RchiOBHm_Chr3g0473501

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001542
Physical Location & Seq
Reverse (-)
19329852 .. 19330784
933 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43916

Sequence Viewer

Length: 315 bp
ATGGTCCAGGCAGGAGTGAAACCAAATGCAATAACATTTATCAGTCTTTTAACAGGTTGTAGCCATTTTGTATTGGTAGAGGAAGGTTTAAAGTACTTTTACTCTATGGAGAAAACATATGGCATAGTACCTAGAGCTGGACATTACTCTTGCATTATTGATTTACTTGGCAGGGCTGGAAGGCTTGAAGAGGCCGAAGATTTTATTAACAGCATGCCAATGCAGCCAAATGCTTTTGGGTGGTGCCCCTTTCTTGGTGCTTGCACGATTCATGGTGATAAAGAGGGGCATATATACTGGCAGCGGAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

104

Amino Acids

11.72

Weight (kDa)

6.39

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AciI CCGC 1 cut(s) 304
AfaI GTAC 2 cut(s) 95, 129
AfiI CCNNNNNNNGG 2 cut(s) 137, 254
AgsI TTSAA 1 cut(s) 188
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 223, 301
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 8
BfaI CTAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 224, 302
BlsI GCNGC 2 cut(s) 225, 303
BmcAI AGTACT 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 254
Bse1I ACTGG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 137, 254
BseNI ACTGG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 248
BseXI GCAGC 1 cut(s) 235
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 137, 254
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 248
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 215, 262
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 215, 262
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 94, 128
CviAII CATG 2 cut(s) 214, 272
CviJI RGCY 6 cut(s) 63, 137, 176, 184, 194, 226
CviKI_1 RGCY 6 cut(s) 63, 137, 176, 184, 194, 226
CviQI GTAC 2 cut(s) 94, 128
DraI TTTAAA 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 217, 275
FaiI YATR 9 cut(s) 107, 118, 120, 125, 215, 273, 291, 293, 295
FatI CATG 2 cut(s) 213, 271
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 224, 302
Fsp4HI GCNGC 2 cut(s) 224, 302
FspBI CTAG 1 cut(s) 132
GluI GCNGC 2 cut(s) 224, 302
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 2 cut(s) 217, 275
HinfI GANTC 1 cut(s) 268
HphI GGTGA 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 77, 174
HpyCH4V TGCA 4 cut(s) 29, 153, 223, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 217, 275
LpnPI CCDG 6 cut(s) 20, 39, 123, 157, 162, 283
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 1 cut(s) 132
MboII GAAGA 2 cut(s) 200, 209
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 1 cut(s) 310
MnlI CCTC 3 cut(s) 73, 184, 277
MseI TTAA 3 cut(s) 50, 89, 207
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeI CATATG 1 cut(s) 118
NlaIII CATG 2 cut(s) 217, 275
NlaIV GGNNCC 1 cut(s) 245
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 2 cut(s) 225, 303
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 95, 129
RsaNI GTAC 2 cut(s) 94, 128
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 50, 89, 207
SatI GCNGC 2 cut(s) 224, 302
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 248
SetI ASST 4 cut(s) 58, 88, 133, 139
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 218
SphI GCATGC 1 cut(s) 217
Sse9I AATT 1 cut(s) 310
SsiI CCGC 1 cut(s) 304
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 6
TasI AATT 1 cut(s) 310
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 3 cut(s) 50, 89, 207
Tru9I TTAA 3 cut(s) 50, 89, 207
TseI GCWGC 2 cut(s) 223, 301
TspDTI ATGAA 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 1 cut(s) 217
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.