Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0001542

Physical Location & Seq

Genomic Coordinates Forward (+)

231353 .. 232501

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgcctcaccgaaatttggtttcctggactgcaatggtcactgggttttctcagaacttgaggttctccgagatgagaagcgctggggagagccccacccagtttgcatttgcaagtgtcatcagagcttgtgtggttcttgggtcggttgagattgggaggcagctgcattctcttgctttgaaattgggcttggcttgtgagctgagatatgttgaccctgagcgtagaaatattgtgtcgtattcctctctgatcaatggttatgttgagatggatgaaatcgagaaggcttttagtgtgtctgttgacttacaaaagaggggagttgagcctaatcagttcactttctctagcttggtcaaggcctgtgccaaccaagctgcacttgaacgagggattcaacttcatgctcaggttgtcaagtttaattttgataaagacagttttgtgtcttctgttcttgttgatattcatgggaaatgtgggttacttgatcattcaatacaagtgtttgacgaggcaggagtgaaaccaaatgcaataacatttatcagtcttttaacaggttgtagccattctgtattggtagaggaagatttaaagtacttttactctatggagaaaacatatggcatagtacctagagctggacattactcttgcattattgatttacttggcagggctggaaggcttgaagaggccgaagattttattaacagcatgccaatgcagccaaatgctttcgggtggtgcccctttcttggtgcctgcacgattcatggtgataaagaggggcatactggcagcggagaaattgatacagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

277

Amino Acids

30.49

Weight (kDa)

5.59

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18620
malus_domestica	MD12G1035700.v1.1
prunus_persica	Prupe.7G110800_v2.0.a1
pyrus_communis	pycom12g02350
rosa_chinensis	RchiOBHm_Chr3g0473201 RchiOBHm_Chr3g0473271 RchiOBHm_Chr3g0473331 RchiOBHm_Chr3g0473361 RchiOBHm_Chr3g0473371 RchiOBHm_Chr3g0473431 RchiOBHm_Chr3g0473471 RchiOBHm_Chr3g0473501 RchiOBHm_Chr3g0473511 RchiOBHm_Chr3g0473551 RchiOBHm_Chr7g0233141
rosa_laevigata	RLG00000001293 RLG00000024007 RLG00000024017
rosa_multiflora	Rmu_sc0000908.1_g000014 Rmu_sc0000908.1_g000027 Rmu_sc0003069.1_g000052 Rmu_sc0003069.1_g000057 Rmu_sc0004463.1_g000001 Rmu_sc0010262.1_g000001 Rmu_sc0016164.1_g000017
rosa_roxburghii	Rroxscaffold_6G00408080 Rroxscaffold_6G00408190 Rroxscaffold_6G00408210
rosa_rugosa	Rorug03G0132200 Rorug03G0132500 Rorug07G0278700
rosa_samantha	Rh3BG210400 Rh3BG210700 Rh3BG211000 Rh3BG211100 Rh3BG211300 Rh3BG211900 Rh3BG212100 Rh3BG212300 Rh3CG207600 Rh3CG207800 Rh3CG208300 Rh3CG208400 Rh3CG208600 Rh3CG208800 Rh3DG207500 Rh3DG207900 Rh7BG406800 Rh7BG406900
rosa_wichuraiana	Rw0G008140 Rw0G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	756, 770
AciI	CCGC	1 cut(s)	813
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	2 cut(s)	608, 642
AfeI	AGCGCT	1 cut(s)	82
AfiI	CCNNNNNNNGG	3 cut(s)	16, 650, 767
AgsI	TTSAA	5 cut(s)	184, 392, 404, 504, 701
AjnI	CCWGG	1 cut(s)	23
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	7 cut(s)	128, 166, 205, 357, 383, 650, 830
AluI	AGCT	7 cut(s)	128, 166, 205, 357, 383, 650, 830
Aor51HI	AGCGCT	1 cut(s)	82
AoxI	GGCC	2 cut(s)	366, 705
ApeKI	GCWGC	5 cut(s)	163, 166, 383, 736, 810
ApoI	RAATTY	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	800
BaeGI	GKGCMC	1 cut(s)	761
BanI	GGYRCC	2 cut(s)	756, 770
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	5 cut(s)	153, 175, 370, 748, 822
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	25
BclI	TGATCA	2 cut(s)	255, 496
BfaI	CTAG	2 cut(s)	354, 645
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	5 cut(s)	164, 167, 384, 737, 811
BlsI	GCNGC	5 cut(s)	165, 168, 385, 738, 812
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	758, 772
BmrFI	CCNGG	1 cut(s)	25
BmrI	ACTGGG	2 cut(s)	51, 94
BmuI	ACTGGG	2 cut(s)	51, 94
BpiI	GAAGAC	1 cut(s)	447
Bpu10I	CCTNAGC	2 cut(s)	222, 414
BpuEI	CTTGAG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 650, 767
Bse1I	ACTGG	3 cut(s)	46, 100, 811
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	3 cut(s)	16, 650, 767
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	4 cut(s)	65, 197, 213, 428
BseNI	ACTGG	3 cut(s)	46, 100, 811
BseSI	GKGCMC	1 cut(s)	761
BseXI	GCAGC	5 cut(s)	153, 175, 370, 748, 822
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	2 cut(s)	369, 760
BshFI	GGCC	2 cut(s)	368, 707
BshNI	GGYRCC	2 cut(s)	756, 770
BslI	CCNNNNNNNGG	3 cut(s)	16, 650, 767
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	368, 707
Bsp1286I	GDGCHC	2 cut(s)	95, 761
Bsp143I	GATC	2 cut(s)	255, 496
BspACI	CCGC	1 cut(s)	813
BspANI	GGCC	2 cut(s)	368, 707
BspCNI	CTCAG	4 cut(s)	64, 198, 214, 427
BspLI	GGNNCC	2 cut(s)	758, 772
BspT107I	GGYRCC	2 cut(s)	756, 770
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	46, 100, 811
BssMI	GATC	2 cut(s)	255, 496
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	728, 775
BstDEI	CTNAG	4 cut(s)	51, 206, 222, 414
BstF5I	GGATG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	258, 499
BstMBI	GATC	2 cut(s)	255, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 736
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	761
BstV1I	GCAGC	5 cut(s)	153, 175, 370, 748, 822
BstV2I	GAAGAC	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	368, 707
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	728, 775
CfoI	GCGC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	607, 641
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	4 cut(s)	410, 476, 727, 785
CviQI	GTAC	2 cut(s)	607, 641
DdeI	CTNAG	4 cut(s)	51, 206, 222, 414
DpnI	GATC	2 cut(s)	257, 498
DpnII	GATC	2 cut(s)	255, 496
DraI	TTTAAA	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	95
Eco47III	AGCGCT	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	4 cut(s)	413, 479, 730, 788
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	4 cut(s)	409, 475, 726, 784
FauNDI	CATATG	1 cut(s)	631
FbaI	TGATCA	2 cut(s)	255, 496
Fnu4HI	GCNGC	5 cut(s)	164, 167, 384, 737, 811
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	5 cut(s)	164, 167, 384, 737, 811
FspBI	CTAG	2 cut(s)	354, 645
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	5 cut(s)	164, 167, 384, 737, 811
GsaI	CCCAGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	368, 707
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	413, 479, 730, 788
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	2 cut(s)	217, 310
HindII	GTYRAC	2 cut(s)	217, 310
HinfI	GANTC	2 cut(s)	400, 781
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	3 cut(s)	217, 310, 345
Hpy188I	TCNGA	4 cut(s)	54, 70, 125, 255
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	3 cut(s)	217, 310, 345
HpyAV	CCTTC	2 cut(s)	283, 687
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	9 cut(s)	32, 107, 113, 169, 386, 542, 666, 736, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 736
HpyF3I	CTNAG	4 cut(s)	51, 206, 222, 414
Hsp92II	CATG	4 cut(s)	413, 479, 730, 788
HspAI	GCGC	1 cut(s)	81
Ksp22I	TGATCA	2 cut(s)	255, 496
Kzo9I	GATC	2 cut(s)	255, 496
Lsp1109I	GCAGC	5 cut(s)	153, 175, 370, 748, 822
MaeI	CTAG	2 cut(s)	354, 645
MaeIII	GTNAC	2 cut(s)	37, 489
MalI	GATC	2 cut(s)	257, 498
MboI	GATC	2 cut(s)	255, 496
MboII	GAAGA	4 cut(s)	447, 608, 713, 722
MhlI	GDGCHC	2 cut(s)	95, 761
MluCI	AATT	4 cut(s)	13, 185, 430, 819
MseI	TTAA	4 cut(s)	429, 563, 602, 720
MslI	CAYNNNNRTG	1 cut(s)	731
MspA1I	CMGCKG	2 cut(s)	166, 813
MspR9I	CCNGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	380, 736
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	2 cut(s)	255, 496
NlaIII	CATG	4 cut(s)	413, 479, 730, 788
NlaIV	GGNNCC	2 cut(s)	758, 772
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	730
PaeI	GCATGC	1 cut(s)	730
PceI	AGGCCT	1 cut(s)	368
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	400, 781
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	5 cut(s)	165, 168, 385, 738, 812
Psp6I	CCWGG	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	758, 772
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	608, 642
RsaNI	GTAC	2 cut(s)	607, 641
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	4 cut(s)	429, 563, 602, 720
SatI	GCNGC	5 cut(s)	164, 167, 384, 737, 811
Sau3AI	GATC	2 cut(s)	255, 496
ScaI	AGTACT	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	2 cut(s)	95, 761
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
SphI	GCATGC	1 cut(s)	730
Sse9I	AATT	4 cut(s)	13, 185, 430, 819
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	1 cut(s)	813
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	2 cut(s)	354, 645
StuI	AGGCCT	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	1 cut(s)	285
TasI	AATT	4 cut(s)	13, 185, 430, 819
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	2 cut(s)	400, 781
Tru1I	TTAA	4 cut(s)	429, 563, 602, 720
Tru9I	TTAA	4 cut(s)	429, 563, 602, 720
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	5 cut(s)	163, 166, 383, 736, 810
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	294, 398, 464, 773
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	1 cut(s)	730
XspI	CTAG	2 cut(s)	354, 645
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.