1663
FspBI CTAG 2 cut(s) 696, 1371
GlaI GCGC 2 cut(s) 42, 90
GluI GCNGC 9 cut(s) 53, 122, 443, 446, 633, 1008, 1463, 1539, 1663
GsaI CCCAGC 1 cut(s) 1926
GsuI CTGGAG 1 cut(s) 1367
HaeIII GGCC 3 cut(s) 55, 341, 1433
HgaI GACGC 1 cut(s) 1226
HhaI GCGC 2 cut(s) 43, 91
Hin1I GRCGYC 1 cut(s) 1218
Hin6I GCGC 2 cut(s) 41, 89
HinP1I GCGC 2 cut(s) 41, 89
HincII GTYRAC 2 cut(s) 865, 958
HindII GTYRAC 2 cut(s) 865, 958
HindIII AAGCTT 1 cut(s) 1769
HinfI GANTC 1 cut(s) 74
HphI GGTGA 7 cut(s) 143, 181, 257, 842, 1526, 1862, 2033
Hpy166II GTNNAC 5 cut(s) 78, 588, 865, 958, 1201
Hpy188I TCNGA 7 cut(s) 66, 312, 328, 404, 903, 1749, 1791
Hpy188III TCNNGA 5 cut(s) 934, 1308, 1346, 1784, 1835
Hpy8I GTNNAC 5 cut(s) 78, 588, 865, 958, 1201
Hpy99I CGWCG 2 cut(s) 233, 760
HpyAV CCTTC 6 cut(s) 718, 931, 963, 1316, 1413, 1792
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4IV ACGT 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 707, 716, 725, 988, 1462
HpyF3I CTNAG 7 cut(s) 309, 870, 978, 1038, 1207, 1566, 1746
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 1218
HspAI GCGC 2 cut(s) 41, 89
Ksp22I TGATCA 3 cut(s) 903, 1120, 1786
Kzo9I GATC 5 cut(s) 903, 1023, 1120, 1786, 1822
LmnI GCTCC 5 cut(s) 147, 974, 1577, 1612, 1724
Lsp1109I GCAGC 8 cut(s) 133, 432, 454, 644, 994, 1474, 1550, 1674
LweI GCATC 1 cut(s) 565
MaeI CTAG 2 cut(s) 696, 1371
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 295, 497, 1113
MalI GATC 5 cut(s) 905, 1025, 1122, 1788, 1824
MboI GATC 5 cut(s) 903, 1023, 1120, 1786, 1822
MflI RGATCY 2 cut(s) 1023, 1822
MhlI GDGCHC 5 cut(s) 144, 228, 374, 1487, 1582
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 3 cut(s) 1051, 1670, 1984
Mph1103I ATGCAT 2 cut(s) 6, 182
MseI TTAA 5 cut(s) 848, 1053, 1289, 1328, 1446
MslI CAYNNNNRTG 3 cut(s) 1183, 1457, 1878
MspA1I CMGCKG 2 cut(s) 445, 1541
MspR9I CCNGG 3 cut(s) 283, 1247, 1680
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 3 cut(s) 283, 1247, 1680
MwoI GCNNNNNNNGC 6 cut(s) 49, 707, 716, 725, 988, 1462
NdeI CATATG 1 cut(s) 1357
NdeII GATC 5 cut(s) 903, 1023, 1120, 1786, 1822
NlaIV GGNNCC 2 cut(s) 1025, 1726
NmeAIII GCCGAG 1 cut(s) 591
NsiI ATGCAT 2 cut(s) 6, 182
NspI RCATGY 4 cut(s) 211, 689, 1456, 1586
NspV TTCGAA 1 cut(s) 518
PaeI GCATGC 1 cut(s) 1456
PagI TCATGA 1 cut(s) 1834
PceI AGGCCT 1 cut(s) 341
PciI ACATGT 3 cut(s) 207, 685, 1582
PcsI WCGNNNNNNNCGW 1 cut(s) 590
PctI GAATGC 1 cut(s) 448
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 9 cut(s) 54, 123, 444, 447, 634, 1009, 1464, 1540, 1664
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PscI ACATGT 3 cut(s) 207, 685, 1582
PsiI TTATAA 1 cut(s) 648
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 3 cut(s) 281, 1245, 1678
PspFI CCCAGC 1 cut(s) 1922
PspGI CCWGG 3 cut(s) 281, 1245, 1678
PspN4I GGNNCC 2 cut(s) 1025, 1726
PspPI GGNCC 1 cut(s) 1243
PsrI GAACNNNNNNTAC 2 cut(s) 1182, 1214
PsuI RGATCY 2 cut(s) 1023, 1822
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 5 cut(s) 212, 818, 1334, 1368, 1988
RsaNI GTAC 5 cut(s) 211, 817, 1333, 1367, 1987
RseI CAYNNNNRTG 3 cut(s) 1183, 1457, 1878
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 5 cut(s) 848, 1053, 1289, 1328, 1446
SatI GCNGC 9 cut(s) 53, 122, 443, 446, 633, 1008, 1463, 1539, 1663
Sau3AI GATC 5 cut(s) 903, 1023, 1120, 1786, 1822
Sau96I GGNCC 1 cut(s) 1243
ScaI AGTACT 1 cut(s) 1334
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 3 cut(s) 283, 1247, 1680
SduI GDGCHC 5 cut(s) 144, 228, 374, 1487, 1582
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 1 cut(s) 1297
SfuI TTCGAA 1 cut(s) 518
SinI GGWCC 1 cut(s) 1243
SmiMI CAYNNNNRTG 3 cut(s) 1183, 1457, 1878
SmlI CTYRAG 2 cut(s) 242, 316
SmoI CTYRAG 2 cut(s) 242, 316
SphI GCATGC 1 cut(s) 1456
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 4 cut(s) 13, 52, 506, 1541
SspI AATATT 1 cut(s) 883
SspMI CTAG 2 cut(s) 696, 1371
SstI GAGCTC 1 cut(s) 144
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 3 cut(s) 281, 1245, 1678
StyI CCWWGG 1 cut(s) 1995
TaaI ACNGT 1 cut(s) 760
TaiI ACGT 1 cut(s) 231
TaqI TCGA 8 cut(s) 231, 252, 518, 555, 593, 755, 821, 933
TatI WGTACW 4 cut(s) 210, 816, 1332, 1986
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 5 cut(s) 848, 1053, 1289, 1328, 1446
Tru9I TTAA 5 cut(s) 848, 1053, 1289, 1328, 1446
TscAI CASTG 1 cut(s) 1911
TseI GCWGC 8 cut(s) 121, 442, 445, 632, 1007, 1462, 1538, 1662
TspDTI ATGAA 8 cut(s) 942, 1022, 1167, 1432, 1499, 1682, 1823, 2055
TspRI CASTG 1 cut(s) 1911
VpaK11BI GGWCC 1 cut(s) 1243
XapI RAATTY 4 cut(s) 60, 1174, 1227, 1439
XceI RCATGY 4 cut(s) 211, 689, 1456, 1586
XcmI CCANNNNNNNNNTGG 1 cut(s) 2051
XspI CTAG 2 cut(s) 696, 1371
ZrmI AGTACT 1 cut(s) 1334
Zsp2I ATGCAT 2 cut(s) 6, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.