Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 94 - 141 | 2e-06 | PPR repeat family |
| PPR | PF01535 | 97 - 127 | 4.4e-07 | PPR repeat |
| PPR_long | PF17177 | 103 - 247 | 8.9e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 196 - 246 | 9.2e-12 | PPR repeat family |
| PPR_2 | PF13041 | 298 - 346 | 8e-10 | PPR repeat family |
| Eplus_motif | PF20430 | 458 - 485 | 1.8e-08 | E+ motif |
| DYW_deaminase | PF14432 | 489 - 579 | 5.4e-36 | DYW family of nucleic acid deaminases |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 678 |
| Acc65I | GGTACC | 1 cut(s) | 1102 |
| AccB1I | GGYRCC | 1 cut(s) | 1102 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1395 |
| AciI | CCGC | 1 cut(s) | 215 |
| AclWI | GGATC | 1 cut(s) | 1054 |
| AcoI | YGGCCR | 1 cut(s) | 1144 |
| AcsI | RAATTY | 2 cut(s) | 910, 1175 |
| AcuI | CTGAAG | 2 cut(s) | 452, 918 |
| AcyI | GRCGYC | 1 cut(s) | 954 |
| AfaI | GTAC | 4 cut(s) | 527, 1070, 1104, 1646 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 676, 1112, 1395 |
| AflIII | ACRYGT | 1 cut(s) | 1377 |
| AgsI | TTSAA | 7 cut(s) | 46, 172, 752, 764, 961, 1163, 1515 |
| AjnI | CCWGG | 1 cut(s) | 1579 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 164, 196, 467, 499 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 441, 473 |
| AluBI | AGCT | 8 cut(s) | 116, 154, 344, 717, 743, 1112, 1463, 1525 |
| AluI | AGCT | 8 cut(s) | 116, 154, 344, 717, 743, 1112, 1463, 1525 |
| Alw26I | GTCTC | 2 cut(s) | 795, 1404 |
| AlwI | GGATC | 1 cut(s) | 1054 |
| AoxI | GGCC | 4 cut(s) | 48, 726, 1144, 1167 |
| ApeKI | GCWGC | 7 cut(s) | 151, 154, 341, 743, 1198, 1272, 1323 |
| ApoI | RAATTY | 2 cut(s) | 910, 1175 |
| Asp718I | GGTACC | 1 cut(s) | 1102 |
| AspLEI | GCGC | 1 cut(s) | 1235 |
| AspS9I | GGNCC | 1 cut(s) | 979 |
| AsuC2I | CCSGG | 3 cut(s) | 983, 1148, 1341 |
| AsuHPI | GGTGA | 4 cut(s) | 566, 790, 1262, 1523 |
| AsuII | TTCGAA | 1 cut(s) | 227 |
| AvaII | GGWCC | 1 cut(s) | 979 |
| BanI | GGYRCC | 1 cut(s) | 1102 |
| BanII | GRGCYC | 1 cut(s) | 83 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1512, 1544 |
| BbsI | GAAGAC | 2 cut(s) | 807, 1433 |
| BbvI | GCAGC | 7 cut(s) | 141, 163, 353, 730, 1210, 1284, 1335 |
| BccI | CCATC | 7 cut(s) | 305, 368, 625, 1209, 1313, 1542, 1706 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 894, 928 |
| BciT130I | CCWGG | 1 cut(s) | 1581 |
| BclI | TGATCA | 5 cut(s) | 366, 612, 780, 856, 1447 |
| BcnI | CCSGG | 3 cut(s) | 983, 1148, 1341 |
| BcoDI | GTCTC | 2 cut(s) | 795, 1404 |
| BfaI | CTAG | 4 cut(s) | 405, 714, 1107, 1738 |
| BfmI | CTRYAG | 1 cut(s) | 671 |
| BfoI | RGCGCY | 1 cut(s) | 1236 |
| BfuAI | ACCTGC | 1 cut(s) | 678 |
| BglII | AGATCT | 1 cut(s) | 1483 |
| BisI | GCNGC | 7 cut(s) | 152, 155, 342, 744, 1199, 1273, 1324 |
| BlsI | GCNGC | 7 cut(s) | 153, 156, 343, 745, 1200, 1274, 1325 |
| Bme1390I | CCNGG | 4 cut(s) | 983, 1148, 1341, 1581 |
| Bme18I | GGWCC | 1 cut(s) | 979 |
| BmgT120I | GGNCC | 1 cut(s) | 979 |
| BmiI | GGNNCC | 3 cut(s) | 1104, 1387, 1697 |
| BmrFI | CCNGG | 4 cut(s) | 983, 1148, 1341, 1581 |
| BmrI | ACTGGG | 2 cut(s) | 18, 82 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BmuI | ACTGGG | 2 cut(s) | 18, 82 |
| BpiI | GAAGAC | 2 cut(s) | 807, 1433 |
| Bpu10I | CCTNAGC | 2 cut(s) | 774, 943 |
| Bpu14I | TTCGAA | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 46 |
| BpuMI | CCSGG | 3 cut(s) | 983, 1148, 1341 |
| BsaHI | GRCGYC | 1 cut(s) | 954 |
| BsaI | GGTCTC | 1 cut(s) | 1404 |
| BsaJI | CCNNGG | 2 cut(s) | 1580, 1653 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 676, 1112, 1395 |
| Bse1I | ACTGG | 4 cut(s) | 13, 88, 1273, 1572 |
| BseBI | CCWGG | 1 cut(s) | 1581 |
| BseDI | CCNNGG | 2 cut(s) | 1580, 1653 |
| BseGI | GGATG | 7 cut(s) | 289, 369, 640, 1017, 1220, 1324, 1402 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 676, 1112, 1395 |
| BseMII | CTCAG | 5 cut(s) | 32, 341, 570, 788, 1421 |
| BseNI | ACTGG | 4 cut(s) | 13, 88, 1273, 1572 |
| BseXI | GCAGC | 7 cut(s) | 141, 163, 353, 730, 1210, 1284, 1335 |
| BseYI | CCCAGC | 1 cut(s) | 71 |
| BsgI | GTGCAG | 2 cut(s) | 411, 729 |
| BshFI | GGCC | 4 cut(s) | 50, 728, 1146, 1169 |
| BshNI | GGYRCC | 1 cut(s) | 1102 |
| BsiSI | CCGG | 3 cut(s) | 982, 1147, 1341 |
| BslFI | GGGAC | 1 cut(s) | 1697 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 676, 1112, 1395 |
| BsmAI | GTCTC | 2 cut(s) | 795, 1404 |
| BsmFI | GGGAC | 1 cut(s) | 1697 |
| BsmI | GAATGC | 1 cut(s) | 157 |
| BsnI | GGCC | 4 cut(s) | 50, 728, 1146, 1169 |
| Bso31I | GGTCTC | 1 cut(s) | 1404 |
| Bsp119I | TTCGAA | 1 cut(s) | 227 |
| Bsp1286I | GDGCHC | 1 cut(s) | 83 |
| Bsp143I | GATC | 9 cut(s) | 366, 612, 780, 856, 1046, 1447, 1452, 1483, 1671 |
| BspACI | CCGC | 1 cut(s) | 215 |
| BspANI | GGCC | 4 cut(s) | 50, 728, 1146, 1169 |
| BspCNI | CTCAG | 5 cut(s) | 31, 342, 571, 787, 1420 |
| BspLI | GGNNCC | 3 cut(s) | 1104, 1387, 1697 |
| BspMAI | CTGCAG | 1 cut(s) | 675 |
| BspMI | ACCTGC | 1 cut(s) | 678 |
| BspPI | GGATC | 1 cut(s) | 1054 |
| BspT104I | TTCGAA | 1 cut(s) | 227 |
| BspT107I | GGYRCC | 1 cut(s) | 1102 |
| BspTNI | GGTCTC | 1 cut(s) | 1404 |
| BsrI | ACTGG | 4 cut(s) | 13, 88, 1273, 1572 |
| BssECI | CCNNGG | 2 cut(s) | 1580, 1653 |
| BssMI | GATC | 9 cut(s) | 366, 612, 780, 856, 1046, 1447, 1452, 1483, 1671 |
| BssNI | GRCGYC | 1 cut(s) | 954 |
| BssT1I | CCWWGG | 1 cut(s) | 1653 |
| Bst2UI | CCWGG | 1 cut(s) | 1581 |
| Bst4CI | ACNGT | 1 cut(s) | 469 |
| Bst6I | CTCTTC | 1 cut(s) | 1158 |
| BstACI | GRCGYC | 1 cut(s) | 954 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 416 |
| BstBI | TTCGAA | 1 cut(s) | 227 |
| BstC8I | GCNNGC | 2 cut(s) | 1190, 1237 |
| BstDEI | CTNAG | 6 cut(s) | 18, 350, 579, 774, 943, 1407 |
| BstF5I | GGATG | 7 cut(s) | 289, 369, 640, 1017, 1220, 1324, 1402 |
| BstH2I | RGCGCY | 1 cut(s) | 1236 |
| BstHHI | GCGC | 1 cut(s) | 1235 |
| BstKTI | GATC | 9 cut(s) | 369, 615, 783, 859, 1049, 1450, 1455, 1486, 1674 |
| BstMAI | GTCTC | 2 cut(s) | 795, 1404 |
| BstMBI | GATC | 9 cut(s) | 366, 612, 780, 856, 1046, 1447, 1452, 1483, 1671 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 416, 425, 434, 740, 1198, 1585, 1626 |
| BstNI | CCWGG | 1 cut(s) | 1581 |
| BstNSI | RCATGY | 1 cut(s) | 1192 |
| BstSCI | CCNGG | 4 cut(s) | 981, 1146, 1339, 1579 |
| BstSFI | CTRYAG | 1 cut(s) | 671 |
| BstV1I | GCAGC | 7 cut(s) | 141, 163, 353, 730, 1210, 1284, 1335 |
| BstV2I | GAAGAC | 2 cut(s) | 807, 1433 |
| BstX2I | RGATCY | 1 cut(s) | 1483 |
| BstYI | RGATCY | 1 cut(s) | 1483 |
| BsuRI | GGCC | 4 cut(s) | 50, 728, 1146, 1169 |
| BtsCI | GGATG | 7 cut(s) | 289, 369, 640, 1017, 1220, 1324, 1402 |
| BtsIMutI | CAGTG | 2 cut(s) | 428, 1565 |
| BveI | ACCTGC | 1 cut(s) | 678 |
| Cac8I | GCNNGC | 2 cut(s) | 1190, 1237 |
| CfoI | GCGC | 1 cut(s) | 1235 |
| Cfr13I | GGNCC | 1 cut(s) | 979 |
| CseI | GACGC | 1 cut(s) | 962 |
| Csp6I | GTAC | 4 cut(s) | 526, 1069, 1103, 1645 |
| CviAII | CATG | 9 cut(s) | 241, 569, 770, 906, 1099, 1189, 1327, 1496, 1725 |
| CviQI | GTAC | 4 cut(s) | 526, 1069, 1103, 1645 |
| DdeI | CTNAG | 6 cut(s) | 18, 350, 579, 774, 943, 1407 |
| DpnI | GATC | 9 cut(s) | 368, 614, 782, 858, 1048, 1449, 1454, 1485, 1673 |
| DpnII | GATC | 9 cut(s) | 366, 612, 780, 856, 1046, 1447, 1452, 1483, 1671 |
| DraI | TTTAAA | 1 cut(s) | 558 |
| EaeI | YGGCCR | 1 cut(s) | 1144 |
| Eam1104I | CTCTTC | 1 cut(s) | 1158 |
| EarI | CTCTTC | 1 cut(s) | 1158 |
| EciI | GGCGGA | 1 cut(s) | 230 |
| Eco130I | CCWWGG | 1 cut(s) | 1653 |
| Eco147I | AGGCCT | 2 cut(s) | 50, 728 |
| Eco24I | GRGCYC | 1 cut(s) | 83 |
| Eco31I | GGTCTC | 1 cut(s) | 1404 |
| Eco47I | GGWCC | 1 cut(s) | 979 |
| Eco57I | CTGAAG | 2 cut(s) | 452, 918 |
| EcoRI | GAATTC | 2 cut(s) | 910, 1175 |
| EcoRII | CCWGG | 1 cut(s) | 1579 |
| EcoT14I | CCWWGG | 1 cut(s) | 1653 |
| EcoT38I | GRGCYC | 1 cut(s) | 83 |
| ErhI | CCWWGG | 1 cut(s) | 1653 |
| FaeI | CATG | 9 cut(s) | 244, 572, 773, 909, 1102, 1192, 1330, 1499, 1728 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 732, 764 |
| FaqI | GGGAC | 1 cut(s) | 1697 |
| FatI | CATG | 9 cut(s) | 240, 568, 769, 905, 1098, 1188, 1326, 1495, 1724 |
| FauNDI | CATATG | 1 cut(s) | 1093 |
| FbaI | TGATCA | 5 cut(s) | 366, 612, 780, 856, 1447 |
| Fnu4HI | GCNGC | 7 cut(s) | 152, 155, 342, 744, 1199, 1273, 1324 |
| FokI | GGATG | 7 cut(s) | 296, 376, 647, 1004, 1227, 1331, 1389 |
| FriOI | GRGCYC | 1 cut(s) | 83 |
| Fsp4HI | GCNGC | 7 cut(s) | 152, 155, 342, 744, 1199, 1273, 1324 |
| FspBI | CTAG | 4 cut(s) | 405, 714, 1107, 1738 |
| GlaI | GCGC | 1 cut(s) | 1234 |
| GluI | GCNGC | 7 cut(s) | 152, 155, 342, 744, 1199, 1273, 1324 |
| GsaI | CCCAGC | 1 cut(s) | 75 |
| HaeII | RGCGCY | 1 cut(s) | 1236 |
| HaeIII | GGCC | 4 cut(s) | 50, 728, 1146, 1169 |
| HapII | CCGG | 3 cut(s) | 982, 1147, 1341 |
| HgaI | GACGC | 1 cut(s) | 962 |
| HhaI | GCGC | 1 cut(s) | 1235 |
| Hin1I | GRCGYC | 1 cut(s) | 954 |
| Hin1II | CATG | 9 cut(s) | 244, 572, 773, 909, 1102, 1192, 1330, 1499, 1728 |
| Hin6I | GCGC | 1 cut(s) | 1233 |
| HinP1I | GCGC | 1 cut(s) | 1233 |
| HincII | GTYRAC | 2 cut(s) | 667, 1357 |
| HindII | GTYRAC | 2 cut(s) | 667, 1357 |
| HinfI | GANTC | 1 cut(s) | 760 |
| HpaII | CCGG | 3 cut(s) | 982, 1147, 1341 |
| HphI | GGTGA | 4 cut(s) | 566, 790, 1262, 1523 |
| Hpy166II | GTNNAC | 4 cut(s) | 574, 667, 705, 1357 |
| Hpy188I | TCNGA | 7 cut(s) | 21, 37, 113, 360, 612, 1410, 1452 |
| Hpy188III | TCNNGA | 6 cut(s) | 537, 628, 643, 1044, 1445, 1456 |
| Hpy8I | GTNNAC | 4 cut(s) | 574, 667, 705, 1357 |
| Hpy99I | CGWCG | 1 cut(s) | 469 |
| HpyAV | CCTTC | 4 cut(s) | 427, 640, 1052, 1149 |
| HpyCH4III | ACNGT | 1 cut(s) | 469 |
| HpyCH4IV | ACGT | 2 cut(s) | 1067, 1379 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 416, 425, 434, 740, 1198, 1585, 1626 |
| HpyF3I | CTNAG | 6 cut(s) | 18, 350, 579, 774, 943, 1407 |
| HpySE526I | ACGT | 2 cut(s) | 1067, 1379 |
| Hsp92I | GRCGYC | 1 cut(s) | 954 |
| Hsp92II | CATG | 9 cut(s) | 244, 572, 773, 909, 1102, 1192, 1330, 1499, 1728 |
| HspAI | GCGC | 1 cut(s) | 1233 |
| KpnI | GGTACC | 1 cut(s) | 1106 |
| Ksp22I | TGATCA | 5 cut(s) | 366, 612, 780, 856, 1447 |
| Kzo9I | GATC | 9 cut(s) | 366, 612, 780, 856, 1046, 1447, 1452, 1483, 1671 |
| LmnI | GCTCC | 1 cut(s) | 1385 |
| Lsp1109I | GCAGC | 7 cut(s) | 141, 163, 353, 730, 1210, 1284, 1335 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 4 cut(s) | 405, 714, 1107, 1738 |
| MaeII | ACGT | 2 cut(s) | 1067, 1379 |
| MaeIII | GTNAC | 3 cut(s) | 4, 206, 849 |
| MalI | GATC | 9 cut(s) | 368, 614, 782, 858, 1048, 1449, 1454, 1485, 1673 |
| MboI | GATC | 9 cut(s) | 366, 612, 780, 856, 1046, 1447, 1452, 1483, 1671 |
| MflI | RGATCY | 1 cut(s) | 1483 |
| MhlI | GDGCHC | 1 cut(s) | 83 |
| MluCI | AATT | 9 cut(s) | 66, 173, 790, 805, 910, 1175, 1242, 1334, 1510 |
| MmeI | TCCRAC | 1 cut(s) | 1642 |
| MseI | TTAA | 6 cut(s) | 557, 789, 936, 1025, 1064, 1182 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1193, 1539 |
| MspA1I | CMGCKG | 1 cut(s) | 154 |
| MspI | CCGG | 3 cut(s) | 982, 1147, 1341 |
| MspR9I | CCNGG | 4 cut(s) | 983, 1148, 1341, 1581 |
| Mva1269I | GAATGC | 1 cut(s) | 157 |
| MvaI | CCWGG | 1 cut(s) | 1581 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 416, 425, 434, 740, 1198, 1585, 1626 |
| NciI | CCSGG | 3 cut(s) | 983, 1148, 1341 |
| NdeI | CATATG | 1 cut(s) | 1093 |
| NdeII | GATC | 9 cut(s) | 366, 612, 780, 856, 1046, 1447, 1452, 1483, 1671 |
| NlaIII | CATG | 9 cut(s) | 244, 572, 773, 909, 1102, 1192, 1330, 1499, 1728 |
| NlaIV | GGNNCC | 3 cut(s) | 1104, 1387, 1697 |
| NmeAIII | GCCGAG | 1 cut(s) | 300 |
| NspI | RCATGY | 1 cut(s) | 1192 |
| NspV | TTCGAA | 1 cut(s) | 227 |
| PaeI | GCATGC | 1 cut(s) | 1192 |
| PceI | AGGCCT | 2 cut(s) | 50, 728 |
| PctI | GAATGC | 1 cut(s) | 157 |
| PfeI | GAWTC | 1 cut(s) | 760 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1395 |
| PkrI | GCNGC | 7 cut(s) | 153, 156, 343, 745, 1200, 1274, 1325 |
| Psp6I | CCWGG | 1 cut(s) | 1579 |
| PspFI | CCCAGC | 1 cut(s) | 71 |
| PspGI | CCWGG | 1 cut(s) | 1579 |
| PspN4I | GGNNCC | 3 cut(s) | 1104, 1387, 1697 |
| PspPI | GGNCC | 1 cut(s) | 979 |
| PstI | CTGCAG | 1 cut(s) | 675 |
| PsuI | RGATCY | 1 cut(s) | 1483 |
| PvuII | CAGCTG | 1 cut(s) | 154 |
| RsaI | GTAC | 4 cut(s) | 527, 1070, 1104, 1646 |
| RsaNI | GTAC | 4 cut(s) | 526, 1069, 1103, 1645 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1193, 1539 |
| SaqAI | TTAA | 6 cut(s) | 557, 789, 936, 1025, 1064, 1182 |
| SatI | GCNGC | 7 cut(s) | 152, 155, 342, 744, 1199, 1273, 1324 |
| Sau3AI | GATC | 9 cut(s) | 366, 612, 780, 856, 1046, 1447, 1452, 1483, 1671 |
| Sau96I | GGNCC | 1 cut(s) | 979 |
| ScrFI | CCNGG | 4 cut(s) | 983, 1148, 1341, 1581 |
| SduI | GDGCHC | 1 cut(s) | 83 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| SfcI | CTRYAG | 1 cut(s) | 671 |
| SfuI | TTCGAA | 1 cut(s) | 227 |
| SinI | GGWCC | 1 cut(s) | 979 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1193, 1539 |
| SmlI | CTYRAG | 1 cut(s) | 25 |
| SmoI | CTYRAG | 1 cut(s) | 25 |
| SphI | GCATGC | 1 cut(s) | 1192 |
| Sse9I | AATT | 9 cut(s) | 66, 173, 790, 805, 910, 1175, 1242, 1334, 1510 |
| SseBI | AGGCCT | 2 cut(s) | 50, 728 |
| SsiI | CCGC | 1 cut(s) | 215 |
| SspI | AATATT | 1 cut(s) | 592 |
| SspMI | CTAG | 4 cut(s) | 405, 714, 1107, 1738 |
| StuI | AGGCCT | 2 cut(s) | 50, 728 |
| StyD4I | CCNGG | 4 cut(s) | 981, 1146, 1339, 1579 |
| StyI | CCWWGG | 1 cut(s) | 1653 |
| TaaI | ACNGT | 1 cut(s) | 469 |
| TaiI | ACGT | 2 cut(s) | 1070, 1382 |
| TaqI | TCGA | 7 cut(s) | 227, 264, 302, 464, 530, 627, 642 |
| TasI | AATT | 9 cut(s) | 66, 173, 790, 805, 910, 1175, 1242, 1334, 1510 |
| TatI | WGTACW | 2 cut(s) | 525, 1644 |
| TfiI | GAWTC | 1 cut(s) | 760 |
| Tru1I | TTAA | 6 cut(s) | 557, 789, 936, 1025, 1064, 1182 |
| Tru9I | TTAA | 6 cut(s) | 557, 789, 936, 1025, 1064, 1182 |
| TscAI | CASTG | 2 cut(s) | 435, 1572 |
| TseI | GCWGC | 7 cut(s) | 151, 154, 341, 743, 1198, 1272, 1323 |
| TspDTI | ATGAA | 8 cut(s) | 229, 449, 557, 651, 758, 1168, 1343, 1713 |
| TspRI | CASTG | 2 cut(s) | 435, 1572 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1395 |
| VpaK11BI | GGWCC | 1 cut(s) | 979 |
| XapI | RAATTY | 2 cut(s) | 910, 1175 |
| XceI | RCATGY | 1 cut(s) | 1192 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1709 |
| XspI | CTAG | 4 cut(s) | 405, 714, 1107, 1738 |