Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Forward (+)

24165393 .. 24167153

Gene Structure 1761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGAAAAGGTAAATGGCTCATATGAAGAAGAGTTAGATGCTATTCGTGCTAAAGATGTCTTTCAAGGTGGATTGACTCAAGGGCAACAAACTCAGATTGCGCGAAATGAACAAAGAACAGAACAGACGGATGACATGCTTCCAAGCTTGGAAGAACTGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGGTACGTCTACCTCCAGGCTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

73

Amino Acids

8.17

Weight (kDa)

4.64

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	203
AccII	CGCG	1 cut(s)	103
AfaI	GTAC	2 cut(s)	176, 199
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
AoxI	GGCC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	211
BfaI	CTAG	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	194
BsnI	GGCC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	209
BstUI	CGCG	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	175, 198
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	4 cut(s)	18, 147, 186, 214
CviKI_1	RGCY	4 cut(s)	18, 147, 186, 214
CviQI	GTAC	2 cut(s)	175, 198
DdeI	CTNAG	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	209
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	22, 24, 137
FatI	CATG	1 cut(s)	135
FauNDI	CATATG	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	203
FokI	GGATG	1 cut(s)	143
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	186
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	170, 204
Hpy188I	TCNGA	1 cut(s)	96
Hpy8I	GTNNAC	2 cut(s)	170, 204
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	101
LpnPI	CCDG	2 cut(s)	143, 196
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	200
MboII	GAAGA	3 cut(s)	38, 41, 164
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	1 cut(s)	217
MseI	TTAA	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeI	CATATG	1 cut(s)	22
NlaIII	CATG	1 cut(s)	139
NspI	RCATGY	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	194
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	176, 199
RsaNI	GTAC	2 cut(s)	175, 198
SaqAI	TTAA	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	5 cut(s)	12, 70, 149, 203, 209
SfaNI	GCATC	1 cut(s)	28
SgeI	CNNG	8 cut(s)	59, 77, 92, 114, 148, 156, 160, 170
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	220
Tru9I	TTAA	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	39, 123
TspGWI	ACGGA	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	194
XceI	RCATGY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	203
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.