Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000908.1

Orthogroup ID

OG0001542

Physical Location & Seq

Genomic Coordinates Forward (+)

63820 .. 64987

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000908.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgagtattcaacccttgctacgttctggcggtcaaattctcaaggagtccaccaccttggctcaagttatccaaacctacgcaaaaaccaagcagctaaacaaaggcaaagtgcttcacgctcacctccttcgcactcattacccacaatgcattttcctcaccaaccacctcctcaacatgtactccaaatgcggggacgtcgattacgccctcaaggttttcgaccaaatgcctcaccgaaacttggtttcctggactgcaatggtcactgggttttctcagaacttgaggttctccgagagtttcaaggccttttcccagatgagaagtgctggggagagcccgacccagtttgcgtttgcaagtgtcatcagagcttgtgtggttcttgggtcggttgagattgggaggcagctgcattctcttgctttgaaattgggtttggcttgtgagttgtttgtgggtagtaacttggcggatatgtattcgaaatgtggggtcatggttgaggcttgtcaagtttttgaggaaatgccgagtaaggatgctgtgtcttggacttcgatgattgatgggtatgcaaagagtggggattttgaggcagctttactgagttatcagaggatgatcaatgatgggattggtgtagataaatatgttgtttctagtgcattgagtgcttgttctgcactgaaggcttgtcagtttggaaagtgtgttcattcgacagttgtgaagtttggatcggaagtagaggttgctgtgggaaatgctctgattgatatgtactcgaaatcaggagatatggagagtgctttaaatgtgtttcggagaaggggagttgagcctaatcagctcactttctctagcttgatcaaggcttgtgccaaccaagctgcatttgaacaagggatccaacttcatgctcaggtggtcaagtttaattttgatagagacaattttttgtcttctgttcttgttgaaatgtatggagagtgcgggttgcttgatcactcaatacaagtgtttgacgaggtagccaccccgactgaagttgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

354

Amino Acids

38.88

Weight (kDa)

6.5

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18620
malus_domestica	MD12G1035700.v1.1
prunus_persica	Prupe.7G110800_v2.0.a1
pyrus_communis	pycom12g02350
rosa_chinensis	RchiOBHm_Chr3g0473201 RchiOBHm_Chr3g0473271 RchiOBHm_Chr3g0473331 RchiOBHm_Chr3g0473361 RchiOBHm_Chr3g0473371 RchiOBHm_Chr3g0473431 RchiOBHm_Chr3g0473471 RchiOBHm_Chr3g0473501 RchiOBHm_Chr3g0473511 RchiOBHm_Chr3g0473551 RchiOBHm_Chr7g0233141
rosa_laevigata	RLG00000001293 RLG00000024007 RLG00000024017
rosa_multiflora	Rmu_sc0000908.1_g000014 Rmu_sc0000908.1_g000027 Rmu_sc0003069.1_g000052 Rmu_sc0003069.1_g000057 Rmu_sc0004463.1_g000001 Rmu_sc0010262.1_g000001 Rmu_sc0016164.1_g000017
rosa_roxburghii	Rroxscaffold_6G00408080 Rroxscaffold_6G00408190 Rroxscaffold_6G00408210
rosa_rugosa	Rorug03G0132200 Rorug03G0132500 Rorug07G0278700
rosa_samantha	Rh3BG210400 Rh3BG210700 Rh3BG211000 Rh3BG211100 Rh3BG211300 Rh3BG211900 Rh3BG212100 Rh3BG212300 Rh3CG207600 Rh3CG207800 Rh3CG208300 Rh3CG208400 Rh3CG208600 Rh3CG208800 Rh3DG207500 Rh3DG207900 Rh7BG406800 Rh7BG406900
rosa_wichuraiana	Rw0G008140 Rw0G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AciI	CCGC	4 cut(s)	30, 195, 479, 1002
AclWI	GGATC	3 cut(s)	754, 910, 923
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	2 cut(s)	185, 791
AfiI	CCNNNNNNNGG	2 cut(s)	195, 247
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	5 cut(s)	11, 310, 436, 908, 986
AjnI	CCWGG	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AloI	GAACNNNNNNTCC	4 cut(s)	705, 737, 900, 932
AluBI	AGCT	7 cut(s)	97, 380, 418, 608, 859, 873, 899
AluI	AGCT	7 cut(s)	97, 380, 418, 608, 859, 873, 899
Alw26I	GTCTC	1 cut(s)	951
AlwI	GGATC	3 cut(s)	754, 910, 923
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	5 cut(s)	94, 415, 418, 605, 899
ApoI	RAATTY	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	116, 154, 230
AsuII	TTCGAA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	915
BanII	GRGCYC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	963
BbvI	GCAGC	5 cut(s)	106, 405, 427, 617, 886
BccI	CCATC	2 cut(s)	569, 632
BciT130I	CCWGG	1 cut(s)	256
BclI	TGATCA	3 cut(s)	630, 876, 1012
BcoDI	GTCTC	1 cut(s)	951
BfaI	CTAG	2 cut(s)	669, 870
BisI	GCNGC	5 cut(s)	95, 416, 419, 606, 900
BlsI	GCNGC	5 cut(s)	96, 417, 420, 607, 901
Bme1390I	CCNGG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	917
BmrFI	CCNGG	1 cut(s)	256
BmrI	ACTGGG	2 cut(s)	282, 346
BmsI	GCATC	1 cut(s)	538
BmuI	ACTGGG	2 cut(s)	282, 346
BpiI	GAAGAC	1 cut(s)	963
Bpu10I	CCTNAGC	1 cut(s)	930
Bpu14I	TTCGAA	1 cut(s)	491
BpuEI	CTTGAG	4 cut(s)	26, 48, 200, 310
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 247
Bse1I	ACTGG	2 cut(s)	277, 352
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	2 cut(s)	553, 633
BseLI	CCNNNNNNNGG	2 cut(s)	195, 247
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	296, 605, 944
BseNI	ACTGG	2 cut(s)	277, 352
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	5 cut(s)	106, 405, 427, 617, 886
BseYI	CCCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	675
BshFI	GGCC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	195, 247
BsmAI	GTCTC	1 cut(s)	951
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	5 cut(s)	630, 746, 876, 915, 1012
BspACI	CCGC	4 cut(s)	30, 195, 479, 1002
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	3 cut(s)	295, 606, 943
BspLI	GGNNCC	1 cut(s)	917
BspPI	GGATC	3 cut(s)	754, 910, 923
BspT104I	TTCGAA	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	277, 352
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	5 cut(s)	630, 746, 876, 915, 1012
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	733
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBI	TTCGAA	1 cut(s)	491
BstDEI	CTNAG	3 cut(s)	282, 614, 930
BstF5I	GGATG	2 cut(s)	553, 633
BstKTI	GATC	5 cut(s)	633, 749, 879, 918, 1015
BstMAI	GTCTC	1 cut(s)	951
BstMBI	GATC	5 cut(s)	630, 746, 876, 915, 1012
BstMWI	GCNNNNNNNGC	5 cut(s)	680, 689, 698, 856, 896
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	254
BstV1I	GCAGC	5 cut(s)	106, 405, 427, 617, 886
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	1 cut(s)	915
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	915
BsuRI	GGCC	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	553, 633
BtsIMutI	CAGTG	2 cut(s)	270, 692
Csp6I	GTAC	2 cut(s)	184, 790
CviAII	CATG	4 cut(s)	181, 505, 926, 1062
CviQI	GTAC	2 cut(s)	184, 790
DdeI	CTNAG	3 cut(s)	282, 614, 930
DpnI	GATC	5 cut(s)	632, 748, 878, 917, 1014
DpnII	GATC	5 cut(s)	630, 746, 876, 915, 1012
DraI	TTTAAA	1 cut(s)	822
EciI	GGCGGA	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	184, 508, 929, 1065
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	4 cut(s)	180, 504, 925, 1061
FauI	CCCGC	2 cut(s)	188, 995
FbaI	TGATCA	3 cut(s)	630, 876, 1012
Fnu4HI	GCNGC	5 cut(s)	95, 416, 419, 606, 900
FokI	GGATG	2 cut(s)	560, 640
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	5 cut(s)	95, 416, 419, 606, 900
FspBI	CTAG	2 cut(s)	669, 870
GluI	GCNGC	5 cut(s)	95, 416, 419, 606, 900
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	184, 508, 929, 1065
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	3 cut(s)	116, 154, 230
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	7 cut(s)	285, 301, 377, 624, 751, 780, 834
Hpy188III	TCNNGA	1 cut(s)	801
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	140, 691, 831
HpyCH4III	ACNGT	1 cut(s)	733
HpyCH4IV	ACGT	2 cut(s)	22, 201
HpyCH4V	TGCA	9 cut(s)	153, 263, 365, 421, 584, 674, 692, 902, 1061
HpyF10VI	GCNNNNNNNGC	5 cut(s)	680, 689, 698, 856, 896
HpyF3I	CTNAG	3 cut(s)	282, 614, 930
HpySE526I	ACGT	2 cut(s)	22, 201
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	184, 508, 929, 1065
Ksp22I	TGATCA	3 cut(s)	630, 876, 1012
Kzo9I	GATC	5 cut(s)	630, 746, 876, 915, 1012
LpnPI	CCDG	9 cut(s)	12, 241, 258, 268, 321, 335, 365, 786, 917
Lsp1109I	GCAGC	5 cut(s)	106, 405, 427, 617, 886
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	2 cut(s)	669, 870
MaeII	ACGT	2 cut(s)	22, 201
MaeIII	GTNAC	2 cut(s)	268, 470
MalI	GATC	5 cut(s)	632, 748, 878, 917, 1014
MboI	GATC	5 cut(s)	630, 746, 876, 915, 1012
MboII	GAAGA	1 cut(s)	963
MflI	RGATCY	1 cut(s)	915
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	4 cut(s)	36, 437, 946, 961
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	943
Mph1103I	ATGCAT	1 cut(s)	155
MseI	TTAA	2 cut(s)	821, 945
MspA1I	CMGCKG	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	5 cut(s)	680, 689, 698, 856, 896
NdeII	GATC	5 cut(s)	630, 746, 876, 915, 1012
NlaIII	CATG	4 cut(s)	184, 508, 929, 1065
NlaIV	GGNNCC	1 cut(s)	917
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	155
NspI	RCATGY	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	491
PceI	AGGCCT	1 cut(s)	314
PciI	ACATGT	1 cut(s)	180
PctI	GAATGC	1 cut(s)	421
PfoI	TCCNGGA	1 cut(s)	254
PkrI	GCNGC	5 cut(s)	96, 417, 420, 607, 901
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PscI	ACATGT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	917
PsuI	RGATCY	1 cut(s)	915
PvuII	CAGCTG	1 cut(s)	418
RsaI	GTAC	2 cut(s)	185, 791
RsaNI	GTAC	2 cut(s)	184, 790
SaqAI	TTAA	2 cut(s)	821, 945
SatI	GCNGC	5 cut(s)	95, 416, 419, 606, 900
Sau3AI	GATC	5 cut(s)	630, 746, 876, 915, 1012
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	347
SfaNI	GCATC	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	491
SmlI	CTYRAG	4 cut(s)	41, 63, 215, 289
SmoI	CTYRAG	4 cut(s)	41, 63, 215, 289
Sse9I	AATT	4 cut(s)	36, 437, 946, 961
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	4 cut(s)	30, 195, 479, 1002
SspMI	CTAG	2 cut(s)	669, 870
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	733
TaiI	ACGT	2 cut(s)	25, 204
TaqI	TCGA	6 cut(s)	204, 225, 491, 566, 728, 794
TasI	AATT	4 cut(s)	36, 437, 946, 961
TatI	WGTACW	2 cut(s)	183, 789
Tru1I	TTAA	2 cut(s)	821, 945
Tru9I	TTAA	2 cut(s)	821, 945
TscAI	CASTG	2 cut(s)	277, 699
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	5 cut(s)	94, 415, 418, 605, 899
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	713, 914
TspRI	CASTG	2 cut(s)	277, 699
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	2 cut(s)	669, 870
ZraI	GACGTC	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.