RLG00000001293

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
13631641 .. 13632213
573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001293

Sequence Viewer

Length: 573 bp
ATGTACTCCAAATACGGGCAAGTCGACTATGCCCTCAAGGTTTTCGACCAAATGCCTCACCGAAACTTGGTTTCTTGGACTGCAATGGTAACTGGGTCTTCTCAGAACTTGAGGTGCTTGGAGAGTTTCAAGGCCTTTTCCCAGATGAGAAGTGCTGGGGAGAGCCCGACCCAGTTTGCATTTGCAAGTGTCATCAGAGCTTGTGTGGTTCTTGGGTCGATTGAGGTAGGGAGGCAGCTGCATTCTTTTGCTTTGAAATTGGGCTTGGCTTGTGAGCTGTTTGTAGGTAGTAACTTGGCGGATATGTATTCGAAATGTGGGTTCATGGTTGATGCTTGTAAGGTTTTCGAGGAAATGCCGAGTAAGGATGCTGTGTCATGGACTTCGATGATTGATGGGTATGCAAAGAGTGGGGATTTTGAGGCAGCTTTACGGAGTTATAAGAGGATGATTAATGATGGGATTGGCATAGATAAACATGTTGTTTCTAGTGCATTGAGTGCTTGTTCTGCACTAAAGGCTTGTCAGTTTGGCATTGGAAGTAGAGGTTGCTGTGGGAAATGCTCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

191

Amino Acids

20.56

Weight (kDa)

8.52

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 122 - 169 5.5e-08 PPR repeat family
PPR PF01535 125 - 155 1.2e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
AccI GTMKAC 1 cut(s) 24
AciI CCGC 1 cut(s) 299
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 15, 67
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 2 cut(s) 130, 256
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 4 cut(s) 200, 238, 277, 428
AluI AGCT 4 cut(s) 200, 238, 277, 428
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 235, 238, 425
AseI ATTAAT 1 cut(s) 453
AsuHPI GGTGA 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 311
BanII GRGCYC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 225, 247, 437
BccI CCATC 2 cut(s) 389, 452
BfaI CTAG 1 cut(s) 489
BisI GCNGC 3 cut(s) 236, 239, 426
BlsI GCNGC 3 cut(s) 237, 240, 427
BmrI ACTGGG 2 cut(s) 102, 166
BmsI GCATC 2 cut(s) 322, 358
BmuI ACTGGG 2 cut(s) 102, 166
BpiI GAAGAC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 20, 130
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 67
Bse1I ACTGG 2 cut(s) 97, 172
Bse3DI GCAATG 1 cut(s) 90
BseGI GGATG 2 cut(s) 373, 453
BseLI CCNNNNNNNGG 2 cut(s) 15, 67
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 97, 172
BseXI GCAGC 3 cut(s) 225, 247, 437
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 15, 67
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 167
BspACI CCGC 1 cut(s) 299
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 2 cut(s) 97, 172
BstAPI GCANNNNNTGC 1 cut(s) 500
BstBI TTCGAA 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 373, 453
BstMWI GCNNNNNNNGC 3 cut(s) 500, 509, 518
BstNSI RCATGY 1 cut(s) 482
BstV1I GCAGC 3 cut(s) 225, 247, 437
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 373, 453
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 325, 378, 479
CviJI RGCY 9 cut(s) 134, 165, 200, 238, 264, 269, 277, 428, 521
CviKI_1 RGCY 9 cut(s) 134, 165, 200, 238, 264, 269, 277, 428, 521
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 102
EciI GGCGGA 1 cut(s) 314
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 167
FaeI CATG 3 cut(s) 328, 381, 482
FaiI YATR 8 cut(s) 30, 305, 326, 379, 402, 441, 470, 480
FatI CATG 3 cut(s) 324, 377, 478
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 236, 239, 426
FokI GGATG 2 cut(s) 380, 460
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 3 cut(s) 236, 239, 426
FspBI CTAG 1 cut(s) 489
GluI GCNGC 3 cut(s) 236, 239, 426
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 3 cut(s) 328, 381, 482
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 105, 197
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4V TGCA 7 cut(s) 83, 179, 185, 241, 404, 494, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 509, 518
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 3 cut(s) 328, 381, 482
LpnPI CCDG 5 cut(s) 78, 141, 155, 185, 552
Lsp1109I GCAGC 3 cut(s) 225, 247, 437
LweI GCATC 2 cut(s) 322, 358
MaeI CTAG 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 88, 290
MboII GAAGA 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 1 cut(s) 257
MnlI CCTC 9 cut(s) 44, 66, 105, 217, 225, 343, 415, 438, 539
MseI TTAA 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 241
MwoI GCNNNNNNNGC 3 cut(s) 500, 509, 518
NlaIII CATG 3 cut(s) 328, 381, 482
NmeAIII GCCGAG 1 cut(s) 384
NspI RCATGY 1 cut(s) 482
NspV TTCGAA 1 cut(s) 311
PceI AGGCCT 1 cut(s) 134
PciI ACATGT 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 241
PkrI GCNGC 3 cut(s) 237, 240, 427
PscI ACATGT 1 cut(s) 478
PshBI ATTAAT 1 cut(s) 453
PsiI TTATAA 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 238
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 3 cut(s) 236, 239, 426
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 2 cut(s) 322, 358
SfuI TTCGAA 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 35, 109
SmoI CTYRAG 2 cut(s) 35, 109
Sse9I AATT 1 cut(s) 257
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 489
StuI AGGCCT 1 cut(s) 134
TaqI TCGA 6 cut(s) 24, 45, 218, 311, 348, 386
TasI AATT 1 cut(s) 257
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseI GCWGC 3 cut(s) 235, 238, 425
TspDTI ATGAA 1 cut(s) 313
TspGWI ACGGA 1 cut(s) 448
VspI ATTAAT 1 cut(s) 453
XceI RCATGY 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.