Rmu_sc0004463.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004463.1
OG0001542
Physical Location & Seq
Reverse (-)
247 .. 1287
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004463.1_g000001.1.cds

Sequence Viewer

Length: 513 bp
atgtattcgaaatgtgggtttatggttgaggcttgtaaggttttcgaggaaatgccgagtaaggatgctgtgtcgtggacttcgatgattgatgggtatgcaaaaagtggggattttgaggtagctttactgagttaccagaggatgatcaatgatgggattgttcatggcttaggaaatgacgccttggaaacttttagtagaatggtccaggcaggagtgaaaccaaatgcaataacatttatcagtcttttaacaggttgtagccattctgtattggtagaggaaggtttaaagtacttttactctatggagaaaacatatggcatagtacctagagctggacattattcttgcattattgatttacttggcagggctggaaggcttgaagaggccgaagattttattaacagcatgccaatccaaatgcttttgggtggtgcccctttcttggtgcttgcacgattcatggtgataaagagaggggcatactggcagcggagaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

170

Amino Acids

18.99

Weight (kDa)

6.29

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AciI CCGC 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 299, 333
AfiI CCNNNNNNNGG 2 cut(s) 341, 454
AgsI TTSAA 1 cut(s) 392
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 125, 341
AluI AGCT 2 cut(s) 125, 341
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 443
BccI CCATC 2 cut(s) 86, 149
BciT130I CCWGG 1 cut(s) 212
BclI TGATCA 1 cut(s) 147
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 500
BlsI GCNGC 1 cut(s) 501
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 172
Bpu14I TTCGAA 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 454
Bse1I ACTGG 1 cut(s) 500
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 70, 150
BseLI CCNNNNNNNGG 2 cut(s) 341, 454
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 448
BshFI GGCC 1 cut(s) 398
BshNI GGYRCC 1 cut(s) 443
BslI CCNNNNNNNGG 2 cut(s) 341, 454
BsnI GGCC 1 cut(s) 398
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 502
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 445
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 443
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 419, 462
BstDEI CTNAG 2 cut(s) 131, 172
BstF5I GGATG 2 cut(s) 70, 150
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 448
BsuRI GGCC 1 cut(s) 398
BtsCI GGATG 2 cut(s) 70, 150
Cac8I GCNNGC 2 cut(s) 419, 462
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 298, 332
CviAII CATG 3 cut(s) 167, 418, 472
CviJI RGCY 8 cut(s) 32, 125, 171, 267, 341, 380, 388, 398
CviKI_1 RGCY 8 cut(s) 32, 125, 171, 267, 341, 380, 388, 398
CviQI GTAC 2 cut(s) 298, 332
DdeI CTNAG 2 cut(s) 131, 172
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraI TTTAAA 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 170, 421, 475
FatI CATG 3 cut(s) 166, 417, 471
FauNDI CATATG 1 cut(s) 322
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 500
FokI GGATG 2 cut(s) 77, 157
Fsp4HI GCNGC 1 cut(s) 500
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 500
HaeIII GGCC 1 cut(s) 398
HgaI GACGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 170, 421, 475
HinfI GANTC 1 cut(s) 468
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 1 cut(s) 78
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 281, 378
HpyCH4V TGCA 4 cut(s) 101, 233, 357, 464
HpyF3I CTNAG 2 cut(s) 131, 172
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 170, 421, 475
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 9 cut(s) 152, 197, 201, 224, 243, 327, 361, 366, 481
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 404, 413
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 1 cut(s) 508
MnlI CCTC 7 cut(s) 22, 40, 112, 135, 277, 388, 479
MseI TTAA 3 cut(s) 254, 293, 411
MspA1I CMGCKG 1 cut(s) 502
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 322
NdeII GATC 1 cut(s) 147
NlaIII CATG 3 cut(s) 170, 421, 475
NlaIV GGNNCC 1 cut(s) 445
NmeAIII GCCGAG 1 cut(s) 81
NspI RCATGY 1 cut(s) 421
NspV TTCGAA 1 cut(s) 8
PaeI GCATGC 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PfeI GAWTC 1 cut(s) 468
PkrI GCNGC 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 1 cut(s) 208
RsaI GTAC 2 cut(s) 299, 333
RsaNI GTAC 2 cut(s) 298, 332
SaqAI TTAA 3 cut(s) 254, 293, 411
SatI GCNGC 1 cut(s) 500
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 448
SetI ASST 7 cut(s) 42, 123, 127, 262, 292, 337, 343
SfaNI GCATC 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 208
SphI GCATGC 1 cut(s) 421
Sse9I AATT 1 cut(s) 508
SsiI CCGC 1 cut(s) 502
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 186
TaqI TCGA 3 cut(s) 8, 45, 83
TasI AATT 1 cut(s) 508
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 3 cut(s) 254, 293, 411
Tru9I TTAA 3 cut(s) 254, 293, 411
TseI GCWGC 1 cut(s) 499
TspDTI ATGAA 2 cut(s) 155, 460
VpaK11BI GGWCC 1 cut(s) 208
XceI RCATGY 1 cut(s) 421
XspI CTAG 1 cut(s) 336
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.