Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001542

Physical Location & Seq

Genomic Coordinates Reverse (-)

19083516 .. 19083899

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG208600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAATTTTCAACCCTTGCGCCTTTTTGGCGGCCAAATTCTGAAAGAGGAGTCGACCACCTTGGCGCAAGTCATCCAAACCTACGCAAAAACCAAGCAGCTAAACAAAGGCAAAGAGCTCCACGCTCACCTCCTACGCACTCATTACCCACTATGCCTCTTCCTCACCAACCACCTCCTCAACATGTACTCCAAATGCGGGCACGTCGATTACGCCCCACTGAAACTTGGTTTCCTGGACTGCAATGGTAACTGGGTTTTCTCAGAACTTGAGGTTCTCCGAGAGTTTCAAGGCCTTTTCGCAGATGAGAATTGCTGGGGAGAGCCCGACCCAGTTTGCATTTGCAAGTGTCATCAGAGCTTGTGTGGTTCTTGGGTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

127

Amino Acids

14.5

Weight (kDa)

6.57

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18620
malus_domestica	MD12G1035700.v1.1
prunus_persica	Prupe.7G110800_v2.0.a1
pyrus_communis	pycom12g02350
rosa_chinensis	RchiOBHm_Chr3g0473201 RchiOBHm_Chr3g0473271 RchiOBHm_Chr3g0473331 RchiOBHm_Chr3g0473361 RchiOBHm_Chr3g0473371 RchiOBHm_Chr3g0473431 RchiOBHm_Chr3g0473471 RchiOBHm_Chr3g0473501 RchiOBHm_Chr3g0473511 RchiOBHm_Chr3g0473551 RchiOBHm_Chr7g0233141
rosa_laevigata	RLG00000001293 RLG00000024007 RLG00000024017
rosa_multiflora	Rmu_sc0000908.1_g000014 Rmu_sc0000908.1_g000027 Rmu_sc0003069.1_g000052 Rmu_sc0003069.1_g000057 Rmu_sc0004463.1_g000001 Rmu_sc0010262.1_g000001 Rmu_sc0016164.1_g000017
rosa_roxburghii	Rroxscaffold_6G00408080 Rroxscaffold_6G00408190 Rroxscaffold_6G00408210
rosa_rugosa	Rorug03G0132200 Rorug03G0132500 Rorug07G0278700
rosa_samantha	Rh3BG210400 Rh3BG210700 Rh3BG211000 Rh3BG211100 Rh3BG211300 Rh3BG211900 Rh3BG212100 Rh3BG212300 Rh3CG207600 Rh3CG207800 Rh3CG208300 Rh3CG208400 Rh3CG208600 Rh3CG208800 Rh3DG207500 Rh3DG207900 Rh7BG406800 Rh7BG406900
rosa_wichuraiana	Rw0G008140 Rw0G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	2 cut(s)	30, 198
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	2 cut(s)	4, 36
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	11, 290
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	3 cut(s)	100, 118, 360
AluI	AGCT	3 cut(s)	100, 118, 360
Alw21I	GWGCWC	1 cut(s)	120
AoxI	GGCC	2 cut(s)	31, 292
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	2 cut(s)	4, 36
AspLEI	GCGC	2 cut(s)	21, 67
AsuHPI	GGTGA	2 cut(s)	119, 157
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	2 cut(s)	120, 327
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	27
BisI	GCNGC	2 cut(s)	31, 98
BlsI	GCNGC	2 cut(s)	32, 99
Bme1390I	CCNGG	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	2 cut(s)	262, 326
BmuI	ACTGGG	2 cut(s)	262, 326
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse1I	ACTGG	2 cut(s)	257, 332
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	257, 332
BseRI	GAGGAG	2 cut(s)	62, 167
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	315
BshFI	GGCC	2 cut(s)	33, 294
BsiHKAI	GWGCWC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	198
BsnI	GGCC	2 cut(s)	33, 294
Bsp1286I	GDGCHC	3 cut(s)	120, 204, 327
BspACI	CCGC	2 cut(s)	30, 198
BspANI	GGCC	2 cut(s)	33, 294
BspCNI	CTCAG	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	257, 332
BssECI	CCNNGG	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	72
BstHHI	GCGC	2 cut(s)	21, 67
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	33, 294
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	200
CfoI	GCGC	2 cut(s)	21, 67
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	6 cut(s)	33, 100, 118, 294, 325, 360
CviKI_1	RGCY	6 cut(s)	33, 100, 118, 294, 325, 360
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	294
Eco24I	GRGCYC	2 cut(s)	120, 327
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	120, 327
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	187
FaiI	YATR	2 cut(s)	154, 185
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	31, 98
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	2 cut(s)	120, 327
Fsp4HI	GCNGC	2 cut(s)	31, 98
GlaI	GCGC	2 cut(s)	20, 66
GluI	GCNGC	2 cut(s)	31, 98
GsaI	CCCAGC	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	33, 294
HhaI	GCGC	2 cut(s)	21, 67
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	2 cut(s)	19, 65
HinP1I	GCGC	2 cut(s)	19, 65
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	50
HphI	GGTGA	2 cut(s)	119, 157
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	4 cut(s)	42, 265, 281, 357
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	243, 339, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	262
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	2 cut(s)	19, 65
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	5 cut(s)	221, 238, 248, 301, 345
Lsp1109I	GCAGC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	3 cut(s)	120, 204, 327
MluCI	AATT	3 cut(s)	4, 36, 310
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	7 cut(s)	40, 140, 167, 173, 185, 188, 265
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	187
NspI	RCATGY	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	294
PciI	ACATGT	1 cut(s)	183
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	32, 99
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	52
SatI	GCNGC	2 cut(s)	31, 98
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	3 cut(s)	120, 204, 327
SetI	ASST	9 cut(s)	62, 83, 102, 120, 132, 177, 207, 276, 362
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	4, 36, 310
SseBI	AGGCCT	1 cut(s)	294
SsiI	CCGC	2 cut(s)	30, 198
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	53, 207
TasI	AATT	3 cut(s)	4, 36, 310
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	33
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	225
XapI	RAATTY	2 cut(s)	4, 36
XceI	RCATGY	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.