Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005142.1

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

134125 .. 139101

Gene Structure 4977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005142.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atgaagttttacgtggaaaaatctgttggacggtttctgcaaattccaccggattctggaatttttccggccatcacgactgttttaggtaatttctcctacttcccttcattttctgactttgtgctagttatgaaaattgttgcgcttgatgatatgaagaggagcagcctggccccgacaccattggcggtggtcggcggcggctctgtccaaattccggcggcccctttccggccacctccgggggaaccaggagagattgaagccgagtttgccctgattggtgctgcaagagttatgaaggaattcctaacatatcgccatcctggtccactattcctgcctaaaggtaaaggctttggacatcccccagatgctccaattcccttgccaagttggttggctgaggatgatgttaactattatgccagcttcttcgagaagaagggcttcactggtggcataaactactatcgaaacttggaccgaaactgggaactgactgacccctggactggggctgaaataaaagttccagttaagttcattgtgggagaccaagacctagtttataattcagtaggcggcaaggatttcatacacaaaggtggtttgaagaagtatgtgccgtttctgcaagaggaggattcactttggcaagtttccattttcggaaacttaccccgagcgaattctctctctgccaacctgacccgaaatcattttctggcgatttctccttcgtctggtgatggatttagatgccaccaatcttattcgaaccacctctccttcctctataactccgtggtagtttggtggctcaatttgaactgtagaaggcatagcaatggggagattgtggcagtggcgctatttcgggtacacgggtggttcttcgttttccggccacctctggcagccactggtcaggttttgaagcttgtgagatgtacatcaatctctccaagtggcttgaaccgaattgaagtgtggaggacgaatcaaggatttgaatttctaagattttctttgatgtttcaaggacaagaggagaccccacacgaggagagtgctgatggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

362

Amino Acids

40.47

Weight (kDa)

7.13

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AciI	CCGC	5 cut(s)	191, 201, 204, 224, 588
AcoI	YGGCCR	3 cut(s)	69, 236, 911
AcsI	RAATTY	6 cut(s)	42, 60, 216, 308, 694, 1019
AfaI	GTAC	2 cut(s)	888, 958
AfiI	CCNNNNNNNGG	9 cut(s)	56, 220, 234, 245, 496, 518, 519, 749, 1069
AgsI	TTSAA	8 cut(s)	266, 619, 835, 943, 982, 992, 1019, 1046
AjnI	CCWGG	4 cut(s)	171, 253, 328, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AleI	CACNNNNGTG	1 cut(s)	609
AloI	GAACNNNNNNTCC	2 cut(s)	776, 808
AluBI	AGCT	2 cut(s)	435, 946
AluI	AGCT	2 cut(s)	435, 946
Alw26I	GTCTC	2 cut(s)	552, 1052
AlwNI	CAGNNNCTG	1 cut(s)	929
Ama87I	CYCGRG	1 cut(s)	687
AoxI	GGCC	5 cut(s)	69, 174, 225, 236, 911
ApeKI	GCWGC	3 cut(s)	168, 290, 923
ApoI	RAATTY	6 cut(s)	42, 60, 216, 308, 694, 1019
Asp700I	GAANNNNTTC	2 cut(s)	308, 452
AspLEI	GCGC	2 cut(s)	148, 877
AspS9I	GGNCC	4 cut(s)	175, 226, 332, 487
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	764
AsuII	TTCGAA	1 cut(s)	782
AvaI	CYCGRG	1 cut(s)	687
AvaII	GGWCC	2 cut(s)	332, 487
BaeI	ACNNNNGTAYC	2 cut(s)	878, 911
BauI	CACGAG	1 cut(s)	1067
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	180, 277, 935
BccI	CCATC	4 cut(s)	80, 333, 749, 1076
BceAI	ACGGC	1 cut(s)	616
BcgI	CGANNNNNNTGC	1 cut(s)	1058
BciT130I	CCWGG	4 cut(s)	173, 255, 330, 514
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	2 cut(s)	552, 1052
BfaI	CTAG	2 cut(s)	128, 569
BfmI	CTRYAG	1 cut(s)	838
BfoI	RGCGCY	1 cut(s)	878
BisI	GCNGC	7 cut(s)	169, 202, 205, 225, 291, 589, 924
BlsI	GCNGC	7 cut(s)	170, 203, 206, 226, 292, 590, 925
Bme1390I	CCNGG	5 cut(s)	173, 246, 255, 330, 514
Bme18I	GGWCC	2 cut(s)	332, 487
BmeT110I	CYCGRG	1 cut(s)	687
BmgT120I	GGNCC	4 cut(s)	175, 226, 332, 487
BmiI	GGNNCC	3 cut(s)	177, 228, 252
BmrFI	CCNGG	5 cut(s)	173, 246, 255, 330, 514
BmrI	ACTGGG	2 cut(s)	505, 528
BmsI	GCATC	2 cut(s)	367, 755
BmuI	ACTGGG	2 cut(s)	505, 528
Bpu10I	CCTNAGC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	958
BsaI	GGTCTC	2 cut(s)	552, 1052
BsaJI	CCNNGG	3 cut(s)	245, 512, 810
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	9 cut(s)	56, 220, 234, 245, 496, 518, 519, 749, 1069
Bse1I	ACTGG	5 cut(s)	463, 500, 523, 539, 934
Bse3DI	GCAATG	1 cut(s)	859
Bse8I	GATNNNNATC	1 cut(s)	958
BseBI	CCWGG	4 cut(s)	173, 255, 330, 514
BseDI	CCNNGG	3 cut(s)	245, 512, 810
BseGI	GGATG	3 cut(s)	325, 367, 418
BseJI	GATNNNNATC	1 cut(s)	958
BseLI	CCNNNNNNNGG	9 cut(s)	56, 220, 234, 245, 496, 518, 519, 749, 1069
BseMI	GCAATG	1 cut(s)	859
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	5 cut(s)	463, 500, 523, 539, 934
BseRI	GAGGAG	4 cut(s)	178, 659, 1070, 1085
BseXI	GCAGC	3 cut(s)	180, 277, 935
BshFI	GGCC	5 cut(s)	71, 176, 227, 238, 913
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	6 cut(s)	50, 68, 221, 235, 245, 910
BslI	CCNNNNNNNGG	9 cut(s)	56, 220, 234, 245, 496, 518, 519, 749, 1069
BsmAI	GTCTC	2 cut(s)	552, 1052
BsnI	GGCC	5 cut(s)	71, 176, 227, 238, 913
Bso31I	GGTCTC	2 cut(s)	552, 1052
BsoBI	CYCGRG	1 cut(s)	687
Bsp119I	TTCGAA	1 cut(s)	782
Bsp1407I	TGTACA	1 cut(s)	956
BspACI	CCGC	5 cut(s)	191, 201, 204, 224, 588
BspANI	GGCC	5 cut(s)	71, 176, 227, 238, 913
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	177, 228, 252
BspT104I	TTCGAA	1 cut(s)	782
BspTNI	GGTCTC	2 cut(s)	552, 1052
BsrDI	GCAATG	1 cut(s)	859
BsrGI	TGTACA	1 cut(s)	956
BsrI	ACTGG	5 cut(s)	463, 500, 523, 539, 934
BssECI	CCNNGG	3 cut(s)	245, 512, 810
BssSI	CACGAG	1 cut(s)	1067
Bst2BI	CACGAG	1 cut(s)	1067
Bst2UI	CCWGG	4 cut(s)	173, 255, 330, 514
Bst4CI	ACNGT	3 cut(s)	33, 82, 839
Bst6I	CTCTTC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	956
BstBAI	YACGTR	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	782
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	408, 1025
BstDSI	CCRYGG	1 cut(s)	810
BstF5I	GGATG	3 cut(s)	325, 367, 418
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	2 cut(s)	148, 877
BstMAI	GTCTC	2 cut(s)	552, 1052
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 637
BstNI	CCWGG	4 cut(s)	173, 255, 330, 514
BstSCI	CCNGG	5 cut(s)	171, 244, 253, 328, 512
BstSFI	CTRYAG	1 cut(s)	838
BstV1I	GCAGC	3 cut(s)	180, 277, 935
BsuRI	GGCC	5 cut(s)	71, 176, 227, 238, 913
BtgI	CCRYGG	1 cut(s)	810
BtsCI	GGATG	3 cut(s)	325, 367, 418
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	3 cut(s)	456, 876, 927
Cac8I	GCNNGC	1 cut(s)	433
CaiI	CAGNNNCTG	1 cut(s)	929
CfoI	GCGC	2 cut(s)	148, 877
Cfr13I	GGNCC	4 cut(s)	175, 226, 332, 487
Csp6I	GTAC	2 cut(s)	887, 957
CviQI	GTAC	2 cut(s)	887, 957
DdeI	CTNAG	2 cut(s)	408, 1025
EaeI	YGGCCR	3 cut(s)	69, 236, 911
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco31I	GGTCTC	2 cut(s)	552, 1052
Eco47I	GGWCC	2 cut(s)	332, 487
Eco88I	CYCGRG	1 cut(s)	687
EcoRI	GAATTC	2 cut(s)	308, 694
EcoRII	CCWGG	4 cut(s)	171, 253, 328, 512
FalI	AAGNNNNNCTT	4 cut(s)	437, 469, 1018, 1050
Fnu4HI	GCNGC	7 cut(s)	169, 202, 205, 225, 291, 589, 924
FokI	GGATG	3 cut(s)	312, 354, 425
Fsp4HI	GCNGC	7 cut(s)	169, 202, 205, 225, 291, 589, 924
FspBI	CTAG	2 cut(s)	128, 569
GlaI	GCGC	2 cut(s)	147, 876
GluI	GCNGC	7 cut(s)	169, 202, 205, 225, 291, 589, 924
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	5 cut(s)	71, 176, 227, 238, 913
HapII	CCGG	6 cut(s)	50, 68, 221, 235, 245, 910
HhaI	GCGC	2 cut(s)	148, 877
Hin6I	GCGC	2 cut(s)	146, 875
HinP1I	GCGC	2 cut(s)	146, 875
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	3 cut(s)	53, 650, 1006
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	6 cut(s)	50, 68, 221, 235, 245, 910
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	3 cut(s)	335, 421, 889
Hpy188I	TCNGA	2 cut(s)	118, 677
Hpy188III	TCNNGA	3 cut(s)	57, 76, 442
Hpy8I	GTNNAC	3 cut(s)	335, 421, 889
HpyAV	CCTTC	6 cut(s)	117, 298, 442, 753, 805, 837
HpyCH4III	ACNGT	3 cut(s)	33, 82, 839
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	40, 293, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 637
HpyF3I	CTNAG	2 cut(s)	408, 1025
HpySE526I	ACGT	1 cut(s)	12
HspAI	GCGC	2 cut(s)	146, 875
KspAI	GTTAAC	1 cut(s)	421
LmnI	GCTCC	2 cut(s)	165, 385
Lsp1109I	GCAGC	3 cut(s)	180, 277, 935
LweI	GCATC	2 cut(s)	367, 755
MaeI	CTAG	2 cut(s)	128, 569
MaeII	ACGT	1 cut(s)	12
MboII	GAAGA	5 cut(s)	172, 430, 457, 631, 892
MmeI	TCCRAC	1 cut(s)	7
MroXI	GAANNNNTTC	2 cut(s)	308, 452
MseI	TTAA	2 cut(s)	420, 543
MslI	CAYNNNNRTG	2 cut(s)	609, 852
MspI	CCGG	6 cut(s)	50, 68, 221, 235, 245, 910
MspR9I	CCNGG	5 cut(s)	173, 246, 255, 330, 514
MvaI	CCWGG	4 cut(s)	173, 255, 330, 514
MwoI	GCNNNNNNNGC	2 cut(s)	275, 637
NciI	CCSGG	1 cut(s)	246
NlaIV	GGNNCC	3 cut(s)	177, 228, 252
NmeAIII	GCCGAG	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	782
OliI	CACNNNNGTG	1 cut(s)	609
PdmI	GAANNNNTTC	2 cut(s)	308, 452
PfeI	GAWTC	3 cut(s)	53, 650, 1006
PkrI	GCNGC	7 cut(s)	170, 203, 206, 226, 292, 590, 925
Ppu21I	YACGTR	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	576
Psp6I	CCWGG	4 cut(s)	171, 253, 328, 512
PspGI	CCWGG	4 cut(s)	171, 253, 328, 512
PspN4I	GGNNCC	3 cut(s)	177, 228, 252
PspPI	GGNCC	4 cut(s)	175, 226, 332, 487
PstNI	CAGNNNCTG	1 cut(s)	929
RsaI	GTAC	2 cut(s)	888, 958
RsaNI	GTAC	2 cut(s)	887, 957
RseI	CAYNNNNRTG	2 cut(s)	609, 852
SaqAI	TTAA	2 cut(s)	420, 543
SatI	GCNGC	7 cut(s)	169, 202, 205, 225, 291, 589, 924
Sau96I	GGNCC	4 cut(s)	175, 226, 332, 487
ScrFI	CCNGG	5 cut(s)	173, 246, 255, 330, 514
SfaNI	GCATC	2 cut(s)	367, 755
SfcI	CTRYAG	1 cut(s)	838
SfuI	TTCGAA	1 cut(s)	782
SinI	GGWCC	2 cut(s)	332, 487
SmiMI	CAYNNNNRTG	2 cut(s)	609, 852
SsiI	CCGC	5 cut(s)	191, 201, 204, 224, 588
SspMI	CTAG	2 cut(s)	128, 569
StyD4I	CCNGG	5 cut(s)	171, 244, 253, 328, 512
TaaI	ACNGT	3 cut(s)	33, 82, 839
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	441, 478, 782
TaqII	GACCGA	1 cut(s)	504
TatI	WGTACW	1 cut(s)	956
TauI	GCSGC	4 cut(s)	204, 207, 227, 591
TfiI	GAWTC	3 cut(s)	53, 650, 1006
Tru1I	TTAA	2 cut(s)	420, 543
Tru9I	TTAA	2 cut(s)	420, 543
TscAI	CASTG	3 cut(s)	463, 876, 934
TseI	GCWGC	3 cut(s)	168, 290, 923
TspDTI	ATGAA	7 cut(s)	17, 99, 149, 173, 317, 538, 589
TspGWI	ACGGA	1 cut(s)	799
TspRI	CASTG	3 cut(s)	463, 876, 934
VpaK11BI	GGWCC	2 cut(s)	332, 487
XapI	RAATTY	6 cut(s)	42, 60, 216, 308, 694, 1019
XmnI	GAANNNNTTC	2 cut(s)	308, 452
XspI	CTAG	2 cut(s)	128, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.