Rh3BG210700

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
18965944 .. 18966372
429 bp
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UTR
Exon/CDS
Intron
Rh3BG210700.1

Sequence Viewer

Length: 429 bp
ATGCCGAGTAAGGATGCTGTGTCGTGGACTTCGATGATTGATGGGTATGCAAAGAGTGGGGATTTTGAGGCAACTTTACTGAGTTATCAGAGGATGATCAATGATGGGATTGGTGTAGATAAATATGTTGTTTCTAGTGCATTGAGTGCTTCTTCTGCACTGAAGGCTTGTCAGTTTGGAAAGCGTGTTCATTCGACGGTTGTGAAGTTCGGATTGGAAGTAGAGGTTGCTGTGGGAAATGCTCTGGTTGATATGTACTCGAAATCAGGTGATATGGTGAGTGCTTTAAATGTGTTTCGGGTTGACCCTGAGTGCAGAAATATTGTGTCGTATTCCTCTGTGATCAATGGTTATGTTGAGATGGATGAAATCGAGAAGGCTTTTAGTGTGTTTGTTGACTTACAGAGAAGGGGAGCTGAGCCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

15.47

Weight (kDa)

4.95

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 7 - 37 3.9e-06 PPR repeat
PPR_2 PF13041 106 - 142 5.8e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 1 cut(s) 416
AluI AGCT 1 cut(s) 416
AsuHPI GGTGA 2 cut(s) 281, 289
BccI CCATC 3 cut(s) 35, 98, 355
BclI TGATCA 2 cut(s) 96, 342
BfaI CTAG 1 cut(s) 135
BlpI GCTNAGC 1 cut(s) 417
BmsI GCATC 1 cut(s) 4
Bpu1102I GCTNAGC 1 cut(s) 417
BseGI GGATG 3 cut(s) 19, 99, 370
BseMII CTCAG 3 cut(s) 71, 300, 408
BsgI GTGCAG 2 cut(s) 141, 334
Bsp143I GATC 2 cut(s) 96, 342
Bsp1720I GCTNAGC 1 cut(s) 417
BspCNI CTCAG 3 cut(s) 72, 301, 409
BssMI GATC 2 cut(s) 96, 342
Bst4CI ACNGT 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 146
BstDEI CTNAG 3 cut(s) 80, 309, 417
BstF5I GGATG 3 cut(s) 19, 99, 370
BstKTI GATC 2 cut(s) 99, 345
BstMBI GATC 2 cut(s) 96, 342
BstMWI GCNNNNNNNGC 3 cut(s) 146, 155, 164
BtsCI GGATG 3 cut(s) 19, 99, 370
BtsIMutI CAGTG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 256
CviJI RGCY 4 cut(s) 167, 380, 416, 421
CviKI_1 RGCY 4 cut(s) 167, 380, 416, 421
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 3 cut(s) 80, 309, 417
DpnI GATC 2 cut(s) 98, 344
DpnII GATC 2 cut(s) 96, 342
DraI TTTAAA 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 182
FaiI YATR 5 cut(s) 48, 126, 254, 275, 354
FbaI TGATCA 2 cut(s) 96, 342
FokI GGATG 3 cut(s) 26, 106, 377
FspBI CTAG 1 cut(s) 135
HincII GTYRAC 2 cut(s) 304, 397
HindII GTYRAC 2 cut(s) 304, 397
HphI GGTGA 2 cut(s) 281, 289
Hpy166II GTNNAC 3 cut(s) 27, 304, 397
Hpy188I TCNGA 2 cut(s) 90, 212
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 3 cut(s) 27, 304, 397
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 157, 370, 402
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 50, 140, 158, 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 155, 164
HpyF3I CTNAG 3 cut(s) 80, 309, 417
Ksp22I TGATCA 2 cut(s) 96, 342
Kzo9I GATC 2 cut(s) 96, 342
LmnI GCTCC 1 cut(s) 413
LpnPI CCDG 3 cut(s) 230, 252, 321
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 135
MalI GATC 2 cut(s) 98, 344
MboI GATC 2 cut(s) 96, 342
MboII GAAGA 1 cut(s) 144
MluCI AATT 1 cut(s) 424
MnlI CCTC 4 cut(s) 61, 84, 217, 346
MseI TTAA 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 146, 155, 164
NdeII GATC 2 cut(s) 96, 342
NmeAIII GCCGAG 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 29
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 287
Sau3AI GATC 2 cut(s) 96, 342
SetI ASST 3 cut(s) 228, 271, 418
SfaNI GCATC 1 cut(s) 4
Sse9I AATT 1 cut(s) 424
SspI AATATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 32, 194, 260, 372
TasI AATT 1 cut(s) 424
TatI WGTACW 1 cut(s) 255
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 179, 381
TspRI CASTG 1 cut(s) 165
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.