RchiOBHm_Chr7g0233141

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001542
Physical Location & Seq
Reverse (-)
57507247 .. 57508539
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20896

Sequence Viewer

Length: 1128 bp
ATGCAACTAAACAAAGGCAAAGAGCTCCACGCTTACCTCCTACGCACCCATTACCCACTATGCATTTTCCTCACCAACCACCTTCTCAAAATGTACTCCAAATGTGGGCACGTTGACTATGCCCTCAAGAACTTAAGGTTCTCGGAGAGTTTCAAGGCCTTTTCCAGGATGAGAAGTGTTGGGGAGAGCCCGACCCAGTTTGCATTTGCAAGTATCATTAGAGCTTGTGTGGTTCTTGGGTCGGTTGAGGTTGGGAGGCAGCTGCATTCTTTTGCTTTGAAATTGGGCTTGGCTTGTGAGCTGTTTGTGGGTAGTAACTTGGTGGATATGTATTTGAAATGTGGGTTCATGGTTGATGCTTGTAAGGTTTTCGAGGAAATACCGAGTAAGGATGCTGCGTCATGGACTTCGATGATTGATGGGTATACAAAGAGTGGAGATTTGAGGCAGCTTTATGGATTTGGCATTGGAAGTAGAAATATTGTGTCGTATTCCTCTCCCATCAATGGTTATGTCAAGATTGATGAAATCAAGAAGGCTTTTAGTGTGTCTGTTGACTTACAGAGGGGGGTGGGAGTTGAGCCTAATCAGTTCACTTTTTCTAACTTGGTCAAGGCTTGTACCAGCCAAGCTGCACTTGAACAAGGGATCCAACTTCATGCTAAGGTGGTCAAGTTTAATTTTGATAGAGACAATTTTGTGCCTTCTGTTCTTGTTGATATGTATGGTAAATGTGGGTTACTTAATCATTCAATACAAGTGTTTGACGAGGTAGCCACCCCGACTCAAGTAGCATGGAATTCATTGCTAAGTGCATTTGCAGTTCATGGCTTAGGAAATGACGTCTTGAAAACTTTTAGTAGAATGGTCCAGGCAAGAGTGAAACCAAATGCAATAACATTTATCAGTCTTTTAACAGGGTGTAGCCATTCCGGATTGGTAGAGGAAAGTTTAAAGTACTTTTACTCTATGGAGAAAACATATGGAATAGTACCTAGAGCTGGACATTACTCTTGCATTATTGGTTTACTTGGCGGGGCAAAAAGGCTTGAAAAGGCTGAAGATTTTATTAACAGCATGCGAATGCAGCCAAATACTTTTGGGTGGTTCTTGCACCATTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

375

Amino Acids

41.82

Weight (kDa)

8.97

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 159 - 207 6.1e-07 PPR repeat family
PPR_2 PF13041 261 - 309 8e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 846
AccI GTMKAC 1 cut(s) 425
AccIII TCCGGA 1 cut(s) 932
AciI CCGC 1 cut(s) 1035
AclWI GGATC 2 cut(s) 643, 656
AcsI RAATTY 1 cut(s) 799
AcuI CTGAAG 1 cut(s) 1080
AcyI GRCGYC 1 cut(s) 843
AfaI GTAC 4 cut(s) 95, 622, 959, 993
AfiI CCNNNNNNNGG 4 cut(s) 105, 165, 506, 1001
AflII CTTAAG 1 cut(s) 133
AgsI TTSAA 7 cut(s) 154, 280, 337, 641, 753, 850, 1052
AjnI CCWGG 2 cut(s) 164, 870
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AloI GAACNNNNNNTCC 2 cut(s) 633, 665
AluBI AGCT 7 cut(s) 25, 224, 262, 301, 451, 632, 1001
AluI AGCT 7 cut(s) 25, 224, 262, 301, 451, 632, 1001
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 684
AlwI GGATC 2 cut(s) 643, 656
Aor13HI TCCGGA 1 cut(s) 932
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 6 cut(s) 259, 262, 395, 448, 632, 1087
ApoI RAATTY 1 cut(s) 799
AspS9I GGNCC 1 cut(s) 868
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 868
BaeGI GKGCMC 1 cut(s) 111
BamHI GGATCC 1 cut(s) 648
BanII GRGCYC 2 cut(s) 27, 191
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 6 cut(s) 249, 271, 382, 460, 619, 1099
BccI CCATC 2 cut(s) 413, 509
BciT130I CCWGG 2 cut(s) 166, 872
BcoDI GTCTC 1 cut(s) 684
BfaI CTAG 1 cut(s) 996
BfrI CTTAAG 1 cut(s) 133
BisI GCNGC 6 cut(s) 260, 263, 396, 449, 633, 1088
BlsI GCNGC 6 cut(s) 261, 264, 397, 450, 634, 1089
BmcAI AGTACT 1 cut(s) 959
Bme1390I CCNGG 2 cut(s) 166, 872
Bme18I GGWCC 1 cut(s) 868
BmgT120I GGNCC 1 cut(s) 868
BmiI GGNNCC 1 cut(s) 650
BmrFI CCNGG 2 cut(s) 166, 872
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 346, 382
BmuI ACTGGG 1 cut(s) 190
Bpu10I CCTNAGC 2 cut(s) 663, 832
BpuEI CTTGAG 2 cut(s) 110, 771
BsaHI GRCGYC 1 cut(s) 843
BsaWI WCCGGW 1 cut(s) 932
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 165, 506, 1001
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 803
BseAI TCCGGA 1 cut(s) 932
BseBI CCWGG 2 cut(s) 166, 872
BseGI GGATG 2 cut(s) 174, 397
BseLI CCNNNNNNNGG 4 cut(s) 105, 165, 506, 1001
BseMI GCAATG 1 cut(s) 803
BseNI ACTGG 1 cut(s) 196
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 6 cut(s) 249, 271, 382, 460, 619, 1099
BsgI GTGCAG 1 cut(s) 618
BshFI GGCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 933
BslI CCNNNNNNNGG 4 cut(s) 105, 165, 506, 1001
BsmAI GTCTC 1 cut(s) 684
BsmI GAATGC 2 cut(s) 265, 1089
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 3 cut(s) 27, 111, 191
Bsp13I TCCGGA 1 cut(s) 932
Bsp143I GATC 1 cut(s) 648
BspACI CCGC 1 cut(s) 1035
BspANI GGCC 1 cut(s) 158
BspEI TCCGGA 1 cut(s) 932
BspLI GGNNCC 1 cut(s) 650
BspPI GGATC 2 cut(s) 643, 656
BspTI CTTAAG 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 803
BsrI ACTGG 1 cut(s) 196
BssMI GATC 1 cut(s) 648
BssNAI GTATAC 1 cut(s) 426
BssNI GRCGYC 1 cut(s) 843
Bst1107I GTATAC 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 166, 872
BstACI GRCGYC 1 cut(s) 843
BstAFI CTTAAG 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 1079
BstDEI CTNAG 3 cut(s) 663, 809, 832
BstENI CCTNNNNNAGG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 174, 397
BstKTI GATC 1 cut(s) 651
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 1 cut(s) 648
BstMWI GCNNNNNNNGC 1 cut(s) 1087
BstNI CCWGG 2 cut(s) 166, 872
BstNSI RCATGY 1 cut(s) 1081
BstSCI CCNGG 2 cut(s) 164, 870
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 6 cut(s) 249, 271, 382, 460, 619, 1099
BstX2I RGATCY 1 cut(s) 648
BstYI RGATCY 1 cut(s) 648
BstZ17I GTATAC 1 cut(s) 426
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 174, 397
Cac8I GCNNGC 1 cut(s) 1079
Cfr13I GGNCC 1 cut(s) 868
CseI GACGC 1 cut(s) 387
Csp6I GTAC 4 cut(s) 94, 621, 958, 992
CviAII CATG 7 cut(s) 349, 402, 659, 795, 827, 1078, 1122
CviQI GTAC 4 cut(s) 94, 621, 958, 992
DdeI CTNAG 3 cut(s) 663, 809, 832
DpnI GATC 1 cut(s) 650
DpnII GATC 1 cut(s) 648
DraI TTTAAA 1 cut(s) 954
Ecl136II GAGCTC 1 cut(s) 25
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 2 cut(s) 27, 191
Eco47I GGWCC 1 cut(s) 868
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 1080
EcoICRI GAGCTC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 2 cut(s) 164, 870
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 2 cut(s) 27, 191
FaeI CATG 7 cut(s) 352, 405, 662, 798, 830, 1081, 1125
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FatI CATG 7 cut(s) 348, 401, 658, 794, 826, 1077, 1121
FauI CCCGC 1 cut(s) 1028
FauNDI CATATG 1 cut(s) 982
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 6 cut(s) 260, 263, 396, 449, 633, 1088
FokI GGATG 2 cut(s) 181, 404
FriOI GRGCYC 2 cut(s) 27, 191
Fsp4HI GCNGC 6 cut(s) 260, 263, 396, 449, 633, 1088
FspBI CTAG 1 cut(s) 996
GluI GCNGC 6 cut(s) 260, 263, 396, 449, 633, 1088
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 933
HgaI GACGC 1 cut(s) 387
Hin1I GRCGYC 1 cut(s) 843
Hin1II CATG 7 cut(s) 352, 405, 662, 798, 830, 1081, 1125
HincII GTYRAC 2 cut(s) 115, 556
HindII GTYRAC 2 cut(s) 115, 556
HinfI GANTC 1 cut(s) 784
HpaII CCGG 1 cut(s) 933
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 5 cut(s) 115, 426, 556, 594, 1028
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 5 cut(s) 127, 517, 532, 847, 933
Hpy8I GTNNAC 5 cut(s) 115, 426, 556, 594, 1028
HpyAV CCTTC 3 cut(s) 92, 529, 714
HpyCH4IV ACGT 2 cut(s) 111, 843
HpyF10VI GCNNNNNNNGC 1 cut(s) 1087
HpyF3I CTNAG 3 cut(s) 663, 809, 832
HpySE526I ACGT 2 cut(s) 111, 843
Hsp92I GRCGYC 1 cut(s) 843
Hsp92II CATG 7 cut(s) 352, 405, 662, 798, 830, 1081, 1125
Kpn2I TCCGGA 1 cut(s) 932
Kzo9I GATC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 9 cut(s) 151, 178, 209, 637, 857, 884, 903, 946, 987
Lsp1109I GCAGC 6 cut(s) 249, 271, 382, 460, 619, 1099
LweI GCATC 2 cut(s) 346, 382
MaeI CTAG 1 cut(s) 996
MaeII ACGT 2 cut(s) 111, 843
MaeIII GTNAC 2 cut(s) 314, 738
MalI GATC 1 cut(s) 650
MboI GATC 1 cut(s) 648
MboII GAAGA 1 cut(s) 1073
MflI RGATCY 1 cut(s) 648
MhlI GDGCHC 3 cut(s) 27, 111, 191
MluCI AATT 4 cut(s) 281, 679, 694, 799
MlyI GAGTC 1 cut(s) 778
MmeI TCCRAC 1 cut(s) 676
Mph1103I ATGCAT 1 cut(s) 65
MroI TCCGGA 1 cut(s) 932
MseI TTAA 6 cut(s) 134, 678, 744, 914, 953, 1071
MslI CAYNNNNRTG 1 cut(s) 1082
MspA1I CMGCKG 1 cut(s) 262
MspCI CTTAAG 1 cut(s) 133
MspI CCGG 1 cut(s) 933
MspR9I CCNGG 2 cut(s) 166, 872
Mva1269I GAATGC 2 cut(s) 265, 1089
MvaI CCWGG 2 cut(s) 166, 872
MwoI GCNNNNNNNGC 1 cut(s) 1087
NdeI CATATG 1 cut(s) 982
NdeII GATC 1 cut(s) 648
NlaIII CATG 7 cut(s) 352, 405, 662, 798, 830, 1081, 1125
NlaIV GGNNCC 1 cut(s) 650
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 1 cut(s) 1081
PaeI GCATGC 1 cut(s) 1081
PceI AGGCCT 1 cut(s) 158
PctI GAATGC 2 cut(s) 265, 1089
PfoI TCCNGGA 1 cut(s) 164
PkrI GCNGC 6 cut(s) 261, 264, 397, 450, 634, 1089
PleI GAGTC 1 cut(s) 778
PpsI GAGTC 1 cut(s) 778
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 164, 870
PspGI CCWGG 2 cut(s) 164, 870
PspN4I GGNNCC 1 cut(s) 650
PspPI GGNCC 1 cut(s) 868
PsuI RGATCY 1 cut(s) 648
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 4 cut(s) 95, 622, 959, 993
RsaNI GTAC 4 cut(s) 94, 621, 958, 992
RseI CAYNNNNRTG 1 cut(s) 1082
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 6 cut(s) 134, 678, 744, 914, 953, 1071
SatI GCNGC 6 cut(s) 260, 263, 396, 449, 633, 1088
Sau3AI GATC 1 cut(s) 648
Sau96I GGNCC 1 cut(s) 868
ScaI AGTACT 1 cut(s) 959
SchI GAGTC 1 cut(s) 778
ScrFI CCNGG 2 cut(s) 166, 872
SduI GDGCHC 3 cut(s) 27, 111, 191
SfaNI GCATC 2 cut(s) 346, 382
SinI GGWCC 1 cut(s) 868
SmiMI CAYNNNNRTG 1 cut(s) 1082
SmlI CTYRAG 3 cut(s) 125, 133, 786
SmoI CTYRAG 3 cut(s) 125, 133, 786
SphI GCATGC 1 cut(s) 1081
Sse9I AATT 4 cut(s) 281, 679, 694, 799
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 1 cut(s) 1035
SspI AATATT 1 cut(s) 481
SspMI CTAG 1 cut(s) 996
SstI GAGCTC 1 cut(s) 27
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 164, 870
TaiI ACGT 2 cut(s) 114, 846
TaqI TCGA 2 cut(s) 372, 410
TasI AATT 4 cut(s) 281, 679, 694, 799
TatI WGTACW 2 cut(s) 93, 957
Tru1I TTAA 6 cut(s) 134, 678, 744, 914, 953, 1071
Tru9I TTAA 6 cut(s) 134, 678, 744, 914, 953, 1071
TseI GCWGC 6 cut(s) 259, 262, 395, 448, 632, 1087
TspDTI ATGAA 6 cut(s) 337, 540, 647, 792, 815, 1110
Vha464I CTTAAG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 868
XagI CCTNNNNNAGG 1 cut(s) 163
XapI RAATTY 1 cut(s) 799
XceI RCATGY 1 cut(s) 1081
XmiI GTMKAC 1 cut(s) 425
XspI CTAG 1 cut(s) 996
ZraI GACGTC 1 cut(s) 844
ZrmI AGTACT 1 cut(s) 959
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.