Inner membrane component of T3SS, cytoplasmic domain
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531 |
| rosa_multiflora | Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110 |
| rosa_rugosa | Rorug01G0234300 Rorug02G0508600 Rorug02G0508900 |
| rosa_samantha | Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300 |
| rosa_wichuraiana | Rw7G019870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 73 |
| AluBI | AGCT | 3 cut(s) | 104, 140, 262 |
| AluI | AGCT | 3 cut(s) | 104, 140, 262 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 53 |
| BbsI | GAAGAC | 1 cut(s) | 164 |
| BfaI | CTAG | 1 cut(s) | 174 |
| BmsI | GCATC | 1 cut(s) | 160 |
| BpiI | GAAGAC | 1 cut(s) | 164 |
| BpuEI | CTTGAG | 1 cut(s) | 195 |
| Bse3DI | GCAATG | 1 cut(s) | 29 |
| BseMI | GCAATG | 1 cut(s) | 29 |
| BseMII | CTCAG | 3 cut(s) | 33, 132, 239 |
| Bsp143I | GATC | 1 cut(s) | 228 |
| BspCNI | CTCAG | 3 cut(s) | 32, 133, 238 |
| BsrDI | GCAATG | 1 cut(s) | 29 |
| BssMI | GATC | 1 cut(s) | 228 |
| BstC8I | GCNNGC | 2 cut(s) | 68, 264 |
| BstDEI | CTNAG | 3 cut(s) | 19, 141, 225 |
| BstKTI | GATC | 1 cut(s) | 231 |
| BstMBI | GATC | 1 cut(s) | 228 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BstNSI | RCATGY | 1 cut(s) | 46 |
| BstV2I | GAAGAC | 1 cut(s) | 164 |
| Cac8I | GCNNGC | 2 cut(s) | 68, 264 |
| CviAII | CATG | 1 cut(s) | 43 |
| CviJI | RGCY | 3 cut(s) | 104, 140, 262 |
| CviKI_1 | RGCY | 3 cut(s) | 104, 140, 262 |
| DdeI | CTNAG | 3 cut(s) | 19, 141, 225 |
| DpnI | GATC | 1 cut(s) | 230 |
| DpnII | GATC | 1 cut(s) | 228 |
| EcoRI | GAATTC | 1 cut(s) | 73 |
| FaeI | CATG | 1 cut(s) | 46 |
| FaiI | YATR | 6 cut(s) | 36, 44, 126, 128, 153, 155 |
| FatI | CATG | 1 cut(s) | 42 |
| FauNDI | CATATG | 1 cut(s) | 153 |
| FspBI | CTAG | 1 cut(s) | 174 |
| Hin1II | CATG | 1 cut(s) | 46 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HindIII | AAGCTT | 1 cut(s) | 260 |
| HinfI | GANTC | 1 cut(s) | 208 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 228 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyCH4IV | ACGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 46, 121 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| HpyF3I | CTNAG | 3 cut(s) | 19, 141, 225 |
| HpySE526I | ACGT | 1 cut(s) | 199 |
| Hsp92II | CATG | 1 cut(s) | 46 |
| Kzo9I | GATC | 1 cut(s) | 228 |
| LmnI | GCTCC | 1 cut(s) | 137 |
| LweI | GCATC | 1 cut(s) | 160 |
| MaeI | CTAG | 1 cut(s) | 174 |
| MaeII | ACGT | 1 cut(s) | 199 |
| MalI | GATC | 1 cut(s) | 230 |
| MboI | GATC | 1 cut(s) | 228 |
| MboII | GAAGA | 1 cut(s) | 169 |
| MluCI | AATT | 2 cut(s) | 73, 203 |
| MlyI | GAGTC | 1 cut(s) | 202 |
| MnlI | CCTC | 2 cut(s) | 28, 85 |
| MroXI | GAANNNNTTC | 1 cut(s) | 53 |
| MspA1I | CMGCKG | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| NdeI | CATATG | 1 cut(s) | 153 |
| NdeII | GATC | 1 cut(s) | 228 |
| NlaIII | CATG | 1 cut(s) | 46 |
| NspI | RCATGY | 1 cut(s) | 46 |
| PdmI | GAANNNNTTC | 1 cut(s) | 53 |
| PleI | GAGTC | 1 cut(s) | 202 |
| PpsI | GAGTC | 1 cut(s) | 202 |
| PvuII | CAGCTG | 1 cut(s) | 104 |
| Sau3AI | GATC | 1 cut(s) | 228 |
| SchI | GAGTC | 1 cut(s) | 202 |
| SetI | ASST | 4 cut(s) | 106, 142, 202, 264 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| SgeI | CNNG | 9 cut(s) | 21, 55, 79, 125, 186, 191, 212, 224, 246 |
| SmlI | CTYRAG | 1 cut(s) | 210 |
| SmoI | CTYRAG | 1 cut(s) | 210 |
| Sse9I | AATT | 2 cut(s) | 73, 203 |
| SspMI | CTAG | 1 cut(s) | 174 |
| TaiI | ACGT | 1 cut(s) | 202 |
| TaqI | TCGA | 1 cut(s) | 235 |
| TasI | AATT | 2 cut(s) | 73, 203 |
| TspDTI | ATGAA | 3 cut(s) | 39, 170, 255 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XceI | RCATGY | 1 cut(s) | 46 |
| XmnI | GAANNNNTTC | 1 cut(s) | 53 |
| XspI | CTAG | 1 cut(s) | 174 |