RchiOBHm_Chr3g0473271

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
19163150 .. 19163629
480 bp
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UTR
Exon/CDS
Intron
PRQ43895

Sequence Viewer

Length: 480 bp
ATGTATTCGAAATGTGGGTTCATGGTTGAGGCTTATAAAGTTTTCGAGGAAATGCCGAGTAAGGATGCTGTGTCGTGGACTTCGATGATTGATGGGTATGCAAAGAGTGGGGATTTTGAGGCAACTTTACTGAGTTATCAGAGGATGATCAATGATGGGATTGGTGTAGATAAATATGTTGTTTCTAGTGCATTGAGTGCTTCTTCTGCACTGAAGGCTTGTCAGTTTGGAAAGCGTGTTCATTCGACGGTTGTGAAGTTCGGATTGGAAGTAGAGGTTGCTGTGGGAAATGCTCTGGTTGATATGTACTCGAAATCAGGTGATATGGTGAGTGCTTTAAATGTGTTTCGGGTTGACCCTGAGTGCAGAAATATTGTGTCGTATTCCTCTGTGATCAATGGTTATGTTGAGATGGATGAAATCGAGAAGGCTTTTAGTGTGTTTGTTGACTTACAGAGAAGGGGAGCTGAGCCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

17.51

Weight (kDa)

4.91

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 24 - 54 4.7e-06 PPR repeat
PPR_2 PF13041 123 - 159 7.1e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 1 cut(s) 467
AluI AGCT 1 cut(s) 467
AsuHPI GGTGA 2 cut(s) 332, 340
AsuII TTCGAA 1 cut(s) 8
BccI CCATC 3 cut(s) 86, 149, 406
BclI TGATCA 2 cut(s) 147, 393
BfaI CTAG 1 cut(s) 186
BlpI GCTNAGC 1 cut(s) 468
BmsI GCATC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 8
BseGI GGATG 3 cut(s) 70, 150, 421
BseMII CTCAG 3 cut(s) 122, 351, 459
BsgI GTGCAG 2 cut(s) 192, 385
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 147, 393
Bsp1720I GCTNAGC 1 cut(s) 468
BspCNI CTCAG 3 cut(s) 123, 352, 460
BspT104I TTCGAA 1 cut(s) 8
BssMI GATC 2 cut(s) 147, 393
Bst4CI ACNGT 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 197
BstBI TTCGAA 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 131, 360, 468
BstF5I GGATG 3 cut(s) 70, 150, 421
BstKTI GATC 2 cut(s) 150, 396
BstMBI GATC 2 cut(s) 147, 393
BstMWI GCNNNNNNNGC 3 cut(s) 197, 206, 215
BtsCI GGATG 3 cut(s) 70, 150, 421
BtsIMutI CAGTG 1 cut(s) 209
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 22
CviJI RGCY 5 cut(s) 32, 218, 431, 467, 472
CviKI_1 RGCY 5 cut(s) 32, 218, 431, 467, 472
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 3 cut(s) 131, 360, 468
DpnI GATC 2 cut(s) 149, 395
DpnII GATC 2 cut(s) 147, 393
DraI TTTAAA 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 233
FaeI CATG 1 cut(s) 25
FaiI YATR 7 cut(s) 23, 36, 99, 177, 305, 326, 405
FatI CATG 1 cut(s) 21
FbaI TGATCA 2 cut(s) 147, 393
FokI GGATG 3 cut(s) 77, 157, 428
FspBI CTAG 1 cut(s) 186
Hin1II CATG 1 cut(s) 25
HincII GTYRAC 2 cut(s) 355, 448
HindII GTYRAC 2 cut(s) 355, 448
HphI GGTGA 2 cut(s) 332, 340
Hpy166II GTNNAC 3 cut(s) 78, 355, 448
Hpy188I TCNGA 2 cut(s) 141, 263
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 3 cut(s) 78, 355, 448
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 208, 421, 453
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 101, 191, 209, 366
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 206, 215
HpyF3I CTNAG 3 cut(s) 131, 360, 468
Hsp92II CATG 1 cut(s) 25
Ksp22I TGATCA 2 cut(s) 147, 393
Kzo9I GATC 2 cut(s) 147, 393
LmnI GCTCC 1 cut(s) 464
LpnPI CCDG 3 cut(s) 281, 303, 372
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 186
MalI GATC 2 cut(s) 149, 395
MboI GATC 2 cut(s) 147, 393
MboII GAAGA 1 cut(s) 195
MluCI AATT 1 cut(s) 475
MnlI CCTC 6 cut(s) 22, 40, 112, 135, 268, 397
MseI TTAA 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 197, 206, 215
NdeII GATC 2 cut(s) 147, 393
NlaIII CATG 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 81
NspV TTCGAA 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PsiI TTATAA 1 cut(s) 36
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 338
Sau3AI GATC 2 cut(s) 147, 393
SetI ASST 3 cut(s) 279, 322, 469
SfaNI GCATC 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 8
Sse9I AATT 1 cut(s) 475
SspI AATATT 1 cut(s) 373
SspMI CTAG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 6 cut(s) 8, 45, 83, 245, 311, 423
TasI AATT 1 cut(s) 475
TatI WGTACW 1 cut(s) 306
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 216
TspDTI ATGAA 3 cut(s) 10, 230, 432
TspRI CASTG 1 cut(s) 216
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.