Rroxscaffold_6G00408190

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001542
Physical Location & Seq
Forward (+)
30698608 .. 30699366
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408190.1

Sequence Viewer

Length: 759 bp
ATGCGGGCACGTCGATTATGCCCTCAAGGTTTTCGACCAAATGCCTCACCGAAACTTGGTTTCCTGGACTGCAATGGTAGCTGGGTTTTCTCAGAACTCGAGGTTCTCGGAGAGTTTCAAAGCCTTTTCCCAGATGAGAAGTGCTGGGAGAGCCCGACCCAGTTTGCATTTGCAAGTGTCATCAGAGCTTGTGTGGTTCTTGGGTCGGTTGAGATTGGGAGGCAGCTGCATTCTCTTGCTTTGAAATTGGGCTTGGCTTGTGAGCTGTTTGTGGGTAGTAACTTGGCGGATATGTATTCGAAATGTGGGTTCATGGTTGAGGCTTGTAAGGTTTTCGAGGAAATGCCGAGTAAGGATGCTGTGTCTTGGACTTCGATGATTGATGGGTATGCAAAAGGTGCGGATTTTGAGGCAGCTTTACTGAGTTATCAGAGGATGATCAATGATGGGATTGGTGTAGATAAATATGTTGTTTCTAGTGCATTGAGTGCTTGTTCTGCACTGAAGGCTTGTCAGTTTGGAAAGTGTGTTCATTCGACGGTTGTGAAGTTAGGATTGGAAGTAGTGGTTGCTGTGGGAAATGCTCTGGTTGATATGTACTCGAAATCAGGAGATATGGAGAGTGCTTTAAATGTGTTTCGTGTTCACCCTGAGTGTAGAAATATTGTGTCGTATTCCTCTCTGATCAATGGTTATGTCGAGATGGATGAAATCGAGAAGGCTTTTAGTGTGTTTGTTGACCTGCAGAGGGGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

252

Amino Acids

27.55

Weight (kDa)

5.19

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 750
AciI CCGC 3 cut(s) 4, 287, 401
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 2 cut(s) 56, 748
AgsI TTSAA 2 cut(s) 119, 244
AjiI CACGTC 1 cut(s) 11
AjnI CCWGG 1 cut(s) 63
AjuI GAANNNNNNNTTGG 4 cut(s) 236, 268, 539, 571
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
AluBI AGCT 5 cut(s) 81, 188, 226, 265, 416
AluI AGCT 5 cut(s) 81, 188, 226, 265, 416
Ama87I CYCGRG 1 cut(s) 98
ApeKI GCWGC 3 cut(s) 223, 226, 413
AsuHPI GGTGA 2 cut(s) 39, 638
AsuII TTCGAA 1 cut(s) 299
AvaI CYCGRG 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 213, 235, 425
BccI CCATC 3 cut(s) 377, 440, 697
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 2 cut(s) 438, 684
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 743
BfuAI ACCTGC 1 cut(s) 750
BisI GCNGC 3 cut(s) 224, 227, 414
BlsI GCNGC 3 cut(s) 225, 228, 415
Bme1390I CCNGG 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 748
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 65
BseGI GGATG 3 cut(s) 361, 441, 712
BseLI CCNNNNNNNGG 2 cut(s) 56, 748
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 3 cut(s) 105, 413, 642
BseNI ACTGG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 10
BseXI GCAGC 3 cut(s) 213, 235, 425
BseYI CCCAGC 2 cut(s) 81, 144
BsgI GTGCAG 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 56, 748
BsmI GAATGC 1 cut(s) 229
BsoBI CYCGRG 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 10, 155
Bsp143I GATC 2 cut(s) 438, 684
BspACI CCGC 3 cut(s) 4, 287, 401
BspCNI CTCAG 3 cut(s) 104, 414, 643
BspMAI CTGCAG 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 750
BspT104I TTCGAA 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 79
BsrI ACTGG 1 cut(s) 160
BssMI GATC 2 cut(s) 438, 684
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 541
BstAPI GCANNNNNTGC 2 cut(s) 398, 488
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 91, 422, 651
BstF5I GGATG 3 cut(s) 361, 441, 712
BstKTI GATC 2 cut(s) 441, 687
BstMBI GATC 2 cut(s) 438, 684
BstMWI GCNNNNNNNGC 6 cut(s) 78, 150, 398, 488, 497, 506
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 743
BstSLI GKGCMC 1 cut(s) 10
BstV1I GCAGC 3 cut(s) 213, 235, 425
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 3 cut(s) 361, 441, 712
BtsIMutI CAGTG 1 cut(s) 500
BveI ACCTGC 1 cut(s) 750
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 598
CviAII CATG 1 cut(s) 313
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 3 cut(s) 91, 422, 651
DpnI GATC 2 cut(s) 440, 686
DpnII GATC 2 cut(s) 438, 684
DraI TTTAAA 1 cut(s) 630
EciI GGCGGA 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 1 cut(s) 316
FaiI YATR 8 cut(s) 19, 293, 314, 390, 468, 596, 617, 696
FatI CATG 1 cut(s) 312
FbaI TGATCA 2 cut(s) 438, 684
Fnu4HI GCNGC 3 cut(s) 224, 227, 414
FokI GGATG 3 cut(s) 368, 448, 719
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 224, 227, 414
FspBI CTAG 1 cut(s) 477
GluI GCNGC 3 cut(s) 224, 227, 414
GsaI CCCAGC 2 cut(s) 85, 148
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HphI GGTGA 2 cut(s) 39, 638
Hpy166II GTNNAC 2 cut(s) 646, 739
Hpy188I TCNGA 5 cut(s) 94, 110, 185, 432, 684
Hpy188III TCNNGA 3 cut(s) 609, 700, 715
Hpy8I GTNNAC 2 cut(s) 646, 739
Hpy99I CGWCG 2 cut(s) 15, 541
HpyAV CCTTC 2 cut(s) 499, 712
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 8 cut(s) 72, 167, 173, 229, 392, 482, 500, 745
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 150, 398, 488, 497, 506
HpyF3I CTNAG 3 cut(s) 91, 422, 651
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 316
Ksp22I TGATCA 2 cut(s) 438, 684
Kzo9I GATC 2 cut(s) 438, 684
Lsp1109I GCAGC 3 cut(s) 213, 235, 425
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 440, 686
MboI GATC 2 cut(s) 438, 684
MhlI GDGCHC 2 cut(s) 10, 155
MluCI AATT 1 cut(s) 245
MseI TTAA 1 cut(s) 629
MspA1I CMGCKG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 6 cut(s) 78, 150, 398, 488, 497, 506
NdeII GATC 2 cut(s) 438, 684
NlaIII CATG 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 372
NspV TTCGAA 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 98
PctI GAATGC 1 cut(s) 229
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 3 cut(s) 225, 228, 415
Psp6I CCWGG 1 cut(s) 63
PspFI CCCAGC 2 cut(s) 81, 144
PspGI CCWGG 1 cut(s) 63
PspXI VCTCGAGB 1 cut(s) 98
PstI CTGCAG 1 cut(s) 747
PvuII CAGCTG 1 cut(s) 226
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 3 cut(s) 224, 227, 414
Sau3AI GATC 2 cut(s) 438, 684
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 2 cut(s) 10, 155
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 743
Sfr274I CTCGAG 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 24, 98
SmoI CTYRAG 2 cut(s) 24, 98
Sse9I AATT 1 cut(s) 245
SsiI CCGC 3 cut(s) 4, 287, 401
SspI AATATT 1 cut(s) 664
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 1 cut(s) 13
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 597
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TscAI CASTG 1 cut(s) 507
TseI GCWGC 3 cut(s) 223, 226, 413
TspDTI ATGAA 3 cut(s) 301, 521, 723
TspRI CASTG 1 cut(s) 507
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.