RLG00000024017

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001542
Physical Location & Seq
Forward (+)
30921284 .. 30922754
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024017

Sequence Viewer

Length: 1341 bp
ATGAGTATTCAACCCTTGGTACGTTCTGGCGGTCAAATTCTCAAGGAGTCCACCACCTTGGCTCAAGTTATCCAAACCTACGCAAAAACCAAGCAGCTAAACAAAGGCAAAGGGCTTCACGCTCACCTCCTTCGCACTCATTACCCACTATGCATTTTCCTCACCAACCACCTCCTCAACATGTACTCCAAATGCGGGGACGTCGATTACGCCCTCAAGGTTTTCGACCAAATGCCTCACCGAAACTTGGTTTCCTGGACTTCAATGGTCACTGGGTTTTCTCAGAACTTGAGGTTCTCCGAGAGTTTCAACGCCTTTTCCCAGATGAGAAGTGCTGGGGAGAGCCCGACTCAGTTTGCATGTGCAAGTGTCATCAGAGCTTGTGTGGTTCTTGGGTCGGTTGAGATTGGGAGGCAGCTGCATTCTCTTGCTTTGAAATTGGGTTTGTCTTGTGAGTTGTTTGTGGGTAGTAACTTGGCGGATATGTATTCAAAATGTGGGTTCATGGTTGAAGCTTGTAAGGTTTTCGAGGAAATGCCGAGTAAGGATGCTGTGTCGTGGACTTCGATGATTGATGGGTATGCAAAGAGTGGGGATTTTGAGGCAGCTTTACAGACTTATAAGAGAATGATCAATGATGGGATTGGTGTCGATAAATATGTTGTTTCTAGTGCATTGAGTGCTTGTTCTGCACTGAAGGCTTGTCAGTTTGGAAAGTGCGTTCATTTGACGGTTGTGAAGTTAGGATTGGAAGTAGAGGTTGCTGTGGGAAATGCTCTGCTTGATATGTACTCAAAATCAGGAGATATGGAGAGTGCTTTAAATGTGTTTTGGGTTGACCCTGAGCGTAGAAATATTGTGTCGTATTCCTCTCTGATCAATGGTTATGTCGAGATGGATGAAATCGAGAAGCCTTTTGACAATTTTGTGTCTTCTGTTCTTGTTGATATGTATGGAAAATGTGGGTTACTTGATCATTCAATACAAGTGTTTGACGAGGTAGCCACACCGACTGAAGTTGCATGGAATTCATTGCTTGTATTTGCAGTTCATGGCTTCGGAAATGACGCCTTGAAAACTTTTAGTAGAACGGTCCAAGCAAGAGTGAAACCAAATGTAATAACATTTAACAGTCTTTTAACAGGGTGTAGCCATTCTGGATTGGTAGAGGAAGGTTTGAAGTACTTTTACTCTCTGGAGAAAACATATGGAATAGTACCTAGAGCTGGACATTACTCTTGCATTATTGATCTACATGGCCGGGCTGGAAGGCTTGAAGAGGCCGAAGATTTTATTAACAGCATGCCAATGCAGCCAAATGCTTTTGGGTGGTGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

447

Amino Acids

49.27

Weight (kDa)

6.19

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 182 - 229 2.2e-08 PPR repeat family
PPR PF01535 185 - 215 5.9e-09 PPR repeat
PPR_2 PF13041 337 - 384 1e-05 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
AatII GACGTC 1 cut(s) 204
AciI CCGC 3 cut(s) 30, 195, 479
AcoI YGGCCR 1 cut(s) 1258
AcsI RAATTY 2 cut(s) 36, 1027
AcuI CTGAAG 2 cut(s) 716, 1035
AcyI GRCGYC 2 cut(s) 201, 1068
AfaI GTAC 5 cut(s) 21, 185, 791, 1184, 1218
AfiI CCNNNNNNNGG 3 cut(s) 195, 247, 1226
AflIII ACRYGT 1 cut(s) 180
AjnI CCWGG 1 cut(s) 254
AjuI GAANNNNNNNTTGG 2 cut(s) 731, 763
AloI GAACNNNNNNTCC 2 cut(s) 705, 737
AluBI AGCT 6 cut(s) 97, 380, 418, 515, 608, 1226
AluI AGCT 6 cut(s) 97, 380, 418, 515, 608, 1226
AoxI GGCC 2 cut(s) 1258, 1281
ApeKI GCWGC 5 cut(s) 94, 415, 418, 605, 1312
ApoI RAATTY 2 cut(s) 36, 1027
AspS9I GGNCC 1 cut(s) 1093
AsuC2I CCSGG 1 cut(s) 1262
AsuHPI GGTGA 3 cut(s) 116, 154, 230
AvaII GGWCC 1 cut(s) 1093
BanII GRGCYC 1 cut(s) 347
BarI GAAGNNNNNNTAC 2 cut(s) 1172, 1204
BbsI GAAGAC 1 cut(s) 924
BbvI GCAGC 5 cut(s) 106, 405, 427, 617, 1324
BccI CCATC 3 cut(s) 569, 632, 889
BciT130I CCWGG 1 cut(s) 256
BclI TGATCA 3 cut(s) 630, 876, 973
BcnI CCSGG 1 cut(s) 1262
BfaI CTAG 2 cut(s) 669, 1221
BisI GCNGC 5 cut(s) 95, 416, 419, 606, 1313
BlsI GCNGC 5 cut(s) 96, 417, 420, 607, 1314
BmcAI AGTACT 1 cut(s) 1184
Bme1390I CCNGG 2 cut(s) 256, 1262
Bme18I GGWCC 1 cut(s) 1093
BmgT120I GGNCC 1 cut(s) 1093
BmrFI CCNGG 2 cut(s) 256, 1262
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 924
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpmI CTGGAG 1 cut(s) 1217
Bpu10I CCTNAGC 1 cut(s) 843
BpuEI CTTGAG 4 cut(s) 26, 48, 200, 310
BpuMI CCSGG 1 cut(s) 1262
BsaHI GRCGYC 2 cut(s) 201, 1068
BsaJI CCNNGG 2 cut(s) 15, 57
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 247, 1226
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 1031
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 15, 57
BseGI GGATG 2 cut(s) 553, 904
BseLI CCNNNNNNNGG 3 cut(s) 195, 247, 1226
BseMI GCAATG 1 cut(s) 1031
BseMII CTCAG 3 cut(s) 296, 365, 834
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 5 cut(s) 106, 405, 427, 617, 1324
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 675
BshFI GGCC 2 cut(s) 1260, 1283
BsiSI CCGG 1 cut(s) 1261
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 3 cut(s) 195, 247, 1226
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 2 cut(s) 1260, 1283
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 4 cut(s) 630, 876, 973, 1249
BspACI CCGC 3 cut(s) 30, 195, 479
BspANI GGCC 2 cut(s) 1260, 1283
BspCNI CTCAG 3 cut(s) 295, 364, 835
BsrDI GCAATG 1 cut(s) 1031
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 15, 57
BssMI GATC 4 cut(s) 630, 876, 973, 1249
BssNI GRCGYC 2 cut(s) 201, 1068
BssT1I CCWWGG 2 cut(s) 15, 57
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 3 cut(s) 733, 1093, 1133
Bst6I CTCTTC 1 cut(s) 1272
BstACI GRCGYC 2 cut(s) 201, 1068
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 1304
BstDEI CTNAG 3 cut(s) 282, 351, 843
BstF5I GGATG 2 cut(s) 553, 904
BstKTI GATC 4 cut(s) 633, 879, 976, 1252
BstMBI GATC 4 cut(s) 630, 876, 973, 1249
BstMWI GCNNNNNNNGC 4 cut(s) 680, 689, 698, 1312
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 3 cut(s) 184, 363, 1306
BstSCI CCNGG 2 cut(s) 254, 1260
BstV1I GCAGC 5 cut(s) 106, 405, 427, 617, 1324
BstV2I GAAGAC 1 cut(s) 924
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 1260, 1283
BtsCI GGATG 2 cut(s) 553, 904
BtsIMutI CAGTG 2 cut(s) 270, 692
Cac8I GCNNGC 1 cut(s) 1304
Cfr13I GGNCC 1 cut(s) 1093
CseI GACGC 1 cut(s) 1076
Csp6I GTAC 5 cut(s) 20, 184, 790, 1183, 1217
CviAII CATG 7 cut(s) 181, 360, 505, 1023, 1052, 1256, 1303
CviQI GTAC 5 cut(s) 20, 184, 790, 1183, 1217
DdeI CTNAG 3 cut(s) 282, 351, 843
DpnI GATC 4 cut(s) 632, 878, 975, 1251
DpnII GATC 4 cut(s) 630, 876, 973, 1249
DraI TTTAAA 1 cut(s) 822
EaeI YGGCCR 1 cut(s) 1258
Eam1104I CTCTTC 1 cut(s) 1272
EarI CTCTTC 1 cut(s) 1272
EciI GGCGGA 1 cut(s) 494
Eco130I CCWWGG 2 cut(s) 15, 57
Eco24I GRGCYC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 1093
Eco57I CTGAAG 2 cut(s) 716, 1035
EcoRI GAATTC 1 cut(s) 1027
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 15, 57
EcoT22I ATGCAT 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 347
ErhI CCWWGG 2 cut(s) 15, 57
FaeI CATG 7 cut(s) 184, 363, 508, 1026, 1055, 1259, 1306
FaqI GGGAC 1 cut(s) 212
FatI CATG 7 cut(s) 180, 359, 504, 1022, 1051, 1255, 1302
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 1 cut(s) 1207
FbaI TGATCA 3 cut(s) 630, 876, 973
Fnu4HI GCNGC 5 cut(s) 95, 416, 419, 606, 1313
FokI GGATG 2 cut(s) 560, 911
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 5 cut(s) 95, 416, 419, 606, 1313
FspBI CTAG 2 cut(s) 669, 1221
GluI GCNGC 5 cut(s) 95, 416, 419, 606, 1313
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 1217
HaeIII GGCC 2 cut(s) 1260, 1283
HapII CCGG 1 cut(s) 1261
HgaI GACGC 1 cut(s) 1076
Hin1I GRCGYC 2 cut(s) 201, 1068
Hin1II CATG 7 cut(s) 184, 363, 508, 1026, 1055, 1259, 1306
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 2 cut(s) 47, 349
HpaII CCGG 1 cut(s) 1261
HphI GGTGA 3 cut(s) 116, 154, 230
Hpy166II GTNNAC 3 cut(s) 51, 561, 838
Hpy188I TCNGA 5 cut(s) 285, 301, 377, 876, 1061
Hpy188III TCNNGA 5 cut(s) 801, 892, 907, 1158, 1196
Hpy8I GTNNAC 3 cut(s) 51, 561, 838
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 4 cut(s) 140, 691, 1166, 1263
HpyCH4III ACNGT 3 cut(s) 733, 1093, 1133
HpyCH4IV ACGT 2 cut(s) 22, 201
HpyF10VI GCNNNNNNNGC 4 cut(s) 680, 689, 698, 1312
HpyF3I CTNAG 3 cut(s) 282, 351, 843
HpySE526I ACGT 2 cut(s) 22, 201
Hsp92I GRCGYC 2 cut(s) 201, 1068
Hsp92II CATG 7 cut(s) 184, 363, 508, 1026, 1055, 1259, 1306
Ksp22I TGATCA 3 cut(s) 630, 876, 973
Kzo9I GATC 4 cut(s) 630, 876, 973, 1249
Lsp1109I GCAGC 5 cut(s) 106, 405, 427, 617, 1324
LweI GCATC 1 cut(s) 538
MaeI CTAG 2 cut(s) 669, 1221
MaeII ACGT 2 cut(s) 22, 201
MaeIII GTNAC 3 cut(s) 268, 470, 966
MalI GATC 4 cut(s) 632, 878, 975, 1251
MboI GATC 4 cut(s) 630, 876, 973, 1249
MboII GAAGA 3 cut(s) 924, 1289, 1298
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 4 cut(s) 36, 437, 922, 1027
MlyI GAGTC 2 cut(s) 56, 343
Mph1103I ATGCAT 1 cut(s) 155
MseI TTAA 4 cut(s) 821, 1128, 1139, 1296
MslI CAYNNNNRTG 1 cut(s) 1307
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 1 cut(s) 1261
MspR9I CCNGG 2 cut(s) 256, 1262
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 4 cut(s) 680, 689, 698, 1312
NciI CCSGG 1 cut(s) 1262
NdeI CATATG 1 cut(s) 1207
NdeII GATC 4 cut(s) 630, 876, 973, 1249
NlaIII CATG 7 cut(s) 184, 363, 508, 1026, 1055, 1259, 1306
NmeAIII GCCGAG 1 cut(s) 564
NmuCI GTSAC 1 cut(s) 268
NsiI ATGCAT 1 cut(s) 155
NspI RCATGY 3 cut(s) 184, 363, 1306
PaeI GCATGC 1 cut(s) 1306
PciI ACATGT 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 563
PctI GAATGC 1 cut(s) 421
PfoI TCCNGGA 1 cut(s) 254
PkrI GCNGC 5 cut(s) 96, 417, 420, 607, 1314
PleI GAGTC 2 cut(s) 55, 343
PpsI GAGTC 2 cut(s) 55, 343
PscI ACATGT 1 cut(s) 180
PsiI TTATAA 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 254
PspPI GGNCC 1 cut(s) 1093
PsrI GAACNNNNNNTAC 2 cut(s) 1032, 1064
PvuII CAGCTG 1 cut(s) 418
RsaI GTAC 5 cut(s) 21, 185, 791, 1184, 1218
RsaNI GTAC 5 cut(s) 20, 184, 790, 1183, 1217
RseI CAYNNNNRTG 1 cut(s) 1307
SaqAI TTAA 4 cut(s) 821, 1128, 1139, 1296
SatI GCNGC 5 cut(s) 95, 416, 419, 606, 1313
Sau3AI GATC 4 cut(s) 630, 876, 973, 1249
Sau96I GGNCC 1 cut(s) 1093
ScaI AGTACT 1 cut(s) 1184
SchI GAGTC 2 cut(s) 56, 343
ScrFI CCNGG 2 cut(s) 256, 1262
SduI GDGCHC 1 cut(s) 347
SfaNI GCATC 1 cut(s) 538
SinI GGWCC 1 cut(s) 1093
SmiMI CAYNNNNRTG 1 cut(s) 1307
SmlI CTYRAG 4 cut(s) 41, 63, 215, 289
SmoI CTYRAG 4 cut(s) 41, 63, 215, 289
SphI GCATGC 1 cut(s) 1306
Sse9I AATT 4 cut(s) 36, 437, 922, 1027
SsiI CCGC 3 cut(s) 30, 195, 479
SspI AATATT 1 cut(s) 856
SspMI CTAG 2 cut(s) 669, 1221
StyD4I CCNGG 2 cut(s) 254, 1260
StyI CCWWGG 2 cut(s) 15, 57
TaaI ACNGT 3 cut(s) 733, 1093, 1133
TaiI ACGT 2 cut(s) 25, 204
TaqI TCGA 7 cut(s) 204, 225, 528, 566, 651, 891, 906
TasI AATT 4 cut(s) 36, 437, 922, 1027
TatI WGTACW 3 cut(s) 183, 789, 1182
Tru1I TTAA 4 cut(s) 821, 1128, 1139, 1296
Tru9I TTAA 4 cut(s) 821, 1128, 1139, 1296
TscAI CASTG 2 cut(s) 277, 699
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 5 cut(s) 94, 415, 418, 605, 1312
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 5 cut(s) 493, 713, 915, 1020, 1040
TspRI CASTG 2 cut(s) 277, 699
VpaK11BI GGWCC 1 cut(s) 1093
XapI RAATTY 2 cut(s) 36, 1027
XceI RCATGY 3 cut(s) 184, 363, 1306
XspI CTAG 2 cut(s) 669, 1221
ZraI GACGTC 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 1184
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.